| 1. |
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| 2. |
- Barroso da Silva, Fernando Luis, et al.
(författare)
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Effect of Charge Regulation and Ion-Dipole Interactions on the Selectivity of Protein-Nanoparticle Binding
- 2014
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Ingår i: Langmuir. - : American Chemical Society (ACS). - 0743-7463 .- 1520-5827. ; 30:14, s. 4078-4083
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Tidskriftsartikel (refereegranskat)abstract
- We investigate the role of different mesoscopic interactions (Coulomb, charge regulation, and ion-dipole "surface patch" effects) on the binding of bovine serum albumin (BSA) and beta-lactoglobulin (BLG) to a cationic gold nanoparticle (TTMA+). The results demonstrate that the charge-regulation mechanism plays a vital role for selectivity of protein-nanoparticle complexation at low salt concentration. At slightly higher ionic strengths, charge-dipole effects are the dominating driving force. Thus, very small variations in salt concentration strongly influence the origin of complexation.
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| 3. |
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| 4. |
- Boström, Mathias, et al.
(författare)
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Atmospheric water droplets can catalyse atom pair break-up via surface-induced resonance repulsion
- 2013
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Ingår i: Europhysics letters. - : IOP Publishing. - 0295-5075 .- 1286-4854. ; 101:4, s. 43002-
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Tidskriftsartikel (refereegranskat)abstract
- We present the theory for a retarded resonance interaction between two identical atoms near a dielectric surface. In free space the resonance interaction between isotropically excited atom pairs is attractive at all atom-atom separations. We illustrate numerically how this interaction between oxygen, sulphur, hydrogen, or nitrogen atom pairs may turn repulsive near water droplets. The results provide evidence of a mechanism causing excited state atom pair breakage to occur in the atmosphere near water droplets.
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| 5. |
- Boström, Mathias, et al.
(författare)
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Casimir attractive-repulsive transition in MEMS
- 2012
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Ingår i: European Physical Journal B. - : Springer Science and Business Media LLC. - 1434-6028 .- 1434-6036. ; 85:11, s. 377-
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Tidskriftsartikel (refereegranskat)abstract
- Unwanted stiction in micro-and nanomechanical (NEMS/MEMS) systems due to dispersion (van der Waals, or Casimir) forces is a significant hurdle in the fabrication of systems with moving parts on these length scales. Introducing a suitably dielectric liquid in the interspace between bodies has previously been demonstrated to render dispersion forces repulsive, or even to switch sign as a function of separation. Making use of recently available permittivity data calculated by us we show that such a remarkable nonmonotonic Casimir force, changing from attractive to repulsive as separation increases, can in fact be observed in systems where constituent materials are in standard NEMS/MEMS use requiring no special or exotic materials. No such nonmonotonic behaviour has been measured to date. We calculate the force between a silica sphere and a flat surface of either zinc oxide or hafnia, two materials which are among the most prominent for practical microelectrical and microoptical devices. Our results explicate the need for highly accurate permittivity functions of the materials involved for frequencies from optical to far-infrared frequencies. A careful analysis of the Casimir interaction is presented, and we show how the change in the sign of the interaction can be understood as a result of multiple crossings of the dielectric functions of the three media involved in a given set-up.
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| 6. |
- Boström, Mathias, et al.
(författare)
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Casimir force between atomically thin gold films
- 2013
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Ingår i: European Physical Journal B. - : Springer Science and Business Media LLC. - 1434-6028 .- 1434-6036. ; 86:2, s. 43-
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Tidskriftsartikel (refereegranskat)abstract
- We have used density functional theory to calculate the anisotropic dielectric functions for ultrathin gold sheets (composed of 1, 3, 6, and 15 atomic layers). Such films are important components in nano-electromechanical systems. When using correct dielectric functions rather than bulk gold dielectric functions we predict an enhanced attractive Casimir-Lifshitz force (at most around 20%) between two atomically thin gold sheets. For thicker sheets the dielectric properties and the corresponding Casimir forces approach those of gold half-spaces. The magnitude of the corrections that we predict should, within the today's level of accuracy in Casimir force measurements, be clearly detectable.
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| 7. |
- Boström, Mathias, et al.
(författare)
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Casimir-Lifshitz interaction between ZnO and SiO2 nanorods in bromobenzene turns repulsive at intermediate separations due to retardation effects
- 2012
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Ingår i: Physical Review A. Atomic, Molecular, and Optical Physics. - : American Physical Society. - 1050-2947 .- 1094-1622. ; 85:4, s. 044702-
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Tidskriftsartikel (refereegranskat)abstract
- We consider the interaction between a ZnO nanorod and a SiO2 nanorod in bromobenzene. Using optical data for the interacting objects and ambient we calculate the force (from short-range attractive van der Waals force to intermediate-range repulsive Casimir-Lifshitz force to long-range entropically driven attraction). The nonretarded van der Waals interaction is attractive at all separations. We demonstrate a retardation-driven repulsion at intermediate separations. At short separations (in the nonretarded limit) and at large separations (in the classical limit) the interaction is attractive. These effects can be understood from an analysis of multiple crossings of the dielectric functions of the three media as functions of imaginary frequencies.
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| 8. |
- Boström, Mathias, et al.
(författare)
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Enlarged molecules from excited atoms in nanochannels
- 2012
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Ingår i: Physical Review A. Atomic, Molecular, and Optical Physics. - : American Physical Society. - 1050-2947 .- 1094-1622. ; 86:1, s. 014701-
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Tidskriftsartikel (refereegranskat)abstract
- The resonance interaction that takes place in planar nanochannels between pairs of excited-state atoms is explored. We consider interactions in channels of silica, zinc oxide, and gold. The nanosized channels induce a dramatically different interaction from that in free space. Illustrative calculations for two lithium and cesium atoms demonstrate that there is a short-range repulsion followed by long-range attraction. The binding energy is strongest near the surfaces. The size of the enlarged molecule is biggest at the center of the cavity and increases with channel width. Since the interaction is generic, we predict that enlarged molecules are formed in porous structures, and that the molecule size depends on the size of the nanochannels.
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| 9. |
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| 10. |
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| 11. |
- Boström, Mathias, et al.
(författare)
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Lithium atom storage in nanoporous cellulose via surface-induced Li-2 breakage
- 2013
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Ingår i: Europhysics letters. - : IOP Publishing. - 0295-5075 .- 1286-4854. ; 104:6, s. 63003-
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Tidskriftsartikel (refereegranskat)abstract
- We demonstrate a physical mechanism that enhances a splitting of diatomic Li-2 at cellulose surfaces. The origin of this splitting is a possible surface-induced diatomic-excited-state resonance repulsion. The atomic Li is then free to form either physical or chemical bonds with the cellulose surface and even diffuse into the cellulose layer structure. This allows for an enhanced storage capacity of atomic Li in nanoporous cellulose.
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| 12. |
- Boström, Mathias, et al.
(författare)
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Modifying the Poisson-Boltzmann Approach to Model Specific Ion Effects
- 2010
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Ingår i: Specific Ion Effects. - Singapore : World Scientific Publishing Co. Pte. Ltd.. - 9789814271578 ; , s. 293-309
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Bokkapitel (övrigt vetenskapligt/konstnärligt)abstract
- Specific ion effects are important in numerous fields of science and technology. They have been discussed for over 100 years, ever since the pioneering work done by Franz Hofmeister and his group in Prague. Over the last decades, hundreds of examples have been published and periodically explanations have been proposed. However, it is only recently that a profound understanding of the basic effects and their reasons could be achieved. Today, we are not far from a general explanation of specific ion effects. This book summarizes the main new ideas that have come up in the last ten years.In this book, the efforts of theoreticians are substantially supported by the experimental results stemming from new and exciting techniques. Both the new theoretical concepts and the experimental landmarks are collected and critically discussed by eminent scientists and well-known specialists in this field. Beyond the rigorous explanations, guidelines are given to non-specialists in order to help them understand the general rules governing specific ion effects in chemistry, biology, physics and engineering.
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| 13. |
- Boström, Mathias, et al.
(författare)
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Repulsive van der Waals forces due to hydrogen exposure on bilayer graphene
- 2012
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Ingår i: Physical Review A. Atomic, Molecular, and Optical Physics. - : American Physical Society. - 1050-2947 .- 1094-1622. ; 85:1, s. 012508-
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Tidskriftsartikel (refereegranskat)abstract
- We consider the effect of atomic hydrogen exposure to a system of two undoped sheets of graphene grown near a silica surface (the first adsorbed to the surface and the second freestanding near the surface). In the absence of atomic hydrogen, the van der Waals force between the sheets is attractive at all separations, causing the sheets to come closer together. However, with the addition of atomic hydrogen between the sheets, the long-range van der Waals interaction turns repulsive at a critical concentration. The underlying triple layer structure (SiO(2)-atomic hydrogen gas-air) gives rise to a long-range repulsion that at large-enough separations dominates over the more rapidly decaying attraction between the two-dimensional undoped graphene sheets (and between the outer graphene sheet and SiO(2)). This may be an avenue to tune the separation between two graphene sheets with the gas concentration. The doping of the graphene layers increases the attractive part of the interaction and hence reduces the net repulsive interaction.
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| 14. |
- Boström, Mathias, et al.
(författare)
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Resonance interaction induced by metal surfaces catalyzes atom-pair breakage
- 2013
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Ingår i: Physical Review A. Atomic, Molecular, and Optical Physics. - : American Physical Society. - 1050-2947 .- 1094-1622. ; 87:4, s. 044701-
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Tidskriftsartikel (refereegranskat)abstract
- We present the theory for retarded resonance interaction between two identical atoms at arbitrary positions near a metal surface. The dipole-dipole resonance interaction force that binds isotropically excited atom pairs together in free space may turn repulsive close to an ideal (totally reflecting) metal surface. On the other hand, close to an infinitely permeable surface it may turn more attractive. We illustrate numerically how the dipole-dipole resonance interaction between two oxygen atoms near a metal surface may provide a repulsive energy of the same order of magnitude as the ground-state binding energy of an oxygen molecule. As a complement we also present results from density-functional theory.
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| 15. |
- Boström, Mathias, et al.
(författare)
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Retardation turns the van der Waals attraction into a Casimir repulsion as close as 3 nm
- 2012
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Ingår i: Physical Review A. Atomic, Molecular, and Optical Physics. - : American Physical Society. - 1050-2947 .- 1094-1622. ; 85:1, s. 010701-
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Tidskriftsartikel (refereegranskat)abstract
- Casimir forces between surfaces immersed in bromobenzene have recently been measured by Munday et al. [Nature (London) 454, 07610 (2009)]. Attractive Casimir forces were found between gold surfaces. The forces were repulsive between gold and silica surfaces. We show the repulsion is due to retardation effects. The van der Waals interaction is attractive at all separations. The retardation-driven repulsion sets in at around 3 nm. To our knowledge, retardation effects have never been found at such a small distance before. Retardation effects are usually associated with large distances.
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| 16. |
- Boström, Mathias, et al.
(författare)
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Sign of the Casimir-Polder interaction between atoms and oil-water interfaces: Subtle dependence on dielectric properties
- 2012
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Ingår i: Physical Review A. Atomic, Molecular, and Optical Physics. - : American Physical Society. - 1050-2947 .- 1094-1622. ; 85:6, s. 064501-
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Tidskriftsartikel (refereegranskat)abstract
- We demonstrate that Casimir-Polder energies between noble gas atoms (dissolved in water) and oil-water interfaces are highly surface specific. Both repulsion (e.g., hexane) and attraction (e.g., glycerine and cyclodecane) is found with different oils. For several intermediate oils (e.g., hexadecane, decane, and cyclohexane) both attraction and repulsion can be found in the same system. Near these oil-water interfaces the interaction is repulsive in the nonretarded limit and turns attractive at larger distances as retardation becomes important. These highly surface specific interactions may have a role to play in biological systems where the surface may be more or less accessible to dissolved atoms.
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| 17. |
- Boström, Mathias, et al.
(författare)
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Ultrathin metallic coatings can induce quantum levitation between nanosurfaces
- 2012
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Ingår i: Applied Physics Letters. - : AIP Publishing. - 0003-6951 .- 1077-3118. ; 100:25, s. 253104-
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Tidskriftsartikel (refereegranskat)abstract
- There is an attractive Casimir-Lifshitz force between two silica surfaces in a liquid (bromobenze or toluene). We demonstrate that adding an ultrathin (5-50 angstrom) metallic nanocoating to one of the surfaces results in repulsive Casimir-Lifshitz forces above a critical separation. The onset of such quantum levitation comes at decreasing separations as the film thickness decreases. Remarkably, the effect of retardation can turn attraction into repulsion. From that we explain how an ultrathin metallic coating may prevent nanoelectromechanical systems from crashing together.
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| 18. |
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| 19. |
- Boström, Tove, et al.
(författare)
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Investigating the Applicability of Antibodies Generated within the Human Protein Atlas as Capture Agents in Immunoenrichment Coupled to Mass Spectrometry
- 2014
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Ingår i: Journal of Proteome Research. - : American Chemical Society (ACS). - 1535-3893 .- 1535-3907. ; 13:10, s. 4424-4435
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Tidskriftsartikel (refereegranskat)abstract
- For identification and characterization of proteins in complex samples, immunoenrichment coupled to mass spectrometry is a good alternative due to the sensitivity of the affinity enrichment and the specificity of mass spectrometry analysis. Antibodies are commonly used affinity agents; however, for high-throughput analysis, antibody availability is usually a bottleneck. Here we present a protocol for immunoenrichment coupled to mass spectrometry in a high-throughput setup, where all steps from bead coupling to mass spectrometry sample preparation are performed in parallel in a 96-well format. Antibodies generated within the Human Protein Atlas project were tested for applicability as capture agents. The antibodies were covalently attached to protein A beads, making it possible to reuse the coupled beads at least three times without destroying the antibody binding efficiency. Target proteins were captured from a U251 MG cell lysate, eluted, digested, and analyzed using mass spectrometry. Of 30 investigated antibodies, around 50% could successfully capture the corresponding native target protein, making the available library of more than 21 000 antibodies a valuable resource for immunoenrichment assays. Due to the diversity of different antibodies regarding affinity and specificity, analyzing antibodies in a high-throughput format is challenging. Even though protocol optimization for individual antibodies can be advantageous for future studies, our method enables a fast screening strategy to determine the usefulness of antibodies in immunoenrichment setups. In addition, we show that the specificity of the antibodies can be investigated by using label-free quantification.
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| 20. |
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| 21. |
- Dou, Maofeng, et al.
(författare)
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Casimir quantum levitation tuned by means of material properties and geometries
- 2014
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Ingår i: Physical Review B. Condensed Matter and Materials Physics. - 1098-0121 .- 1550-235X. ; 89:20, s. 201407-
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Tidskriftsartikel (refereegranskat)abstract
- The Casimir force between two surfaces is attractive in most cases. Although stable suspension of nano-objects has been achieved, the sophisticated geometries make them difficult to be merged with well-established thin film processes. We find that by introducing thin film surface coating on porous substrates, a repulsive to attractive force transition is achieved when the separations are increased in planar geometries, resulting in a stable suspension of two surfaces near the force transition separation. Both the magnitude of the force and the transition distance can be flexibly tailored though modifying the properties of the considered materials, that is, thin film thickness, doping concentration, and porosity. This stable suspension can be used to design new nanodevices with ultralow friction. Moreover, it might be convenient to merge this thin film coating approach with micro- and nanofabrication processes in the future.
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| 22. |
- Edfors, Fredrik, et al.
(författare)
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Immunoproteomics using polyclonal antibodies and stable isotope-labeled affinity-purified recombinant proteins
- 2014
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Ingår i: Molecular & Cellular Proteomics. - 1535-9476 .- 1535-9484. ; 13:6, s. 1611-1624
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Tidskriftsartikel (refereegranskat)abstract
- AThe combination of immuno-based methods and mass spectrometry detection has great potential in the field of quantitative proteomics. Here, we describe a new method (immuno-SILAC) for the absolute quantification of proteins in complex samples based on polyclonal antibodies and stable isotope-labeled recombinant protein fragments to allow affinity enrichment prior to mass spectrometry analysis and accurate quantification. We took advantage of the antibody resources publicly available from the Human Protein Atlas project covering more than 80% of all human protein-coding genes. Epitope mapping revealed that a majority of the polyclonal antibodies recognized multiple linear epitopes, and based on these results, a semi-automated method was developed for peptide enrichment using polyclonal antibodies immobilized on protein A-coated magnetic beads. A protocol based on the simultaneous multiplex capture of more than 40 protein targets showed that approximately half of the antibodies enriched at least one functional peptide detected in the subsequent mass spectrometry analysis. The approach was further developed to also generate quantitative data via the addition of heavy isotope-labeled recombinant protein fragment standards prior to trypsin digestion. Here, we show that we were able to use small amounts of antibodies (50 ng per target) in this manner for efficient multiplex analysis of quantitative levels of proteins in a human HeLa cell lysate. The results suggest that polyclonal antibodies generated via immunization of recombinant protein fragments could be used for the enrichment of target peptides to allow for rapid mass spectrometry analysis taking advantage of a substantial reduction in sample complexity. The possibility of building up a proteome-wide resource for immuno-SILAC assays based on publicly available antibody resources is discussed.
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| 23. |
- Fahlgren, Anna, et al.
(författare)
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The effects of PTH, loading and surgical insult on cancellous bone at the bone-implant interface in the rabbit
- 2013
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Ingår i: Bone. - : Elsevier. - 8756-3282 .- 1873-2763. ; 52:2, s. 718-724
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Tidskriftsartikel (refereegranskat)abstract
- Enhancing the quantity and quality of cancellous bone with anabolic pharmacologic agents may lead to more successful outcomes of non-cemented joint replacements. Using a novel rabbit model of cancellous bone loading, we examined two specific questions regarding bone formation at the bone-implant interface: (1) does the administration of intermittent PTH, a potent anabolic agent, and mechanical loading individually and combined enhance the pen-implant cancellous bone volume fraction; and, (2) does surgical trauma enhance the anabolic effect of PTH on pen-implant bone volume fraction. In this model, PTH enhanced pen-implant bone volume fraction by 30% in loaded bone, while mechanical loading alone increased bone volume fraction modestly (+10%). Combined mechanical loading and PTH treatment had no synergistic effect on any cancellous parameters. However, a strong combined effect was found in bone volume fraction with combined surgery and PTH treatment (+34%) compared to intact control limbs. Adaptive changes in the cancellous bone tissue included increased ultimate stress and enhanced remodeling activity. The number of proliferative osteoblasts increased as did their expression of pro-collagen 1 and PTH receptor 1, and the number of TRAP positive osteoclasts also increased. In summary, both loading and intermittent PTH treatment enhanced pen-implant bone volume, and surgery and PTH treatment had a strong combined effect This finding is of clinical importance since enhancing early osseointegration in the post-surgical period has numerous potential benefits.
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| 24. |
- Lima, Eduardo R. A., et al.
(författare)
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Attractive double-layer forces between neutral hydrophobic and neutral hydrophilic surfaces
- 2011
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Ingår i: Physical Review E. Statistical, Nonlinear, and Soft Matter Physics. - : American Physical Society. - 1539-3755 .- 1550-2376. ; 84:6, s. 061903-
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Tidskriftsartikel (refereegranskat)abstract
- The interaction between surface patches of proteins with different surface properties has a vital role to play driving conformational changes in proteins in different salt solutions. We demonstrate the existence of ion-specific attractive double-layer forces between neutral hydrophobic and hydrophilic surfaces in the presence of certain salt solutions. This is performed by solving a generalized Poisson-Boltzmann equation for two unequal surfaces. In the calculations, we utilize parametrized ion-surface potentials and dielectric-constant profiles deduced from recent non-primitive-model molecular dynamics simulations that partially account for molecular structure and hydration effects.
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| 25. |
- Lima, Eduardo R A, et al.
(författare)
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Ion-specific thermodynamical properties of aqueous proteins
- 2010
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Ingår i: ANAIS DA ACADEMIA BRASILEIRA DE CIENCIAS. - 0001-3765. ; 82:1, s. 109-126
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Tidskriftsartikel (refereegranskat)abstract
- Ion-specific interactions between two colloidal particles are calculated using a modified Poisson-Boltzmann (PB) equation and Monte Carlo (MC) simulations. PB equations present good results of ionic concentration profiles around a macroion, especially for salt solutions containing monovalent ions. These equations include not only electrostatic interactions, but also dispersion potentials originated from polarizabilities of ions and proteins. This enables us to predict ion-specific properties of colloidal systems. We compared results obtained from the modified PB equation with those from MC simulations and integral equations. Phase diagrams and osmotic second virial coefficients are also presented for different salt solutions at different pH and ionic strengths, in agreement with the experimental results observed Hofmeister effects. In order to include the water structure and hydration effect, we have used an effective interaction obtained from molecular dynamics of each ion and a hydrophobic surface combined with PB equation. The method has been proved to be efficient and suitable for describing phenomena where the water structure close to the interface plays an essential role. Important thermodynamic properties related to protein aggregation, essential in biotechnology and pharmaceutical industries, can be obtained from the method shown here.
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