| 1. |
- Baskaran, Preetisri, et al.
(författare)
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Nitrogen dynamics of decomposing Scots pine needle litter depends on colonizing fungal species
- 2019
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Ingår i: FEMS Microbiology Ecology. - : Oxford University Press. - 0168-6496 .- 1574-6941. ; 95:6
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Tidskriftsartikel (refereegranskat)abstract
- In boreal ecosystems plant production is often limited by low availability of nitrogen. Nitrogen retention in below-ground organic pools plays an important role in restricting recirculation to plants and thereby hampers forest production. Saprotrophic fungi are commonly assigned to different decomposer strategies, but how these relate to nitrogen cycling remains to be understood. Decomposition of Scots pine needle litter was studied in axenic microcosms with the ligninolytic litter decomposing basidiomycete Gymnopus androsaceus or the stress tolerant ascomycete Chalara longipes. Changes in chemical composition were followed by 13C CP/MAS NMR spectroscopy and nitrogen dynamics was assessed by the addition of a 15N tracer. Decomposition by C. longipes resulted in nitrogen retention in non-hydrolysable organic matter, enriched in aromatic and alkylic compounds, whereas the ligninolytic G. androsaceus was able to access this pool, counteracting nitrogen retention. Our observations suggest that differences in decomposing strategies between fungal species play an important role in regulating nitrogen retention and release during litter decomposition, implying that fungal community composition may impact nitrogen cycling at the ecosystem level.
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| 2. |
- Ekblad, Alf, 1957-, et al.
(författare)
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Deforestation releases old carbon
- 2019
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Ingår i: Nature Geoscience. - : Nature Publishing Group. - 1752-0894 .- 1752-0908. ; 12:7, s. 499-500
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Tidskriftsartikel (refereegranskat)abstract
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| 3. |
- Eriksson, Ulrika, 1972-, et al.
(författare)
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Comparison of PFASs contamination in the freshwater and terrestrial environments by analysis of eggs from osprey (Pandion haliaetus), tawny owl (Strix aluco), and common kestrel (Falco tinnunculus)
- 2016
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Ingår i: Environmental Research. - San Diego, USA : Academic Press. - 0013-9351 .- 1096-0953. ; 149, s. 40-47
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Tidskriftsartikel (refereegranskat)abstract
- The level of PFAS (per- and polyfluorinated alkyl substances) contamination in freshwater and terrestrial Swedish environments in 2013/2014 was assessed by analyzing a range of perfluorinated alkyl acids, fluorotelomer acids, sulfonamides, sulfonamidoethanols and polyfluoralkyl phosphate diesters (diPAPs) in predator bird eggs. Stable isotopes ((13)C and (15)N) were analyzed to elucidate the dietary source. The tawny owl (Strix aluco, n=10) and common kestrel (Falco tinnunculus, n=40), two terrestrial species, and the osprey (Pandion haliaetus, n=30), a freshwater specie were included. In addition, a temporal trend (1997-2001, 2008-2009, 2013) in osprey was studied as well. The PFAS profile was dominated by perfluorooctane sulfonic acid (PFOS) in eggs from osprey and tawny owl, while for common kestrel perfluorinated carboxylic acids (∑PFCA) exceeded the level of PFOS. PFOS concentration in osprey eggs remained at the same level between 1997 and 2001 and 2013. For the long-chained PFCAs, there were a significant increase in concentrations in osprey eggs between 1997 and 2001 and 2008-2009. The levels of PFOS and PFCAs were about 10 and five times higher, respectively, in osprey compared to tawny owl and common kestrel. Evidence of direct exposure from PFCA precursor compounds to birds in both freshwater and terrestrial environment was observed. Low levels of diPAPs were detected in a few samples of osprey (<0.02-2.4ng/g) and common kestrel (<0.02-0.16ng/g) eggs, and 6:2 FTSA was detected in a majority of the osprey eggs (<6.3-52ng/g). One saturated telomer acid (7:3 FTCA), which is a transformation marker from precursor exposure, was detected in all species (<0.24-2.7ng/g). The (15)N data showed higher levels in osprey eggs compared to tawny owl and common kestrel, indicating that they feed on a 2-3 times higher trophic level. We conclude that ospreys are continuously exposed to PFAS at levels where adverse toxic effects have been observed in birds.
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| 4. |
- Gkarmiri, Konstantia, et al.
(författare)
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Identifying the Active Microbiome Associated with Roots and Rhizosphere Soil of Oilseed Rape
- 2017
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Ingår i: Applied and Environmental Microbiology. - : American Society for Microbiology. - 0099-2240 .- 1098-5336. ; 83:22
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Tidskriftsartikel (refereegranskat)abstract
- RNA stable isotope probing and high-throughput sequencing were used to characterize the active microbiomes of bacteria and fungi colonizing the roots and rhizosphere soil of oilseed rape to identify taxa assimilating plant-derived carbon following (13)CO2 labeling. Root- and rhizosphere soil-associated communities of both bacteria and fungi differed from each other, and there were highly significant differences between their DNA- and RNA-based community profiles. Verrucomicrobia, Proteobacteria, Planctomycetes, Acidobacteria, Gemmatimonadetes, Actinobacteria, and Chloroflexi were the most active bacterial phyla in the rhizosphere soil. Bacteroidetes were more active in roots. The most abundant bacterial genera were well represented in both the (13)C- and (12)C-RNA fractions, while the fungal taxa were more differentiated. Streptomyces, Rhizobium, and Flavobacterium were dominant in roots, whereas Rhodoplanes and Sphingomonas (Kaistobacter) were dominant in rhizosphere soil. "Candidatus Nitrososphaera" was enriched in (13)C in rhizosphere soil. Olpidium and Dendryphion were abundant in the (12)C-RNA fraction of roots; Clonostachys was abundant in both roots and rhizosphere soil and heavily (13)C enriched. Cryptococcus was dominant in rhizosphere soil and less abundant, but was (13)C enriched in roots. The patterns of colonization and C acquisition revealed in this study assist in identifying microbial taxa that may be superior competitors for plant-derived carbon in the rhizosphere of Brassica napusIMPORTANCE This microbiome study characterizes the active bacteria and fungi colonizing the roots and rhizosphere soil of Brassica napus using high-throughput sequencing and RNA-stable isotope probing. It identifies taxa assimilating plant-derived carbon following (13)CO2 labeling and compares these with other less active groups not incorporating a plant assimilate. Brassica napus is an economically and globally important oilseed crop, cultivated for edible oil, biofuel production, and phytoextraction of heavy metals; however, it is susceptible to several diseases. The identification of the fungal and bacterial species successfully competing for plant-derived carbon, enabling them to colonize the roots and rhizosphere soil of this plant, should enable the identification of microorganisms that can be evaluated in more detailed functional studies and ultimately be used to improve plant health and productivity in sustainable agriculture.
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| 5. |
- Hagenbo, Andreas, 1987-, et al.
(författare)
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Carbon use efficiency of mycorrhizal fungal mycelium increases during the growing season but decreases with forest age across a Pinus sylvestris chronosequence
- 2019
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Ingår i: Journal of Ecology. - : Wiley. - 0022-0477 .- 1365-2745. ; 107:6, s. 2808-2822
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Tidskriftsartikel (refereegranskat)abstract
- In boreal forest soils, mycelium of mycorrhizal fungi is pivotal for regulating soil carbon (C) cycling and storage. The carbon use efficiency (CUE), a key parameter in C cycling models, can inform on the partitioning of C between microbial biomass, and potential soil storage, and respiration. Here, we test the dependency of mycorrhizal mycelial CUE on stand age and seasonality in managed boreal forest stands. Based on mycelial production and respiration estimates, derived from sequentially incubated ingrowth mesh bags, we estimated CUE on an ecosystem scale during a seasonal cycle and across a chronosequence of eight, 12- to 158-year-old, managed Pinus sylvestris forest stands characterized by decreasing pH and nitrogen (N) availability with increasing age. Mycelial respiration was related to total soil respiration, and by using eddy covariance flux measurements, primary production (GPP) was estimated in the 12- and 100-year-old forests, and related to mycelial respiration and CUE. As hypothesized, mycelial CUE decreased significantly with increasing forest age by c. 65%, supposedly related to a shift in mycorrhizal community composition and a metabolic adjustment reducing their own biomass N demand with declining soil N availability. Furthermore, mycelial CUE increased by a factor of five over the growing season; from 0.03 in May to 0.15 in November, and we propose that the seasonal change in CUE is regulated by a decrease in photosynthate production and temperature. The respiratory contribution of mycorrhizal mycelium ranged from 14% to 26% of total soil respiration, and was on average 17% across all sites and occasions. Synthesis. Carbon is retained more efficiently in mycorrhizal mycelium late in the growing season, when fungi have access to a more balanced C and nutrient supplies. Earlier in the growing season, at maximum host plant photosynthesis, when below-ground C availability is high in relation to N, the fungi respire excess C resulting in lower mycelial carbon use efficiency (CUE). Additionally, C is retained less efficiently in mycorrhizal fungal biomass in older forest stands characterized by more nutrient depleted soils than younger forest stands.
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| 6. |
- Hagenbo, Andreas, et al.
(författare)
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Changes in turnover rather than production regulate biomass of ectomycorrhizal fungal mycelium across a Pinus sylvestris chronosequence
- 2017
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Ingår i: New Phytologist. - : John Wiley & Sons. - 0028-646X .- 1469-8137. ; 214:1, s. 424-431
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Tidskriftsartikel (refereegranskat)abstract
- In boreal forest soils, ectomycorrhizal fungi are fundamentally important for carbon (C) dynamics and nutrient cycling. Although their extraradical mycelium (ERM) is pivotal for processes such as soil organic matter build-up and nitrogen cycling, very little is known about its dynamics and regulation.In this study, we quantified ERM production and turnover, and examined how these two processes together regulated standing ERM biomass in seven sites forming a chronosequence of 12- to 100-yr-old managed Pinus sylvestris forests. This was done by determining ERM biomass, using ergosterol as a proxy, in sequentially harvested in-growth mesh bags and by applying mathematical models.Although ERM production declined with increasing forest age from 1.2 to 0.5 kg ha(-1) d(-1) , the standing biomass increased from 50 to 112 kg ha(-1) . This was explained by a drastic decline in mycelial turnover from seven times to one time per year with increasing forest age, corresponding to mean residence times from 25 d up to 1 yr.Our results demonstrate that ERM turnover is the main factor regulating biomass across differently aged forest stands. Explicit inclusion of ERM parameters in forest ecosystem C models may significantly improve their capacity to predict responses of mycorrhiza-mediated processes to management and environmental changes.
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| 7. |
- Johansson, Veronika A., 1983-, et al.
(författare)
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Partial mycoheterotrophy in Pyroleae : nitrogen and carbon stable isotope signatures during development from seedling to adult
- 2015
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Ingår i: Oecologia. - : Springer Berlin/Heidelberg. - 0029-8549 .- 1432-1939. ; 177:1, s. 203-211
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Tidskriftsartikel (refereegranskat)abstract
- Mycoheterotrophic plants (MHP) are divided into non-photosynthesizing full MHP and green-leaved partial or initial MHP. We investigated 13C and 15N isotope enrichment in five putatively partial MHP species in the tribe Pyroleae (Ericaceae): Chimaphila umbellata, Moneses uniflora, Orthilia secunda, Pyrola chlorantha and Pyrola minor, sampled from forest sites on Öland, Sweden. For M. uniflora and P. chlorantha, we investigated isotope signatures of subterranean seedlings (which are mycoheterotrophic), to examine how the use of seedlings instead of full MHP species (Hypopitys monotropa) as reference species affects the assessment of partial mycoheterotrophy. Our main findings were as follows: (1) All investigated Pyroleae species were enriched in 15N compared to autotrophic reference plants. (2) significant fungal-derived C among the Pyroleae species was found for O. secunda and P. chlorantha. For the remaining species of C. umbellata, M. uniflora and P. minor, isotope signatures suggested adult autotrophy. (3) C and N gains, calculated using seedlings as a full MHP reference, yielded qualitatively similar results as when using H. monotropa as a reference. However, the estimated differences in C and N gains became larger when using seedlings as an MHP reference. (4) A previously unknown interspecific variation in isotope signature occurs during early ontogeny, from seed production to developing seedlings. Our findings suggest that there is a variation among Pyroleae species concerning partial mycoheterotrophy in adults. Adult autotrophy may be most common in Pyroleae species, and these species may not be as dependent on fungal-derived nutrients as some green orchids.
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| 8. |
- Kyaschenko, Julia, et al.
(författare)
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Soil fertility in boreal forest relates to root-driven nitrogen retention and carbon sequestration in the mor layer
- 2019
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Ingår i: New Phytologist. - : Blackwell Science Ltd.. - 0028-646X .- 1469-8137. ; 221:3, s. 1492-1502
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Tidskriftsartikel (refereegranskat)abstract
- Boreal forest soils retain significant amounts of carbon (C) and nitrogen (N) in purely organic layers, but the regulation of organic matter turnover and the relative importance of leaf litter and root‐derived inputs are not well understood.We combined bomb 14C dating of organic matter with stable isotope profiling for Bayesian parameterization of an organic matter sequestration model. C and N dynamics were assessed across annual depth layers (cohorts), together representing 256 yr of organic matter accumulation. Results were related to ecosystem fertility (soil inorganic N, pH and litter C : N).Root‐derived C was estimated to decompose two to 10 times more slowly than leaf litter, but more rapidly in fertile plots. The amounts of C and N per cohort declined during the initial 20 yr of decomposition, but, in older material, the amount of N per cohort increased, indicating N retention driven by root‐derived C.The dynamics of root‐derived inputs were more important than leaf litter dynamics in regulating the variation in organic matter accumulation along a forest fertility gradient. N retention in the rooting zone combined with impeded mining for N in less fertile ecosystems provides evidence for a positive feedback between ecosystem fertility and organic matter turnover.
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| 9. |
- Menichetti, Lorenzo, et al.
(författare)
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Increase in soil stable carbon isotope ratio relates to loss of organic carbon : results from five long-term bare fallow experiments
- 2015
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Ingår i: Oecologia. - New York : Springer Verlag. - 0029-8549 .- 1432-1939. ; 177:3, s. 811-821
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Tidskriftsartikel (refereegranskat)abstract
- Changes in the 12C/13C ratio (expressed as δ13C) of soil organic C (SOC) has been observed over long time scales and with depth in soil profiles. The changes are ascribed to the different reaction kinetics of 12C and 13C isotopes and the different isotopic composition of various SOC pool components. However, experimental verification of the subtle isotopic shifts associated with SOC turnover under field conditions is scarce. We determined δ13C and SOC in soil sampled during 1929–2009 in the Ap-horizon of five European long-term bare fallow experiments kept without C inputs for 27–80 years and covering a latitudinal range of 11°. The bare fallow soils lost 33–65 % of their initial SOC content and showed a mean annual δ13C increase of 0.008–0.024 ‰. The 13C enrichment could be related empirically to SOC losses by a Rayleigh distillation equation. A more complex mechanistic relationship was also examined. The overall estimate of the fractionation coefficient (ε) was −1.2 ± 0.3 ‰. This coefficient represents an important input to studies of long-term SOC dynamics in agricultural soils that are based on variations in 13C natural abundance. The variance of ε may be ascribed to site characteristics not disclosed in our study, but the very similar kinetics measured across our five experimental sites suggest that overall site-specific factors (including climate) had a marginal influence and that it may be possible to isolate a general mechanism causing the enrichment, although pre-fallow land use may have some impact on isotope abundance and fractionation.
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| 10. |
- Ohlsson, Anders, et al.
(författare)
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Stable carbon isotope labelled carbon dioxide as tracer gas for air change rate measurement in a ventilated single zone
- 2017
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Ingår i: Building and Environment. - : Elsevier. - 0360-1323 .- 1873-684X. ; 115, s. 173-181
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Tidskriftsartikel (refereegranskat)abstract
- Carbon dioxide (CO2) has often been used as tracer gas for measurement of the air change rate l (h1 ) in buildings. In such measurements, a correction is required for the presence of indoor CO2, which commonly consists of atmospheric CO2 mixed with human respired CO2. Here, 13C isotope-labelled CO2 was employed as tracer gas, and cavity ring-down spectroscopy (CRDS) was used for simultaneous measurement of the two isotope analogues 12CO2 and 13CO2. This enabled the simultaneous measurement of the 13CO2 tracer gas, with correction for background 13CO2, and the concentration of indoor CO2, allowing for presence of occupants. The background correction procedure assumes that the isotope delta of the background indoor CO2 equals dB ¼ 19‰, based on the prior information that the carbon isotope ratio RB ¼ 13C/12C of all carbon in the bio-geosphere of earth is in the interval 0.010900 < RB < 0.011237. Evidence supported that l could be accurately measured, using the new 13CO2 tracer method, even when the background 13CO2 concentration varied during the measurement time interval, or when the actual dB value differed from the assumed value. The measurement uncertainty for l was estimated at 3%. Uncertainty in l due to uncertainty in RB, uRB(l), was estimated to increase with a decreasing amount of 13CO2 tracer. This indicated that at least 4 ppm tracer must be used, in order to obtain uRB(l)/l < 2%. The temporal resolution of the l measurement was 1.25/l h.
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| 11. |
- Sterkenburg, Erica, et al.
(författare)
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Contrasting effects of ectomycorrhizal fungi on early and late stage decomposition in a boreal forest
- 2018
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Ingår i: The ISME Journal. - : Nature Publishing Group. - 1751-7362 .- 1751-7370. ; 12:9, s. 2187-2197
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Tidskriftsartikel (refereegranskat)abstract
- Symbiotic ectomycorrhizal fungi have received increasing attention as regulators of below-ground organic matter storage. They are proposed to promote organic matter accumulation by suppressing saprotrophs, but have also been suggested to play an active role in decomposition themselves. Here we show that exclusion of tree roots and associated ectomycorrhizal fungi in a boreal forest increased decomposition of surface litter by 11% by alleviating nitrogen limitation of saprotrophs-a "Gadgil effect". At the same time, root exclusion decreased Mn-peroxidase activity in the deeper mor layer by 91%. Our results show that ectomycorrhizal fungi may hamper short-term litter decomposition, but also support a crucial role of ectomycorrhizal fungi in driving long-term organic matter oxidation. These observations stress the importance of ectomycorrhizal fungi in regulation of below-ground organic matter accumulation. By different mechanisms they may either hamper or stimulate decomposition, depending upon stage of decomposition and location in the soil profile.
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| 12. |
- Vowles, Tage, et al.
(författare)
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Complex effects of mammalian grazing on extramatrical mycelial biomass in the Scandes forest-tundra ecotone
- 2018
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Ingår i: Ecology and Evolution. - : John Wiley & Sons. - 2045-7758. ; 8:2, s. 1019-1030
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Tidskriftsartikel (refereegranskat)abstract
- Mycorrhizal associations are widespread in high-latitude ecosystems and are potentially of great importance for global carbon dynamics. Although large herbivores play a key part in shaping subarctic plant communities, their impact on mycorrhizal dynamics is largely unknown. We measured extramatrical mycelial (EMM) biomass during one growing season in 16-year-old herbivore exclosures and unenclosed control plots (ambient), at three mountain birch forests and two shrub heath sites, in the Scandes forest-tundra ecotone. We also used high-throughput amplicon sequencing for taxonomic identification to investigate differences in fungal species composition. At the birch forest sites, EMM biomass was significantly higher in exclosures (1.36 +/- 0.43g C/m(2)) than in ambient conditions (0.66 +/- 0.17g C/m(2)) and was positively influenced by soil thawing degree-days. At the shrub heath sites, there was no significant effect on EMM biomass (exclosures: 0.72 +/- 0.09g C/m(2); ambient plots: 1.43 +/- 0.94). However, EMM biomass was negatively related to Betula nana abundance, which was greater in exclosures, suggesting that grazing affected EMM biomass positively. We found no significant treatment effects on fungal diversity but the most abundant ectomycorrhizal lineage/cortinarius, showed a near-significant positive effect of herbivore exclusion (p=.08), indicating that herbivory also affects fungal community composition. These results suggest that herbivory can influence fungal biomass in highly context-dependent ways in subarctic ecosystems. Considering the importance of root-associated fungi for ecosystem carbon balance, these findings could have far-reaching implications.
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| 13. |
- Wallander, Håkan, et al.
(författare)
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The Importance of Ectomycorrhizal Networks for Nutrient Retention and Carbon Sequestration in Forest Ecosystems
- 2015
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Ingår i: Mycorrhizal networks. - Dordrecht : Springer. - 9789401773959 - 9789401773942 ; , s. 69-90
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Bokkapitel (refereegranskat)abstract
- Extramatrical mycelium (EMM) of mycorrhizal fungi have a fundamental role in carbon (C) cycling in forest ecosystems. This carbon is used for building extensive mycelial networks in the soil as well as for metabolic activity related to nutrient uptake. Here we discuss the factors that regulate the production and turnover of EMM and its role in soil C dynamics and nitrogen retention. C availability seems to be the key factor determining EMM production and possibly its standing biomass in forests but direct effects of mineral nutrient availability on the EMM can also be important. There is great uncertainty about the rate of turnover of EMM, and the increasing evidence that residues of EM fungi play a major role in the formation of stable N and C in soil organic matter highlights the need to include mycorrhizal effects in models of global soil C stores.
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| 14. |
- Weber, Michael E., et al.
(författare)
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200,000 years of monsoonal history recorded on the lower Bengal Fan - strong response to insolation forcing
- 2018
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Ingår i: Global and Planetary Change. - : Elsevier. - 0921-8181 .- 1872-6364. ; 166, s. 107-119
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Tidskriftsartikel (refereegranskat)abstract
- We conducted a multidisciplinary study to provide the stratigraphic and palaeoclimatic context of monsoonal rainfall dynamics and their responses to orbital forcing for the Bay of Bengal. Using sediment lightness we established an age model at orbital resolution for International Ocean Discovery Programme (IODP) Core U1452C-1H that covers the last 200 ka in the lower Bengal Fan. The low-resolution delta O-18 of G. sacculifer is consistent with global delta O-18 records, at least for major glacial-to-interglacial transitions. The variability of total organic carbon, total nitrogen, and the delta C-13 composition of organic matter indicate the marine origin of organic matter. Marine primary productivity likely increased during insolation minima, indicative for an enhanced NE monsoon during glacials and stadials. Pristine insolation forcing is also documented for wet-bulk density, red green color variability, and grain-size variations, indicating that darker and coarser-grained material deposited at higher sedimentation rates during insolation minima. Stronger NE monsoon likely amplified ocean-atmosphere interactions over the Indian Ocean, leading to stronger upwelling through shoaling the thermocline, and higher delivery of sediment to the Bay of Bengal due to higher soil erosion on land. In addition, lower glacial and stadial sea levels as well as stronger westward surface circulation favored delivery of coarser-grained fluvial material to the lower Bengal Fan. At the same time the stronger NE monsoon might have increased the aeolian supply. Total inorganic carbon, the Ca/Ti ratio, and biogenic silica vary dominantly on obliquity frequencies, suggesting mobilization and transport of lithogenic material primarily during lowered sea levels and/or higher influence of the Northern Hemisphere westerlies on the dust transport from the Tibetan Plateau. The close resemblance of sediment lightness and the climate record of Antarctic ice cores over multiple glacial cycles indicate close relationship between high southern latitude and tropical Asian climate through shifts in position of the Intertropical Convergence Zone. The Bengal Fan monsoonal record shows very clear and strict responses to insolation forcing in the lower part from -200 ka to the Younger Toba Tuff during Marine Isotope Stage (MIS) 7 - 5, and less distinct response patterns after deposition of the ash during MIS 4- 2, consistent with low-amplitude changes in insolation.
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