| 1. |
- Modin, Oskar, 1980, et al.
(författare)
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Hill-based dissimilarity indices and null models for analysis of microbial community assembly
- 2020
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Ingår i: Microbiome. - : Springer Science and Business Media LLC. - 2049-2618. ; 8:1
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Tidskriftsartikel (refereegranskat)abstract
- BackgroundHigh-throughput amplicon sequencing of marker genes, such as the 16S rRNA gene in Bacteria and Archaea, provides a wealth of information about the composition of microbial communities. To quantify differences between samples and draw conclusions about factors affecting community assembly, dissimilarity indices are typically used. However, results are subject to several biases, and data interpretation can be challenging. The Jaccard and Bray-Curtis indices, which are often used to quantify taxonomic dissimilarity, are not necessarily the most logical choices. Instead, we argue that Hill-based indices, which make it possible to systematically investigate the impact of relative abundance on dissimilarity, should be used for robust analysis of data. In combination with a null model, mechanisms of microbial community assembly can be analyzed. Here, we also introduce a new software, qdiv, which enables rapid calculations of Hill-based dissimilarity indices in combination with null models.ResultsUsing amplicon sequencing data from two experimental systems, aerobic granular sludge (AGS) reactors and microbial fuel cells (MFC), we show that the choice of dissimilarity index can have considerable impact on results and conclusions. High dissimilarity between replicates because of random sampling effects make incidence-based indices less suited for identifying differences between groups of samples. Determining a consensus table based on count tables generated with different bioinformatic pipelines reduced the number of low-abundant, potentially spurious amplicon sequence variants (ASVs) in the data sets, which led to lower dissimilarity between replicates. Analysis with a combination of Hill-based indices and a null model allowed us to show that different ecological mechanisms acted on different fractions of the microbial communities in the experimental systems.ConclusionsHill-based indices provide a rational framework for analysis of dissimilarity between microbial community samples. In combination with a null model, the effects of deterministic and stochastic community assembly factors on taxa of different relative abundances can be systematically investigated. Calculations of Hill-based dissimilarity indices in combination with a null model can be done in qdiv, which is freely available as a Python package (https://github.com/omvatten/qdiv). In qdiv, a consensus table can also be determined from several count tables generated with different bioinformatic pipelines.
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| 2. |
- Pawar, Sudhanshu S., et al.
(författare)
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MultiBio: Environmental services from a multipurpose biorefinery
- 2020
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Rapport (övrigt vetenskapligt/konstnärligt)abstract
- MultiBio project aimed to establish and demonstrate a novel multipurpose biorefinery cascade concept, producing three renewable biobased products: 1) biohydrogen, 2) biopolymers and 3) protein rich meal ingredients for fish farming. The cascade concept exploits the ability of a bacterium (Caldicellulosiruptor saccharolyticus) to transform nutrients present in low-value waste process waters of the pulp and paper industry, to high-value products hydrogen gas, organic acids and microbial biomass. The organic acid rich effluent will then be managed in an open culture microbial process used to achieve discharge water quality objectives and to produce polyhydroxyalkanoate (PHA) biopolymers. Moreover, since C. saccharolyticus protein content is more than 63% of cell dry weight, their potential in formulation of fish feed was evaluated. A fiber sludge containing, CTMP residual stream was found to be a possible feedstock for the MultiBio process concept. Due to safety risks the demo-scale experiments of biohydrogen gas technology were moved from Biorefinery demo plant (Örnsköldsvik) of 40 m3 capacity to ATEX classified pilot-scale facility with 0.4 m3 capacity. Hence, bacterial biomass enough for the large-scale fish feed ingredient could not be produced. Lab-scale experiments with Caldicellulosiruptor cells as fish feed ingredient showed promising results as a protein-rich, sustainable fish feed ingredient. In addition, PHA biopolymer also showed favourable results as fish food ingredient for experiments at Gårdsfisk AB. Lab-scale experimental tests showed that the surplus activated sludge from the mills wastewater treatment could currently accumulate PHA to about 20 % of its dry weight. Mass balance evaluations based on realistically achievable expectations indicated a PHA biopolymer production potential of 3 600 tons of PHA per year from available organic residuals and for the two evaluated mills combined. The MultiBio concept has a positive climate impact in comparison with current treatment and moves developments in a positive direction to achieve 7 of the 10 Swedish environmental goals. Through a detailed feasibility analysis, a natural progression in next steps in scenarios were suggested for PHA production. The MultiBio cascade process can be implemented with further necessary development with good business potential and a positive effect on climate change. However, biohydrogen technology needs further developments before this cascade process concept can be implemented. Alternatively, a scenario with only biopolymer technology shows already a significant business potential and even larger positive effect on climate change. A successful next step in demonstration of the PHA biopolymer production scenario may lead to it being implemented within the next few years. Furthermore, MultiBio has attracted a lot of attention regionally and nationally but also internationally with a total of 65 media listings. A licentiate thesis and three university degree projects linked to the project have been completed. Overall, the MultiBio project has successfully achieved its goals and objectives.
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| 3. |
- Rämö, Robert, et al.
(författare)
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Sediment Remediation Using Activated Carbon: Effects of Sorbent Particle Size and Resuspension on Sequestration of Metals and Organic Contaminants.
- 2022
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Ingår i: Environmental toxicology and chemistry. - : Wiley. - 1552-8618 .- 0730-7268. ; 41:4, s. 1096-1110
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Tidskriftsartikel (refereegranskat)abstract
- Thin-layer capping using activated carbon (AC) has been described as a cost-effective in situ sediment remediation method for organic contaminants. In this study, we compare the capping efficiency of powdered AC (PAC) against granular AC (GAC) using contaminated sediment from Oskarshamn harbor, Sweden. The effects of resuspension on contaminant retention and cap integrity were also studied. Intact sediment cores were collected from the outer harbor and brought to the laboratory. Three thin-layer caps, consisting of PAC or GAC mixed with clay, or clay only, were added to the sediment surface. Resuspension was created using a motor-driven paddle to simulate propeller wash from ship traffic. Passive samplers were placed in the sediment and in the water column to measure the sediment-to-water release of PAHs, PCBs, and metals. Our results show that a thin-layer cap with PAC reduced sediment-to-water fluxes of PCBs by 57 % under static conditions and 91 % under resuspension. Thin-layer capping with GAC was less effective than PAC, but reduced fluxes of high-molecular weight PAHs. Thin-layer capping with AC was less effective in retaining metals, except for Cd, which release was significantly reduced by PAC. Resuspension generally decreased water concentrations of dissolved cationic metals, perhaps due to sorption to suspended sediment particles. Sediment resuspension in treatments without capping increased fluxes of PCBs with log Kow > 7 and PAHs with log Kow 5 6, but resuspension reduced PCB and PAH fluxes through the PAC thin-layer cap. Overall, PAC performed better than GAC, but adverse effects on the benthic community and transport of PAC to non-target areas are drawbacks that favor the use of GAC. This article is protected by copyright. All rights reserved.© 2022 The Authors. Environmental Toxicology and Chemistry published by Wiley Periodicals LLC on behalf of SETAC.
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| 4. |
- Wadström, Christoffer, et al.
(författare)
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Exploring total economic values in an emerging urban circular wastewater system
- 2023
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Ingår i: Water Research. - : Elsevier BV. - 1879-2448 .- 0043-1354. ; 233
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Forskningsöversikt (refereegranskat)abstract
- Circular water management has the potential to close resource and material loops within and across value chains. In the water industry, circular municipal wastewater management through industrial urban symbiosis (IUS) is recognized as a solution to overcome water scarcity in urban environments. IUS involves collaboration between actors with different organizational backgrounds, which can lead to inherent risks of conflicting goals. This study explores how different values drive various organizations to participate in an emerging circular wastewater collaboration. The study comprises a literature review of 34 scientific articles and a case study of a potential circular wastewater system through IUS in Simrishamn, Sweden. It presents an interdisciplinary framework based on the total economic value concept and organizational archetypes for examining actor values in circular wastewater management. This framework provides a novel approach for assessing different values and how they may compete or align. It can also identify the absence of certain values, enabling the achievement of a minimum level of value coherence amongst different actors, and thereby increasing the sustainability and effectiveness of circular wastewater collaborations. Therefore, careful planning and stakeholder interaction, in accordance with economic value perspectives, can enhance the legitimacy and policy development of circular solutions.
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| 5. |
- Abadikhah, Marie, 1992
(författare)
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Influence of electrode material and stochastic factors on the performance and microbial community assembly in microbial electrochemical systems
- 2022
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Licentiatavhandling (övrigt vetenskapligt/konstnärligt)abstract
- Microbial electrolysis cells (MECs) are systems with microbial communities in the form of biofilms on electrode surfaces. The electrogenic bacteria in the anode biofilm act as catalysts for the oxidization of organic compounds, leading to release of electrons, generation of electrical current, and production of hydrogen and methane at the cathode. In addition to production of energy carriers, MECs can be used for other applications as well; for example, as biosensors to monitor biochemical oxygen demand or toxicity. The performance of MECs is determined by both deterministic and stochastic factors influencing the microbial communities on the electrode surfaces, most of which as still poorly understood. In this thesis, the effects of electrode materials on microbial community assembly and MEC performance was investigated. Two experiments were carried out. In the first, three cathode materials (carbon nanoparticles, titanium, and steel) were compared. In the second, three anode materials (carbon cloth, graphene, and nickel) were compared. The cathode materials had no significant effect on the performance of the MECs, as opposed to the anode materials where carbon cloth MECs had the highest current density and the shortest lag time during startup. The differences seen in lag time of replicate systems at the start of the experiment indicated a stochastic initial attachment of the electrogenic bacteria on the anode. Different microbial communities develop in the biofilms on the anodes and cathodes. Electrogens from the Desulfobacterota phylum dominated the anode, while various hydrogenotrophic methanogens, e.g., Methanobacterium, were found to dominate on the cathodes. Diversity and null model analysis of the electrode communities highlighted stochasticity and not electrode material as the important factor in the community assembly. Network analysis showed that the cathode communities had fewer negative interactions between taxa in comparison to the anode. Since hydrogen gas generated at the cathode surface can diffuse through the biofilm, all microorganisms on the cathode have access to the substrate, reducing the need for competition between species. In contrast, electrogens require a short distance to the anode to be able to use it as electron acceptor. Limited space on the anode and competition between electrogens shaped the anode communities and explain the higher number of negative interactions observed. Based on the findings in this thesis, it is suggested that stochastic factors have more influence than electrode material on the anode community even though there is a selective pressure for electrogenic bacteria.
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| 6. |
- Albers, Eva, 1966, et al.
(författare)
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Influence of preservation methods on biochemical composition and downstream processing of cultivated Saccharina latissima biomass
- 2021
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Ingår i: Algal Research. - : Elsevier BV. - 2211-9264. ; 55
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Tidskriftsartikel (refereegranskat)abstract
- Saccharina latissima biomass cultivated along the Swedish west coast was subjected to four different scalable preservation methods after harvest; freezing, sun-drying, oven-drying and ensiling. Freeze-drying and freezing at -80 ?C were also included to provide dry and wet references. The effects of the different preservation methods on the composition of Saccharina biomass (on dry weight, DW, basis), and the recovery as well as properties of high-quality protein, alginate and biogas were evaluated. Sun-drying significantly reduced protein, alginate and fatty acid content of the seaweeds and thereby concentrated ash in the biomass compared to the other methods. Protein/amino acids and fatty acids were significantly concentrated in ensiled biomass, while mannitol and laminarin were reduced compared to the other biomasses. Oven-drying and -20 ?C freezing affected the composition the least, with lower ash content and alterations in some specific amino and fatty acids. Sun-drying and ensiling resulted in significantly lower protein solubility at high pH compared to the other biomasses which translated into the lowest total seaweed protein recovery using the pH-shift process. Highest protein yield was obtained with the freeze-dried reference. Ensiling lead to a significant decrease in the molecular weight of alginate, while sun-drying caused a negative effect on alginate by inducing a shift in the guluronic and mannuronic acids composition of alginate. Sun-drying gave the lowest methane yield in the anaerobic digestion experiments while freezing at -80 ?C gave the highest yield, closely followed by freezing at -20 ?C and ensiling. To conclude, preservation methods must be carefully chosen to protect the valuable component in Saccharina latissima, and to achieve an efficient downstream processing ultimately yielding high quality products as part of a seaweed biorefinery.
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| 7. |
- Betsholtz, Alexander, et al.
(författare)
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Tracking 14C-labeled organic micropollutants to differentiate between adsorption and degradation in GAC and biofilm processes
- 2021
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Ingår i: Environmental Science and Technology. - : The American Chemical Society (ACS). - 0013-936X .- 1520-5851. ; 55:16, s. 11318-11327
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Tidskriftsartikel (refereegranskat)abstract
- Granular activated carbon (GAC) filters can be used to reduce emissions of organic micropollutants via municipal wastewater, but it is still uncertain to which extent biological degradation contributes to their removal in GAC filters. 14C-labeled organic micropollutants were therefore used to distinguish degradation from adsorption in a GAC-filter media with associated biofilm. The rates and extents of biological degradation and adsorption were investigated and compared with other biofilm systems, including a moving bed biofilm reactor (MBBR) and a sand filter, by monitoring 14C activities in the liquid and gas phases. The microbial cleavage of ibuprofen, naproxen, diclofenac, and mecoprop was confirmed for all biofilms, based on the formation of 14CO2, whereas the degradation of 14C-labeled moieties of sulfamethoxazole and carbamazepine was undetected. Higher degradation rates for diclofenac were observed for the GAC-filter media than for the other biofilms. Degradation of previously adsorbed diclofenac onto GAC could be confirmed by the anaerobic adsorption and subsequent aerobic degradation by the GAC-bound biofilm. This study demonstrates the potential use of 14C-labeled micropollutants to study interactions and determine the relative contributions of adsorption and degradation in GAC-based treatment systems.
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| 8. |
- Burzio, Cecilia, 1991
(författare)
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Removal of Organic Micropollutants from Wastewater in Biofilm Systems
- 2020
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Licentiatavhandling (övrigt vetenskapligt/konstnärligt)abstract
- The presence of organic hazardous substances in the aquatic environment, such as pharmaceutically active compounds and personal care products, has become a worldwide issue of increasing environmental concern. Present at concentration of nano- to milligram per liter, they are defined as organic micropollutants (OMPs). Wastewater treatment plants (WWTPs) have been recognized as the main route of emission of OMPs into the environment and as hotspot for antibiotic resistance. Not being designed for the elimination of micropollutants, the removal is often incomplete, resulting in continuous discharge. Therefore, research currently focuses on the enhancement of conventional WWTPs via physical-chemical and biological treatment processes. Among biological processes, biofilm-based treatment technologies have been found more efficient in the biotransformation of OMPs than conventional activated sludge treatment processes. Aerobic granular sludge (AGS) is a form of free-floating biofilm technique for simultaneous removal of organic carbon, nitrogen, and phosphorus in a single process step. The longer solid retention time, the higher concentration and microbial diversity and the presence of micro-niches of different redox conditions are features of AGS that make this system very attractive for the removal of OMPs. An in-depth understanding of the fate of OMPs in such systems under different operational conditions is still required. The present work investigates the degradation mechanisms of OMPs in biomass from both full-scale treatment plants and laboratory reactors. Specifically, it focuses on the impact of different conformations of AGS on the sorption of selected pharmaceuticals and the potential of different biofilm systems at the full scale WWTP to eliminate OMPs.
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| 9. |
- Ekholm, Jennifer, 1992
(författare)
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Application of aerobic granular sludge for municipal wastewater treatment - Process performance and microbial community dynamics under fluctuating conditions
- 2023
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Doktorsavhandling (övrigt vetenskapligt/konstnärligt)abstract
- Pressures of growing cities, competition for use of urban areas and higher influent loads, are pushing for innovative technologies for wastewater treatment with low demands for land footprint and costs. Furthermore, wastewater treatment is needed to move towards a circular economy by harvest of valuable resources such as nutrients and energy. Aerobic granular sludge (AGS) is a biofilm process without a carrier material for wastewater treatment, exhibiting efficient treatment performance, excellent settleability, high biomass retention, tolerance to toxicity and high loads of organic matter. In this thesis, the first implementation of the AGS process in the Nordic countries was studied to assess the treatment performance, microbial community structure, energy usage, land footprint, and volume needs. The results in this project suggested that selective sludge withdrawal, retaining long solids retention time, sufficient substrate availability, and operational flexibility are important factors for granulation. Both the AGS and parallel conventional activated sludge (CAS) process achieved stable organic matter, nitrogen, and phosphorus removal with low average effluent concentrations. Seasonal variations and environmental factors were identified as important for microbial community succession. The granular biofilm demonstrated higher biomass concentration, diversity, and lower seasonal fluctuations in community composition than the flocculent sludge. A one-year energy comparison resulted in lower specific energy usages (kWh m-3 and kWh reduced P.E.-1) and land footprint for the AGS compared to the CAS process. However, a potential for decreased energy usage was recognised for both systems, leading to the conclusion that operational optimisation and process design might be as important as the type of technology. Additionally, the influence of decreasing temperature on AGS was studied in lab-scale reactors, revealing different responses of the functional groups in the microbial community, and even various response of ASVs at the genus level. In conclusion, the AGS technology for municipal wastewater treatment under fluctuating conditions achieved low average effluent concentrations, was more compact and energy efficient compared to the CAS.
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| 10. |
- Olsson, Joakim, 1988, et al.
(författare)
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Effects of geographical location on potentially valuable components in Ulva intestinalis sampled along the Swedish coast
- 2020
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Ingår i: Applied Phycology. - : Informa UK Limited. - 2638-8081. ; 1:1, s. 80-92
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Tidskriftsartikel (refereegranskat)abstract
- Macroalgal biomass has the potential to become an important source of chemicals and commodities in a future biorefinery. Currently, production of macroalgal biomass is expensive and the content of high-value compounds is often low. Therefore, in this study the biochemical composition of Ulva intestinalis along the Swedish west coast and the east coast up to Stockholm was assessed with the aim of determining how the content of potentially valuable compounds, such as rhamnose, iduronic acid and PUFAs, could be maximized by utilizing natural variation in the choice of marine cultivation site. Along the investigated coastline, the salinity dropped from 19.4‰ at high latitudes along the west coast to 5.4‰ at Stockholm. Nitrogen and phosphorus availability varied, while temperature was similar at all locations. The two major components of biomass, carbohydrates and ash, varied inversely with the highest content of ash in the west and carbohydrates in the east. In addition, total fatty acids were significantly higher in west coast samples at 3.2 g 100 g–1 dw, with a higher proportion of mono- and polyunsaturated fatty acids. Some health-beneficial fatty acids were found, including EPA and DPA, at 10–50 mg 100 g–1 dw, respectively. The metal content and elemental composition varied widely, probably due to the influence of specific local conditions. The P content was correlated with the phosphorus concentration in waters at the locations. In PCA analysis, the monosaccharides constituting the cell wall polysaccharide ulvan were found to vary by geographical location, with higher levels possibly associated with lower salinities. However, only glucuronic acid differed significantly between sites. These results show the considerable geographical variability in the composition of Swedish U. intestinalis and suggest that different salinities could be used to create a lipid- or carbohydrate-rich biomass.
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