| 1. |
- Lembrechts, Jonas J., et al.
(författare)
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SoilTemp : A global database of near-surface temperature
- 2020
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Ingår i: Global Change Biology. - : Wiley. - 1354-1013 .- 1365-2486. ; 26:11, s. 6616-6629
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Tidskriftsartikel (refereegranskat)abstract
- Current analyses and predictions of spatially explicit patterns and processes in ecology most often rely on climate data interpolated from standardized weather stations. This interpolated climate data represents long-term average thermal conditions at coarse spatial resolutions only. Hence, many climate-forcing factors that operate at fine spatiotemporal resolutions are overlooked. This is particularly important in relation to effects of observation height (e.g. vegetation, snow and soil characteristics) and in habitats varying in their exposure to radiation, moisture and wind (e.g. topography, radiative forcing or cold-air pooling). Since organisms living close to the ground relate more strongly to these microclimatic conditions than to free-air temperatures, microclimatic ground and near-surface data are needed to provide realistic forecasts of the fate of such organisms under anthropogenic climate change, as well as of the functioning of the ecosystems they live in. To fill this critical gap, we highlight a call for temperature time series submissions to SoilTemp, a geospatial database initiative compiling soil and near-surface temperature data from all over the world. Currently, this database contains time series from 7,538 temperature sensors from 51 countries across all key biomes. The database will pave the way toward an improved global understanding of microclimate and bridge the gap between the available climate data and the climate at fine spatiotemporal resolutions relevant to most organisms and ecosystem processes.
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| 2. |
- Blume-Werry, Gesche, 1985-, et al.
(författare)
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Don't drink it, bury it : comparing decomposition rates with the tea bag index is possible without prior leaching
- 2021
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Ingår i: Plant and Soil. - : Springer. - 0032-079X .- 1573-5036. ; 465:1-2, s. 613-621
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Tidskriftsartikel (refereegranskat)abstract
- Purpose: The standardized ‘Tea Bag Index’ enables comparisons of litter decomposition rates, a key component of carbon cycling, across ecosystems. However, tea ‘litter’ may leach more than other plant litter, skewing comparisons of decomposition rates between sites with differing moisture conditions. Therefore, some researchers leach tea bags before field incubation. This decreases comparability between studies, and it is unclear if this modification is necessary.Methods: We submerged green and rooibos tea bags in water, and measured their leaching losses over time (2 min – 72 h). We also compared leaching of tea to leaf and root litter from other plant species, and finally, compared mass loss of pre-leached and standard tea bags in a fully factorial incubation experiment differing in soil moisture (wet and dry) and soil types (sand and peat).Results: Both green and rooibos tea leached strongly, levelling-off at about 40% and 20% mass loss, respectively. Mass loss from leaching was highest in green tea followed by leaves of other plants, then rooibos tea, and finally roots of other plants. When incubated for 4 weeks, both teas showed lower mass loss when they had been pre-leached compared to standard tea bags. However, these differences between standard and pre-leached tea bags were similar in moist vs. dry soils, both in peat and in sand.Conclusions: Thus, despite large leaching losses, we conclude that leaching tea bags before field or lab incubation is not necessary to compare decomposition rates between systems, ranging from as much as 5% to 25% soil moisture.
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| 3. |
- Haesen, Stef, et al.
(författare)
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ForestClim : Bioclimatic variables for microclimate temperatures of European forests
- 2023
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Ingår i: Global Change Biology. - : John Wiley & Sons. - 1354-1013 .- 1365-2486. ; 29:11, s. 2886-2892
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Tidskriftsartikel (refereegranskat)abstract
- Microclimate research gained renewed interest over the last decade and its importance for many ecological processes is increasingly being recognized. Consequently, the call for high-resolution microclimatic temperature grids across broad spatial extents is becoming more pressing to improve ecological models. Here, we provide a new set of open-access bioclimatic variables for microclimate temperatures of European forests at 25 x 25 m2 resolution.
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| 4. |
- Malyshev, Andrey V., et al.
(författare)
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Warming nondormant tree roots advances aboveground spring phenology in temperate trees
- 2023
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Ingår i: New Phytologist. - : John Wiley & Sons. - 0028-646X .- 1469-8137. ; 240:6, s. 2276-2287
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Tidskriftsartikel (refereegranskat)abstract
- Climate warming advances the onset of tree growth in spring, but above- and belowground phenology are not always synchronized. These differences in growth responses may result from differences in root and bud dormancy dynamics, but root dormancy is largely unexplored. We measured dormancy in roots and leaf buds of Fagus sylvatica and Populus nigra by quantifying the warming sum required to initiate above- and belowground growth in October, January and February. We furthermore carried out seven experiments, manipulating only the soil and not air temperature before or during tree leaf-out to evaluate the potential of warmer roots to influence budburst timing using seedlings and adult trees of F. sylvatica and seedlings of Betula pendula. Root dormancy was virtually absent in comparison with the much deeper winter bud dormancy. Roots were able to start growing immediately as soils were warmed during the winter. Interestingly, higher soil temperature advanced budburst across all experiments, with soil temperature possibly accounting for c. 44% of the effect of air temperature in advancing aboveground spring phenology per growing degree hour. Therefore, differences in root and bud dormancy dynamics, together with their interaction, likely explain the nonsynchronized above- and belowground plant growth responses to climate warming.
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| 5. |
- Peters, Bo, et al.
(författare)
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As good as human experts in detecting plant roots in minirhizotron images but efficient and reproducible : the convolutional neural network “RootDetector”
- 2023
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Ingår i: Scientific Reports. - : Nature Publishing Group. - 2045-2322. ; 13:1
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Tidskriftsartikel (refereegranskat)abstract
- Plant roots influence many ecological and biogeochemical processes, such as carbon, water and nutrient cycling. Because of difficult accessibility, knowledge on plant root growth dynamics in field conditions, however, is fragmentary at best. Minirhizotrons, i.e. transparent tubes placed in the substrate into which specialized cameras or circular scanners are inserted, facilitate the capture of high-resolution images of root dynamics at the soil-tube interface with little to no disturbance after the initial installation. Their use, especially in field studies with multiple species and heterogeneous substrates, though, is limited by the amount of work that subsequent manual tracing of roots in the images requires. Furthermore, the reproducibility and objectivity of manual root detection is questionable. Here, we use a Convolutional Neural Network (CNN) for the automatic detection of roots in minirhizotron images and compare the performance of our RootDetector with human analysts with different levels of expertise. Our minirhizotron data come from various wetlands on organic soils, i.e. highly heterogeneous substrates consisting of dead plant material, often times mainly roots, in various degrees of decomposition. This may be seen as one of the most challenging soil types for root segmentation in minirhizotron images. RootDetector showed a high capability to correctly segment root pixels in minirhizotron images from field observations (F1 = 0.6044; r2 compared to a human expert = 0.99). Reproducibility among humans, however, depended strongly on expertise level, with novices showing drastic variation among individual analysts and annotating on average more than 13-times higher root length/cm2 per image compared to expert analysts. CNNs such as RootDetector provide a reliable and efficient method for the detection of roots and root length in minirhizotron images even from challenging field conditions. Analyses with RootDetector thus save resources, are reproducible and objective, and are as accurate as manual analyses performed by human experts.
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| 6. |
- Piecha, Marc, et al.
(författare)
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Plant roots but not hydrology control microbiome composition and methane flux in temperate fen mesocosms
- 2024
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Ingår i: Science of the Total Environment. - : Elsevier. - 0048-9697 .- 1879-1026. ; 940
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Tidskriftsartikel (refereegranskat)abstract
- The rewetting of formerly drained peatlands can help to counteract climate change through the reduction of CO2 emissions. However, this can lead to resuming CH4 emissions due to changes in the microbiome, favoring CH4-producing archaea. How plants, hydrology and microbiomes interact as ultimate determinants of CH4 dynamics is still poorly understood. Using a mesocosm approach, we studied peat microbiomes, below-ground root biomass and CH4 fluxes with three different water level regimes (stable high, stable low and fluctuating) and four different plant communities (bare peat, Carex rostrata, Juncus inflexus and their mixture) over the course of one growing season. A significant difference in microbiome composition was found between mesocosms with and without plants, while the difference between plant species identity or water regimes was rather weak. A significant difference was also found between the upper and lower peat, with the difference increasing as plants grew. By the end of the growing season, the methanogen relative abundance was higher in the sub-soil layer, as well as in the bare peat and C. rostrata pots, as compared to J. inflexus or mixture pots. This was inversely linked to the larger root area of J. inflexus. The root area also negatively correlated with CH4 fluxes which positively correlated with the relative abundance of methanogens. Despite the absence or low abundance of methanotrophs in many samples, the integration of methanotroph abundance improved the quality of the correlation with CH4 fluxes, and methanogens and methanotrophs together determined CH4 fluxes in a structural equation model. However, water regime showed no significant impact on plant roots and methanogens, and consequently, on CH4 fluxes. This study showed that plant roots determined the microbiome composition and, in particular, the relative abundance of methanogens and methanotrophs, which, in interaction, drove the CH4 fluxes.
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| 7. |
- Schwieger, Sarah, et al.
(författare)
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Rewetting prolongs root growing season in minerotrophic peatlands and mitigates negative drought effects
- 2022
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Ingår i: Journal of Applied Ecology. - : John Wiley & Sons. - 0021-8901 .- 1365-2664. ; 59:8, s. 2106-2116
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Tidskriftsartikel (refereegranskat)abstract
- Root phenology influences the timing of plant resource acquisition and carbon fluxes into the soil. This is particularly important in fen peatlands, in which peat is primarily formed by roots and rhizomes of vascular plants. However, most fens in Central Europe are drained for agriculture, leading to large carbon losses, and further threatened by increasing frequency and intensity of droughts. Rewetting fens aims to restore the original carbon sink, but how root phenology is affected by drainage and rewetting is largely unknown.We monitored root phenology with minirhizotrons in drained and rewetted fens (alder forest, percolation fen and coastal fen) as well as its soil temperature and water table depth during the 2018 drought. For each fen type, we studied a drained site and a site that was rewetted ~25 years ago, while all the sites studied had been drained for almost a century.Overall, the growing season was longer with rewetting, allowing roots to grow over a longer period in the year and have a higher root production than under drainage. With increasing depth, the growing season shifted to later in time but remained a similar length, and the relative importance of soil temperature for root length changes increased with soil depth.Synthesis and applications: Rewetting extended the growing season of roots, highlighting the importance of phenology in explaining root productivity in peatlands. A longer growing season allows a longer period of carbon sequestration in form of root biomass and promotes the peatlands' carbon sink function, especially through longer growth in deep soil layers. Thus, management practices that focus on rewetting peatland ecosystems are necessary to maintain their function as carbon sinks, particularly under drought conditions, and are a top priority to reduce carbon emissions and address climate change.
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| 8. |
- Schwieger, Sarah, et al.
(författare)
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Wetter is Better : Rewetting of Minerotrophic Peatlands Increases Plant Production and Moves Them Towards Carbon Sinks in a Dry Year
- 2021
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Ingår i: Ecosystems (New York. Print). - : Springer. - 1432-9840 .- 1435-0629. ; 24:5, s. 1093-1109
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Tidskriftsartikel (refereegranskat)abstract
- Peatlands are effective carbon sinks as more biomass is produced than decomposed under the prevalent anoxic conditions. Draining peatlands coupled with warming releases stored carbon, and subsequent rewetting may or may not restore the original carbon sink. Yet, patterns of plant production and decomposition in rewetted peatlands and how they compare to drained conditions remain largely unexplored. Here, we measured annual above- and belowground biomass production and decomposition in three different drained and rewetted peatland types: alder forest, percolation fen and coastal fen during an exceptionally dry year. We also used standard plant material to compare decomposition between the sites, regardless of the decomposability of the local plant material. Rewetted sites showed higher root and shoot production in the percolation fen and higher root production in the coastal fen, but similar root and leaf production in the alder forest. Decomposition rates were generally similar in drained and rewetted sites, only in the percolation fen and alder forest did aboveground litter decompose faster in the drained sites. The rewetted percolation fen and the two coastal sites had the highest projected potential for organic matter accumulation. Roots accounted for 23–66% of total biomass production, and belowground biomass, rather than aboveground biomass, was particularly important for organic matter accumulation in the coastal fens. This highlights the significance of roots as main peat-forming element in these graminoid-dominated fen peatlands and their crucial role in carbon cycling, and shows that high biomass production supported the peatlands’ function as carbon sink even during a dry year.
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