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MR and CT data with...
MR and CT data with multiobserver delineations of organs in the pelvic areaPart of the Gold Atlas project
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- Nyholm, Tufve (författare)
- Umeå University,Umeå universitet,Radiofysik
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- Svensson, S. (författare)
- RaySearch Laboratories AB
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- Andersson, S. (författare)
- RaySearch Laboratories AB
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- Jonsson, Joakim, 1984- (författare)
- Umeå University,Umeå universitet,Radiofysik
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- Sohlin, Maja, 1982 (författare)
- Gothenburg University,Göteborgs universitet,Institutionen för kliniska vetenskaper, Avdelningen för radiofysik,Institute of Clinical Sciences, Department of Radiation Physics,Sahlgrenska University Hospital
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- Gustafsson, Christian (författare)
- Lund University,Lunds universitet,Medicinsk strålningsfysik, Malmö,Forskargrupper vid Lunds universitet,Medical Radiation Physics, Malmö,Lund University Research Groups,Skåne University Hospital
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- Kjellén, Elisabeth (författare)
- Lund University,Lunds universitet,Tumörmikromiljö,Sektion I,Institutionen för kliniska vetenskaper, Lund,Medicinska fakulteten,Tumor microenvironment,Section I,Department of Clinical Sciences, Lund,Faculty of Medicine,Skåne University Hospital
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- Söderström, Karin (författare)
- Umeå University,Umeå universitet,Onkologi
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- Albertsson, Per, 1964 (författare)
- Gothenburg University,Göteborgs universitet,Institutionen för kliniska vetenskaper, Avdelningen för onkologi,Institute of Clinical Sciences, Department of Oncology,Sahlgrenska University Hospital
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- Blomqvist, Lennart (författare)
- Karolinska Institute,Karolinska Institutet,Umeå universitet,Onkologi,Department of Molecular Medicine and Surgery, Karolinska Institutet, Stockholm, Sweden
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- Zackrisson, Björn (författare)
- Umeå University,Umeå universitet,Onkologi
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- Olsson, Lars E. (författare)
- Lund University,Lunds universitet,Medicinsk strålningsfysik, Malmö,Forskargrupper vid Lunds universitet,Medical Radiation Physics, Malmö,Lund University Research Groups,Skåne University Hospital
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- Gunnlaugsson, Adalsteinn (författare)
- Lund University,Lunds universitet,Tumörmikromiljö,Sektion I,Institutionen för kliniska vetenskaper, Lund,Medicinska fakulteten,Tumor microenvironment,Section I,Department of Clinical Sciences, Lund,Faculty of Medicine,Skåne University Hospital
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(creator_code:org_t)
- 2018-01-24
- 2018
- Engelska.
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Ingår i: Med Phys. - : Wiley. - 0094-2405 .- 2473-4209. ; 45:3, s. 1295-1300
- Relaterad länk:
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https://aapm.onlinel...
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https://doi.org/10.1...
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https://umu.diva-por... (primary) (Raw object)
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http://dx.doi.org/10... (free)
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https://gup.ub.gu.se...
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https://doi.org/10.1...
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https://urn.kb.se/re...
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http://kipublication...
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https://lup.lub.lu.s...
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Abstract
Ämnesord
Stäng
- PurposeWe describe a public dataset with MR and CT images of patients performed in the same position with both multiobserver and expert consensus delineations of relevant organs in the male pelvic region. The purpose was to provide means for training and validation of segmentation algorithms and methods to convert MR to CT like data, i.e., so called synthetic CT (sCT). Acquisition and validation methodsT1- and T2-weighted MR images as well as CT data were collected for 19 patients at three different departments. Five experts delineated nine organs for each patient based on the T2-weighted MR images. An automatic method was used to fuse the delineations. Starting from each fused delineation, a consensus delineation was agreed upon by the five experts for each organ and patient. Segmentation overlap between user delineations with respect to the consensus delineations was measured to describe the spread of the collected data. Finally, an open-source software was used to create deformation vector fields describing the relation between MR and CT images to further increase the usability of the dataset. Data format and usage notesThe dataset has been made publically available to be used for academic purposes, and can be accessed from . Potential applicationsThe dataset provides a useful source for training and validation of segmentation algorithms as well as methods to convert MR to CT-like data (sCT). To give some examples: The T2-weighted MR images with their consensus delineations can directly be used as a template in an existing atlas-based segmentation engine; the expert delineations are useful to validate the performance of a segmentation algorithm as they provide a way to measure variability among users which can be compared with the result of an automatic segmentation; and the pairwise deformably registered MR and CT images can be a source for an atlas-based sCT algorithm or for validation of sCT algorithm. (c) 2018 The Authors. Medical Physics published by Wiley Periodicals, Inc. on behalf of American Association of Physicists in Medicine.
Ämnesord
- MEDICIN OCH HÄLSOVETENSKAP -- Klinisk medicin -- Cancer och onkologi (hsv//swe)
- MEDICAL AND HEALTH SCIENCES -- Clinical Medicine -- Cancer and Oncology (hsv//eng)
- TEKNIK OCH TEKNOLOGIER -- Medicinteknik -- Medicinsk bildbehandling (hsv//swe)
- ENGINEERING AND TECHNOLOGY -- Medical Engineering -- Medical Image Processing (hsv//eng)
- MEDICIN OCH HÄLSOVETENSKAP -- Klinisk medicin -- Hematologi (hsv//swe)
- MEDICAL AND HEALTH SCIENCES -- Clinical Medicine -- Hematology (hsv//eng)
Nyckelord
- CT
- MRI
- open dataset
- organs at risk
- radiotherapy
- image segmentation
- radiation-therapy
- radiotherapy
- algorithm
- generation
- system
- Radiology
- Nuclear Medicine & Medical Imaging
- CT
- Open dataset
- Organs at risk
- Radiotherapy
Publikations- och innehållstyp
- ref (ämneskategori)
- art (ämneskategori)
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Med Phys
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Nyholm, Tufve
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Svensson, S.
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Andersson, S.
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Jonsson, Joakim, ...
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Sohlin, Maja, 19 ...
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Gustafsson, Chri ...
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Kjellén, Elisabe ...
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Söderström, Kari ...
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Albertsson, Per, ...
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Blomqvist, Lenna ...
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Zackrisson, Björ ...
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Olsson, Lars E.
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Gunnlaugsson, Ad ...
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- MEDICIN OCH HÄLSOVETENSKAP
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MEDICIN OCH HÄLS ...
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och Klinisk medicin
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och Cancer och onkol ...
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- TEKNIK OCH TEKNOLOGIER
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TEKNIK OCH TEKNO ...
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och Medicinteknik
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och Medicinsk bildbe ...
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- MEDICIN OCH HÄLSOVETENSKAP
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MEDICIN OCH HÄLS ...
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och Klinisk medicin
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och Hematologi
- Artiklar i publikationen
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Med Phys
- Av lärosätet
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Göteborgs universitet
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Umeå universitet
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Karolinska Institutet
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Lunds universitet