| 1. |
- Ilagan, R P, et al.
(författare)
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Femtosecond time-resolved absorption spectroscopy of astaxanthin in solution and in alpha-crustacyanin
- 2005
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Ingår i: The Journal of Physical Chemistry Part A: Molecules, Spectroscopy, Kinetics, Environment and General Theory. - : American Chemical Society (ACS). - 1520-5215. ; 109:14, s. 3120-3127
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Tidskriftsartikel (refereegranskat)abstract
- Steady-state absorption and femtosecond time-resolved spectroscopic studies have been carried out on astaxanthin dissolved in CS2, methanol, and acetonitrile, and in purified alpha-crustacyanin. The spectra of the S-0 -> S-2 and S-1 -> S-n transitions were found to be similarly dependent on solvent environment. The dynamics of the excited-state decay processes were analyzed with both single wavelength and global fitting procedures. In solution, the S-1 lifetime of astaxanthin was found to be similar to 5 ps and independent of solvent. In alpha-crustacyanin, the lifetime was noticeably shorter at similar to 1.8 ps. Both fitting procedures led to the conclusion that the lifetime of the S-2 state was either comparable to or shorter than the instrument response time. The data support the idea that dimerization of astaxanthin in alpha-crustacyanin is the primary molecular basis for the bathochromic shift of the S-0 -> S-2 and S-1 - S-n transitions. Planarization of the astaxanthin molecule, which leads to a longer effective pi-electron conjugated chain and a lower S-1 energy, accounts for the shorter tau(1) in the protein.
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| 2. |
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| 3. |
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| 4. |
- Jansson, T, et al.
(författare)
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Automated correction of linear deformation due to sectioning in serial micrographs.
- 1995
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Ingår i: Journal of microscopy. - 0022-2720. ; 177:Pt 2, s. 119-27
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Tidskriftsartikel (refereegranskat)abstract
- This paper describes an objective and automatic method for detection and correction of sectioning deformations in digitized micrographs, as well as an evaluation of the method applied to light and electron microscopic images of semi-thin and ultra-thin serial sections from brain cortex. The detection is based on matching of image subregions and the deformation model is bi-linear, i.e. two first-order polynomials are used for modelling compression/expansion in perpendicular directions. The procedure is applicable to prealigned serial two-dimensional sections and is primarily aimed at three-dimensional reconstruction of tissue samples consisting of a large number of cells with random distribution and morphology.
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| 5. |
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| 6. |
- Knigge, U., et al.
(författare)
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ENETS Consensus Recommendations for the Standards of Care in Neuroendocrine Neoplasms : Follow-Up and Documentation
- 2017
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Ingår i: Neuroendocrinology. - : S. Karger AG. - 0028-3835 .- 1423-0194. ; 105:3, s. 310-319
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Tidskriftsartikel (refereegranskat)abstract
- ENETS consensus recommendations for the standards of care in neuroendocrine neoplasms (NEN) concerning follow-up and documentation are considered in this review. The documentation of patients with NEN should include the most relevant data characterizing an individual patient from the first contact with his/her physician/hospital until his/her last presentation during follow-up. It is advocated that follow-up occurs in specialized NEN centers with regular NEN tumor boards with expert panels. The follow-up should be in accordance with the ENETS consensus guidelines from 2011 and 2016, the present and coming WHO classification and ENETS/UICC recommendations for TNM staging. The recommendations for follow-up in patients with thymic, bronchopulmonary and gastroenteropancreatic NEN are given in Table 1. However, it should be stressed that evidence-based studies for follow-up are largely missing.
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| 7. |
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| 8. |
- Meyer, Tobias, et al.
(författare)
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A compact microscope setup for multimodal nonlinear imaging in clinics and its application to disease diagnostics
- 2013
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Ingår i: Analyst. - : Royal Society of Chemistry (RSC). - 1364-5528. ; 138:14, s. 4048-4057
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Tidskriftsartikel (refereegranskat)abstract
- The past years have seen increasing interest in nonlinear optical microscopic imaging approaches for the investigation of diseases due to the method's unique capabilities of deep tissue penetration, 3D sectioning and molecular contrast. Its application in clinical routine diagnostics, however, is hampered by large and costly equipment requiring trained staff and regular maintenance, hence it has not yet matured to a reliable tool for application in clinics. In this contribution implementing a novel compact fiber laser system into a tailored designed laser scanning microscope results in a small footprint easy to use multimodal imaging platform enabling simultaneously highly efficient generation and acquisition of second harmonic generation (SHG), two-photon excited fluorescence (TPEF) as well as coherent anti-Stokes Raman scattering (CARS) signals with optimized CARS contrast for lipid imaging for label-free investigation of tissue samples. The instrument combining a laser source and a microscope features a unique combination of the highest NIR transmission and a fourfold enlarged field of view suited for investigating large tissue specimens. Despite its small size and turnkey operation rendering daily alignment dispensable the system provides the highest flexibility, an imaging speed of 1 megapixel per second and diffraction limited spatial resolution. This is illustrated by imaging samples of squamous cell carcinoma of the head and neck (HNSCC) and an animal model of atherosclerosis allowing for a complete characterization of the tissue composition and morphology, i.e. the tissue's morphochemistry. Highly valuable information for clinical diagnostics, e. g. monitoring the disease progression at the cellular level with molecular specificity, can be retrieved. Future combination with microscopic probes for in vivo imaging or even implementation in endoscopes will allow for in vivo grading of HNSCC and characterization of plaque deposits towards the detection of high risk plaques.
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| 9. |
- Meyer, Tobias, et al.
(författare)
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Expanding Multimodal Microscopy by High Spectral Resolution Coherent Anti-Stokes Raman Scattering Imaging for Clinical Disease Diagnostics
- 2013
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Ingår i: Analytical Chemistry. - : American Chemical Society (ACS). - 1520-6882 .- 0003-2700. ; 85:14, s. 6703-6715
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Tidskriftsartikel (refereegranskat)abstract
- Over the past years fast label-free nonlinear imaging modalities providing molecular contrast of endogenous disease markers with subcellular spatial resolution have been emerged. However, applications of these imaging modalities in clinical settings are still at the very beginning. This is because single nonlinear imaging modalities such as second-harmonic generation (SHG) and two-photon excited fluorescence (TPEF) have only limited value for diagnosing diseases due to the small number of endogenous markers. Coherent anti-Stokes Raman scattering (CARS) microscopy on the other hand can potentially be added to SHG and TPEF to visualize a much broader range of marker molecules. However, CARS requires a second synchronized laser source and the detection of a certain wavenumber range of the vibrational spectrum to differentiate multiple molecules, which results in increased experimental complexity and often inefficient excitation of SHG and TPEF signals. Here we report the application of a novel near-infrared (NIR) fiber laser of 1 MHz repetition rate, 65 ps pulse duration, and 1 cm(-1) spectral resolution to realize an efficient but experimentally simple SGH/TPEF/multiplex CARS multimodal imaging approach for a label-free characterization of composition of complex tissue samples. This is demonstrated for arterial tissue specimens demonstrating differentiation of elastic fibers, triglycerides, collagen, myelin, cellular cytoplasm, and lipid droplets by analyzing the CARS spectra within the C-H stretching region only. A novel image analysis approach for multispectral CARS data based on colocalization allows correlating spectrally distinct pixels to morphologic structures. Transfer of this highly precise but compact and simple to use imaging approach into clinical settings is expected in the near future.
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| 10. |
- Pascher, R, et al.
(författare)
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Computer-assisted 3D analysis of cell distributions in the normal and epileptic cerebral cortex: description of a methodology in progress.
- 1993
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Ingår i: Computerized medical imaging and graphics : the official journal of the Computerized Medical Imaging Society. - 0895-6111. ; 17:4-5, s. 405-10
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Tidskriftsartikel (refereegranskat)abstract
- This paper describes software routines that (a) visualizes a stack of several thousands of aligned sequential photographic two-dimensional (2D) images stored in an image processing system; (b) creates a data base containing information about objects identified sequentially from the 2D images; (c) transfers the data base to a graphical terminal; (d) reconstructs a three-dimensional (3D) object space; and (e) supports on-line interaction between the image processing system and the graphical terminal. As an application example, the cell content of a prism of motor cerebral cortex of the cat is reconstructed. Preliminary results from reconstructing human epileptic temporal cortex (cortical microdysgenesia) are also reported.
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| 11. |
- Skoglund, Thomas, 1969, et al.
(författare)
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3D reconstruction of biological objects from sequential image planes--applied on cerebral cortex from cat.
- 1993
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Ingår i: Computerized medical imaging and graphics : the official journal of the Computerized Medical Imaging Society. - 0895-6111. ; 17:3, s. 165-74
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Tidskriftsartikel (refereegranskat)abstract
- A prism of cat cerebral cortex was reconstructed with a method for three-dimensional (3D) representation of biological objects. A series of 918 semithin sections were digitized into an image analysis system. The images were aligned and analyzed, and a data base with the coordinates and a classification of the cells was created. The data base (i.e., the cortical prism) was visualized in a 3D graphic terminal, and parameters such as columnar and lamellar organization, clustering, and cell density were analyzed. A neuronal perikaryon and its neurites was reconstructed and shown together with the cortical prism.
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| 12. |
- Skoglund, Thomas, 1969, et al.
(författare)
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A method for 3D reconstruction of neuronal processes using semithin serial sections displayed as a cinematographic sequence.
- 1995
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Ingår i: Journal of neuroscience methods. - 0165-0270. ; 61:1-2, s. 105-11
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Tidskriftsartikel (refereegranskat)abstract
- In order to study the organization and distribution of dendrites and axons in the cerebral cortex, we have developed a computer-assisted method for 3D reconstruction of neuronal processes based on serial light microscopic images displayed as a continuous sequence. A series of tangential sections (0.65 micron thick) through rat parietal cortex was aligned, digitized into the computer and then used to build a sequence (stack) of images which was stored to a digital real-time video disk. Apical dendrites located in dendritic bundles in laminae III and IV were traced through the sequence. Two tracing modes were tested: (1) cinematographic mode, in which the image stack was displayed continuously and automatically by the computer at various preset speeds (max. speed: 25 images/s) and (2) stepping mode, in which the interval between each image was varied manually according to the choice of the operator. Coordinates were stored in a database and used to build a 3D reconstruction where apical dendrites were displayed as wires or tubes. Tracing in cinematographic mode was about 3 times faster than tracing in stepping mode. We believe that the former mode exploits the built in 'filtering' capacity of the visual system to perform temporal averaging.
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| 13. |
- Skoglund, Thomas, 1969, et al.
(författare)
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Aspects of the organization of neurons and dendritic bundles in primary somatosensory cortex of the rat
- 2004
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Ingår i: Neurosci Res. - : Elsevier BV. - 0168-0102. ; 50:2, s. 189-98
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Tidskriftsartikel (refereegranskat)abstract
- In order to analyze some aspects of the spatial organization in the primary somatosensory cortex of the rat, we have reconstructed the positions of bundles of apical dendrites and neurons in a cortical prisms measuring 0.5 mm x 0.4 mm x cortical thickness, with special reference to a hypothetical columnar organization. Complete series of semithin (0.65 microm) sections were cut, tangentially from the pial surface down to the white matter, stained and digitizalized into a computer and represented as a stack of 2D images. The mean neuron density (N(V)-value) was (60 x 10(3) +/- 15 x 10(3)) neurons/mm3. The mean number of neurons beneath 1 mm2 of cortical surface (NC-value) was (113 x 10(3) +/- 8 x 10(3)) neurons/mm2. Well-defined bundles of apical dendrites emanating from layer V pyramidal cells were observed. The bundles consisted of 3-12 (mean 5 +/- 2) dendrites. The dendrites within a bundle converged while ascending towards the pial surface and reached a maximal close packing in layer IV. Superficially, the packing density decreased again. The mutual positions of the dendrites within the bundles shifted only slightly along their course towards the pial surface. The occurrence of bundles in tangential sections through layer IV was about 190 bundles/mm2 and the average number of neurons per bundle was estimated at approximately 600. However, when calculating Voronoi-diagrams, the number of neurons, which with this mathematical technique, is ascribed to each of the reconstructed dendritic bundles, varied between 200 and 1000. The possibility that the dendritic bundles are centers in cortical cell modules is discussed.
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| 14. |
- Skoglund, Thomas, 1969, et al.
(författare)
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Heterogeneity in the columnar number of neurons in different neocortical areas in the rat.
- 1996
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Ingår i: Neuroscience letters. - 0304-3940. ; 208:2, s. 97-100
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Tidskriftsartikel (refereegranskat)abstract
- We have investigated the number of neurons in three neocortical areas of the rat brain. Our results challenge the uniformity concept proposed by Rockel et al. [Brain, 103 (1980) 221-244]. Area Fr1, HL and Oc2 (primary motor, primary somatosensory and secondary visual cortex) from Sprague-Dawley rats were examined. The brains were glutaraldehyde fixed, sectioned in 50 mu m thick sagittal slices and stained in Richardson's solution. The counting was carried out using a computerized system based on the optical disector. The cortical thickness was measured to be 1.9 mm, 1.9 mm, and 1.4 mm in area Fr1, HL, and Oc2, respectively. The number of neurons under 1 mm2 cortical surface was calculated to be 91 100 in Fr1, 133 500 in HL and 106 100 in Oc2. The number of neurons in a volume of tissue 30 x 25 mu m through the depth of the cortex was calculated to be 68 in Fr1, 100 in HL and 80 in Oc2. The density of neurons was calculated to be 48 500 neurons/mm3 in Fr1, 69 400 neurons/mm3 in HL and 76,900 neurons/mm3 in Oc2. There were significant (P < 0.01) differences between all areas regarding both the number of neurons under a certain area of surface as well as the neuron density. The results indicate that there is no basic uniformity in the number of neurons under a certain area of cortical surface.
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| 15. |
- Skoglund, Thomas, 1969, et al.
(författare)
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The existence of a layer IV in the rat motor cortex.
- 1997
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Ingår i: Cerebral cortex (New York, N.Y. : 1991). - 1047-3211. ; 7:2, s. 178-80
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Tidskriftsartikel (refereegranskat)abstract
- We have reconstructed the laminar pattern of rat primary motor cortex (Fr1) using a computerized analysis system based on the so-called 'optical dissector'. Data were visualized on a graphics terminal. In contrast to current views, which state that there is no prominent layer IV in the motor cortex of the rat, our method of analysis revealed a genuine layer IV consisting of densely packed small neurons.
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| 16. |
- Wu, Fan, et al.
(författare)
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Optical cavity-mediated exciton dynamics in photosynthetic light harvesting 2 complexes
- 2022
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Ingår i: Nature Communications. - : Springer Science and Business Media LLC. - 2041-1723. ; 13:1
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Tidskriftsartikel (refereegranskat)abstract
- Strong light-matter interaction leads to the formation of hybrid polariton states and alters the photophysical dynamics of organic materials and biological systems without modifying their chemical structure. Here, we experimentally investigated a well-known photosynthetic protein, light harvesting 2 complexes (LH2) from purple bacteria under strong coupling with the light mode of a Fabry-Perot optical microcavity. Using femtosecond pump probe spectroscopy, we analyzed the polariton dynamics of the strongly coupled system and observed a significant prolongation of the excited state lifetime compared with the bare exciton, which can be explained in terms of the exciton reservoir model. Our findings indicate the potential of tuning the dynamic of the whole photosynthetic unit, which contains several light harvesting complexes and reaction centers, with the help of strong exciton-photon coupling, and opening the discussion about possible design strategies of artificial photosynthetic devices.
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