| 1. |
- Mohr, S., et al.
(författare)
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The alternative serotonin transporter promoter P2 impacts gene function in females with irritable bowel syndrome
- 2021
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Ingår i: Journal of Cellular and Molecular Medicine. - : Wiley. - 1582-1838 .- 1582-4934. ; 25:16, s. 8047-8061
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Tidskriftsartikel (refereegranskat)abstract
- Irritable bowel syndrome (IBS) is a gut-brain disorder in which symptoms are shaped by serotonin acting centrally and peripherally. The serotonin transporter gene SLC6A4 has been implicated in IBS pathophysiology, but the underlying genetic mechanisms remain unclear. We sequenced the alternative P2 promoter driving intestinal SLC6A4 expression and identified single nucleotide polymorphisms (SNPs) that were associated with IBS in a discovery sample. Identified SNPs built different haplotypes, and the tagging SNP rs2020938 seems to associate with constipation-predominant IBS (IBS-C) in females. rs2020938 validation was performed in 1978 additional IBS patients and 6,038 controls from eight countries. Meta-analysis on data from 2,175 IBS patients and 6,128 controls confirmed the association with female IBS-C. Expression analyses revealed that the P2 promoter drives SLC6A4 expression primarily in the small intestine. Gene reporter assays showed a functional impact of SNPs in the P2 region. In silico analysis of the polymorphic promoter indicated differential expression regulation. Further follow-up revealed that the major allele of the tagging SNP rs2020938 correlates with differential SLC6A4 expression in the jejunum and with stool consistency, indicating functional relevance. Our data consolidate rs2020938 as a functional SNP associated with IBS-C risk in females, underlining the relevance of SLC6A4 in IBS pathogenesis.
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| 2. |
- Joost, J.-P., et al.
(författare)
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Löwdin's symmetry dilemma within Green functions theory for the one-dimensional Hubbard model
- 2021
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Ingår i: Contributions to Plasma Physics. - : Wiley. - 0863-1042 .- 1521-3986.
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Tidskriftsartikel (refereegranskat)abstract
- The energy gap of correlated Hubbard clusters is well studied for one-dimensional systems using analytical methods and density-matrix-renormalization-group (DMRG) simulations. Beyond 1D, however, exact results are available only for small systems by quantum Monte Carlo. For this reason and, due to the problems of DMRG in simulating 2D and 3D systems, alternative methods such as Green functions combined with many-body approximations (GFMBA), that do not have this restriction, are highly important. However, it has remained open whether the approximate character of GFMBA simulations prevents the computation of the Hubbard gap. Here we present new GFMBA results that demonstrate that GFMBA simulations are capable of producing reliable data for the gap which agrees well with the DMRG benchmarks in 1D. An interesting observation is that the accuracy of the gap can be significantly increased when the simulations give up certain symmetry restriction of the exact system, such as spin symmetry and spatial homogeneity. This is seen as manifestation and generalization of the “symmetry dilemma” introduced by Löwdin for Hartree–Fock wave function calculations.
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