| 1. |
- Atherton, Sarah, et al.
(författare)
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Wide distributions and cryptic diversity within a Microstomum (Platyhelminthes) species complex
- 2018
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Ingår i: Zoologica Scripta. - : Wiley. - 0300-3256 .- 1463-6409. ; 47, s. 486-498
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Tidskriftsartikel (refereegranskat)abstract
- Microstomum lineare is a common species of fresh and brackish waters found world-wide. Three genes (18S, CO1 and ITS) were sequenced from specimens of M. lineare collected from four countries, and the levels of cryptic diversity and genetic structuring were assessed. Results showed M. lineare has very wide haplotype distributions suggesting higher than expected dispersal capabilities. In addition, three new species were described on the basis of molecular taxonomy: Microstomum artoisi sp. nov., Microstomum tchaikovskyi sp. nov. and Microstomum zicklerorum sp. nov.
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| 2. |
- Bachmann, L., et al.
(författare)
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Systematics and biodiversity research in the era of genomics
- 2016
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Ingår i: Zoologica Scripta. - : Wiley. - 0300-3256 .- 1463-6409. ; 45, s. 3-4
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Tidskriftsartikel (refereegranskat)abstract
- On 5 November 2015, The Norwegian Academy of Sciences and Letters (DNVA) and the editors of the Zoologica Scripta invited to the one-day symposium ‘Systematics and Biodiversity Research in the Era of Genomics’. Some 80 scientists gathered at the premises of the DNVA in Oslo, Norway, to explore and discuss the current trends and future developments in the field of Animal Systematics. © 2016 The Authors. Zoologica Scripta published by John Wiley & Sons Ltd on behalf of Royal Swedish Academy of Sciences.
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| 3. |
- Cibois, A., et al.
(författare)
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Comprehensive phylogeny of the laughingthrushes and allies (Aves, Leiothrichidae) and a proposal for a revised taxonomy
- 2018
-
Ingår i: Zoologica Scripta. - : Wiley. - 0300-3256 .- 1463-6409. ; 47:4, s. 428-440
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Tidskriftsartikel (refereegranskat)abstract
- DNA phylogenies have gradually shed light on the phylogenetic relationships of the large babbler group. We focus in this study on the family Leiothrichidae (laughingthrushes and song babblers), which represents the largest clade of babblers in terms of species diversity. Our phylogeny includes all genera and 82% of the recognized species, using mitochondrial and nuclear loci. The sister group to Leiothrichidae is composed of the Pellorneidae (jungle babblers) plus the genus Alcippe. Within Leiothrichidae, four strongly supported primary clades (A-D) are recovered. Clade A includes Grammatoptila, Laniellus and Cutia. Clade B includes a large group of laughingthrushes, all of them classified in Trochalopteron. In Clade C, the two laughingthrushes endemic to southern India, T.fairbanki and T.cachinnans, which have recently been proposed to be placed in the newly erected genus Montecincla, form a sister clade to the group comprising the song babblers (Lioptila, Leiothrix, Heterophasia, Minla, Liocichla, Actinodura, Chrysominla, Siva, and Sibia). Clade D includes the African babblers (Turdoides, Phyllanthus, Kupeornis), Asian relatives (Argya, Acanthoptila, Chatarrhaea) and all remaining laughingthrushes (Garrulax). The time estimates suggest that the early diversification of the Leiothrichidae occurred in the mid-Miocene, a period that corresponds to the diversification of many passerine groups in Asia. A revised taxonomic classification of the family is proposed in the light of these results.
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| 4. |
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| 5. |
- Fuchs, J., et al.
(författare)
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Miocene diversification of an open-habitat predatorial passerine radiation, the shrikes (Aves: Passeriformes: Laniidae)
- 2019
-
Ingår i: Zoologica Scripta. - : Wiley. - 0300-3256 .- 1463-6409. ; 48:5, s. 571-588
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Tidskriftsartikel (refereegranskat)abstract
- Diversification of avifaunas associated with savannah and steppes appears to correlate with open habitats becoming available, starting in the Miocene. Few comparative analyses exist for families for which all species are predominantly adapted to these habitats. One such group is Laniidae (Passeriformes), which are small- to medium-sized predatory passerines known for their distinctive behaviour of impaling prey. We used multispecies coalescent-based and concatenation methods to provide the first complete species-level phylogeny for this group, as well as an estimate of the timing of diversification. Our analyses indicate that Laniidae as currently delimited is not monophyletic, as the genus Eurocephalus is not closely related to the remaining species. The two species currently assigned to the monotypic genera Urolestes and Corvinella are part of the same clade as the Lanius species, and we propose that they are included in the genus Lanius, making Laniidae monogeneric. The initial diversification of the clade is inferred to have occurred very rapidly, starting about 7.2-9.1 million years ago, timing depending on calibration method, but in either case coinciding with the expansion of C4 grasses. An African origin is inferred in the biogeographic analysis. In the redefined Laniidae, cooperative breeding is inferred to be restricted to a single clade, characterized by gregarious behaviour and rallying. Migratory behaviour evolved multiple times within the family.
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| 6. |
- Goicoechea, Noemi, et al.
(författare)
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Recovering phylogenetic signal from frog mating calls
- 2010
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Ingår i: Zoologica Scripta. - : Wiley. - 0300-3256 .- 1463-6409. ; 39:2, s. 141-154
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Tidskriftsartikel (refereegranskat)abstract
- Few studies have tried to analyse the phylogenetic information contained in frog mating calls. While some of those studies suggest that sexual selection deletes any phylogenetic signal, others indicate that frog calls do retain phylogenetic informative characters. Discordant results can be the outcome of disparate rates of character evolution and evolutionary plasticity of call characters in different groups of frogs, but also the result of applying different coding methods. No study to date has compared the relative performance of different coding methods in detecting phylogenetic signal in calls, hampering thus potential consilience between previous results. In this study, we analyse the strength of phylogenetic signal in 10 mating call characters of 11 related species of frogs belonging to three genera of Andean and Amazonian frogs (Anura: Terrarana: Strabomantidae). We use six quantitative characters (number of notes per call, note length, call length, number of pulses per note, fundamental frequency and dominant frequency) and four qualitative ones (presence/absence of: pseudopulses, frequency modulation in notes, amplitude modulation in notes and amplitude modulation in pulses). We code quantitative characters using four different coding and scaling methods: (i) gap-coding, (ii) fixed-scale, (iii) step-matrix gap-weighting with between-characters scaling, and (iv) step-matrix gap-weighting with between-states scaling. All four coding methods indicate that frog calls contain phylogenetic information. These results suggest that divergent selection on frog mating calls may not always be strong enough to eliminate phylogenetic signal. However, coding methods strongly affect the amount of recoverable information. Step-matrix gap-weighting with between-characters scaling and gap-coding are suggested as the best methods available for coding quantitative characters of frog calls. Also, our results indicate that the arbitrariness in selecting character states and the method for scaling transitions weights, rather than the number of character states, is what potentially biases phylogenetic analyses with quantitative characters.
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| 7. |
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| 8. |
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| 9. |
- Klinth, Mårten, 1990, et al.
(författare)
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Phylogeny and species delimitation of North European Lumbricillus (Clitellata, Enchytraeidae)
- 2017
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Ingår i: Zoologica Scripta. - : Wiley. - 0300-3256. ; 46:1, s. 96-110
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Tidskriftsartikel (refereegranskat)abstract
- The enchytraeid genus Lumbricillus comprises about 80 described species of clitellate worms, which are up to a few centimetres long, and they mostly inhabit the littoral zone of nontropical marine and brackish waters world-wide. The phylogeny of this genus is poorly studied, but previous work has suggested that Lumbricillus is a non-monophyletic group. In this study, species boundaries and the phylogeny of this genus is re-assessed using more than 300 DNA-barcoded specimens (using COI mtDNA), part of which was also sequenced for two additional mitochondrial and four nuclear molecular markers. Statistical and coalescent based applications were used for the delimitation of a total of 24 species, of which 20 were identified as belonging to 17 described morphospecies; one morphospecies was found to be a complex of four delimited species, and another four delimited species could not be matched with any described species. Furthermore, gene trees, concatenation and multispecies coalescent based species trees were estimated using Bayesian inference. The estimated phylogenies confirm a non-monophyletic Lumbricillus as L. semifuscus is clearly excluded from the genus. Furthermore, the placement of a monophyletic clade consisting of L. arenarius, L. dubius, and an unidentified species varies between analyses; they are either found as the sister-group to the genus Grania or as sister-group to the remaining Lumbricillus, where the latter relationship is supported by the multispecies coalescent, which we consider as the most reliable method.
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| 10. |
- Koehler, Joern, et al.
(författare)
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Systematics of Andean gladiator frogs of the Hypsiboas pulchellus species group (Anura, Hylidae)
- 2010
-
Ingår i: Zoologica Scripta. - : Wiley. - 0300-3256 .- 1463-6409. ; 39:6, s. 572-590
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Tidskriftsartikel (refereegranskat)abstract
- We revisit the taxonomic status of Andean species and populations of frogs of the Hypsiboas pulchellus group using multiple lines of evidence potentially indicative of evolutionary lineage divergence in anurans: differences in qualitative morphological or bioacoustic character states, no overlap in quantitative characters of advertisement calls, and monophyly of gene genealogies. We found qualitative and quantitative morphological characters to be extremely variable among species and populations of the group and thus of very limited use in assessing lineage divergence. In contrast, phylogenetic analyses based on 16S rRNA and cytochrome b sequences resolved highly supported clades that are in concordance with bioacoustic differences. The results support the specific distinctness of most nominal species recognized in the group, including the Bolivian Hypsiboas balzani and Hypsiboas callipleura, two species that were considered to be synonymous, and revealed the presence of an undescribed species from southern Peru, which is here described as Hypsiboas gladiator sp. n. In contrast, Hypsiboas andinus and Hypsiboas riojanus were mutually paraphyletic, and showed no differences in morphology and acoustic characters. Consequently, we regard the former as a junior synonym of the latter. However, we discovered that populations of H. riojanus from central Bolivia exhibit some degree of genetic differentiation and advertisement call differences with respect to Argentine populations, but sampling of these Bolivian populations is too sparse to draw taxonomic conclusions. Our phylogenetic results support the hypothesis that ancestral lineages of the Andean H. pulchellus group experienced successive splitting events along a latitudinal gradient from north to south.
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| 11. |
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| 12. |
- Kånneby, Tobias, 1981-, et al.
(författare)
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Phylogeny of Chaetonotidae and other Paucitubulatina (Gastrotricha: Chaetonotida) and the colonization of aquatic ecosystems
- 2013
-
Ingår i: Zoologica Scripta. - : Wiley. - 0300-3256 .- 1463-6409. ; 42:1, s. 88-105
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Tidskriftsartikel (refereegranskat)abstract
- Chaetonotidae is the largest family within Gastrotricha with almost 400 nominal species represented in both freshwater and marine habitats. The group is probably non-monophyletic and suffers from a troubled taxonomy. Current classification is to a great extent based on shape and distribution of cuticular structures, characters that are highly variable. We present the most densely sampled molecular study so far where 17 of the 31 genera belonging to Chaetonotida are represented. Bayesian and maximum likelihood approaches based on 18S rDNA, 28S rDNA and COI mtDNA are used to reconstruct relationships within Chaetonotidae. The use of cuticular structures for supra-specific classification within the group is evaluated and the question of dispersal between marine and freshwater habitats is addressed. Moreover, the subgeneric classification of Chaetonotus is tested in a phylogenetic context. Our results show high support for a clade containing Dasydytidae nested within Chaetonotidae. Within this clade, only three genera are monophyletic following current classification. Genera containing both marine and freshwater species never form monophyletic clades and group with other species according to habitat. Marine members of Aspidiophorus appear to be the sister group of all other Chaetonotidae and Dasydytidae, indicating a marine origin of the clade. Halichaetonotus and marine Heterolepidoderma form a monophyletic group in a sister group relationship to freshwater species, pointing towards a secondary invasion of marine environments of these taxa. Our study highlights the problems of current classification based on cuticular structures, characters that show homoplasy for deeper relationships.
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| 13. |
- Liao, Te-Yu, et al.
(författare)
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Phylogenetic analysis of the genus Rasbora (Teleostei: Cyprinidae)
- 2010
-
Ingår i: Zoologica Scripta. - : Wiley. - 0300-3256 .- 1463-6409. ; 39:2, s. 155-176
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Tidskriftsartikel (refereegranskat)abstract
- A phylogenetic analysis was conducted based on 35 cyprinid taxa, including 29 species of Rasbora, and 41 morphological characters. A strict consensus tree from four equally parsimonious trees recovered rasborins as a monophyletic group characterized by (i) presence of dark supra-anal pigment and subpeduncular streak, (ii) 5–6 branched anal-fin rays, (iii) dorsal-fin insertion 1–3 scales behind pelvic-fin insertion, (iv) lateral process of second vertebra more or less straight, (v) 1–5 more abdominal than caudal vertebrae, (vi) absence of foramen in anterior wall of horizontal limb of the cleithrum, (vii) presence of rasborin process on epibranchial 4, and (viii) interhyal well ossified. Rasbora sensu stricto can be distinguished from all other rasborin genera by the presence of an opercular canal. Four new genera, viz. Brevibora, n. gen., Kottelatia, n, gen., Rasbosoma, n. gen. and Trigonopoma, n. gen., are recognized and described.
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| 14. |
- Martin, P., et al.
(författare)
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Integrative species delimitation and phylogeny of the branchiate worm Branchiodrilus (Clitellata, Naididae)
- 2018
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Ingår i: Zoologica Scripta. - : Wiley. - 0300-3256. ; 47:6, s. 727-742
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Tidskriftsartikel (refereegranskat)abstract
- The clitellate branchiate genus Branchiodrilus presently includes three nominal species with a mainly tropical distribution. A recent molecular phylogeny of the subfamily Naidinae suggested that species complexes may occur within the genus. In order to delimit species, we studied a total of 91 Branchiodrilus specimens collected in Asia, Africa and Europe; the genus is introduced in the latter area. We used an integrative approach, where genetic data were analysed for 42 specimens (single-locus and multiple-locus methods) and then compared with patterns shown by morphology. Ten Molecular Operational Taxonomic Units could be identified within Branchiodrilus, potentially representing 10 different species. Most of the delimited species are genetically well separated. In contrast, morphological scrutiny identified only three non-overlapping clusters of specimens, one of them grouping all specimens from the Palaearctic region and belonging to the same species. Other morphological groups are mostly consistent with the biogeographic distribution of species. The Oriental region harbours six species and might be the centre of origin from which Branchiodrilus species have dispersed and radiated. Two other species are present in the Afrotropical region, among them B.cleistochaeta newly obtained from the type locality and genetically characterized, but the presence of B.hortensis in Africa is queried. The taxonomic relevance of the morphological criteria traditionally used to distinguish nominal species is useless at the species level. B.hortensis and B.semperi are now considered as species inquirenda. To document the genital organs of species remains highly desirable, although hardly practicable for this species complex with a primarily asexual reproductive mode.
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| 15. |
- Martinsson, Svante, 1985, et al.
(författare)
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Integrative taxonomy of the freshwater worm Rhyacodrilus falciformis s.l. (Clitellata: Naididae), with the description of a new species
- 2013
-
Ingår i: Zoologica Scripta. - : Wiley. - 0300-3256. ; 42:6, s. 612-622
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Tidskriftsartikel (refereegranskat)abstract
- The genetic and morphological variation within Rhyacodrilus falciformis Bretscher, 1901 (Clitellata: Naididae) in Europe was explored using an integrative approach, with three unlinked genetic markers [the mitochondrial cytochrome c oxidase subunit I (COI), the nuclear histone 3 (H3) and internal transcribed spacer region (ITS)] combined with morphology, to investigate whether this taxon constitutes a single or several species. Using Automatic Barcode Gap Discovery on the COI data set, the specimens were divided into seven clusters, used as hypothetical species that were further tested with the other data sources. Single-gene trees were estimated for all three markers, using coalescence analysis and they were in many parts incongruent with each other. Only one of the clusters was supported by all trees; it was also morphologically differentiated from the other clusters by the shape of its modified penial chaetae. This group consists of two specimens from the Crotot Cave in south-eastern France, and morphologically they fit a previously described but invalid variety, ‘pigueti’, which is here described as a new species, Rhyacodrilus pigueti Achurra & Martinsson sp. n. The study highlights the fact that a single data source (e.g. COI barcodes) seldom provides a sufficient basis for taxonomic decisions such as species delimitation.
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| 16. |
- Martinsson, Svante, 1985, et al.
(författare)
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Towards a molecular phylogeny of the fungus gnat genus Boletina (Diptera: Mycetophilidae)
- 2011
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Ingår i: Zoologica Scripta. - : Wiley. - 0300-3256. ; 40:3, s. 272-281
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Tidskriftsartikel (refereegranskat)abstract
- Boletina is a species rich genus of fungus gnats (Diptera: Mycetophilidae) with a mainly Holarctic distribution. The systematics within the genus has gained little attention and this is a first attempt to shed some light over the systematics of Boletina and to test the segregation of the genera Saigusaia and Aglaomyia from Boletina. The nuclear marker 28S and mitochondrial 16S, COI and CytB were amplified and sequenced for 23 taxa that were analysed separately and together with a broad sample of outgroup taxa obtained from GenBank, where also 18S sequences were added. Phylogenies were estimated using maximum likelihood, Bayesian inference and parsimony. We strengthen the hypothesized sister-group relationship between Docosia and Boletina, but the genus Boletina as currently delimited appears to be paraphyletic and nested in a clade together with Aglaomyia, Coelosia and Gnoriste. The genus Saigusaia, on the other hand, seems to be well separated from Boletina. The Boletina erythropyga species group is consistently found as a distinct basal clade within Boletina s.l. The results obtained are otherwise ambiguous both for the taxa in focus and in some analyses globally with a statistically supported total breakdown of the traditional higher classification into tribes, subfamilies and even families. Interestingly, this breakdown almost disappeared when additional 18S sequences were added.
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| 17. |
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| 18. |
- Nygren, Arne, 1971
(författare)
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Cryptic polychaete diversity: A review
- 2014
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Ingår i: Zoologica Scripta. - : Wiley. - 0300-3256. ; 43:2, s. 172-183
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Tidskriftsartikel (refereegranskat)abstract
- This review summarises the current knowledge on cryptic species of polychaetes, one of the most dominant taxa in marine communities, and gives a brief overview of the different methods that has been used for their disclosure. Cryptic species constitute an important part of biodiversity and they are common among all kinds of polychaetes, with different life history traits, and may have sympatric as well as allopatric distributions. It is emphasised that cryptic species must not be neglected for a variety of reasons, and even though the magnitude of cryptic species is largely unknown the available data on polychaetes clearly demonstrate that morphology alone seriously underestimate the number of species. It is suggested that future research should focus on appropriately designed case-studies using combined approaches, as well as on large-scale whole sample analyses using next-generation sequencing in order to be able to answer the many questions that still remains. © 2013 The Norwegian Academy of Science and Letters.
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| 19. |
- Panova, Marina, 1973, et al.
(författare)
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A molecular phylogeny of the north-east Atlantic species of the genus Idotea (Isopoda) with focus on the Baltic Sea
- 2017
-
Ingår i: Zoologica Scripta. - : Wiley. - 0300-3256 .- 1463-6409. ; 46:2, s. 188-199
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Tidskriftsartikel (refereegranskat)abstract
- Today, the marine isopods of the genus Idotea Fabricius, 1798 consist of 26 accepted species. Most species can be found in the Northern Hemisphere. While some species have a cosmopolitan distribution, others are endemic to a few coastlines. In the Baltic Sea, Idotea species have a key role as important meso-grazers. Only three species can be found in this brackish environment, I. balthica, I. chelipes and I. granulosa, while nine species are described from the whole European coast. The goal of the present study was to reconstruct the phylogeny of the genus Idotea and to test whether the Baltic low-salinity tolerant species represent a single lineage within the genus. The phylogeny of north-east Atlantic Idotea species was investigated based on a fragment of the nuclear gene 28S and the mitochondrial gene COI for eight Idotea species. The phylogenetic reconstructions showed that the genus Idotea might not be monophyletic. Neither I. linearis nor I. urotoma did belong to the separated and well-supported Idotea clade of I. balthica, I. chelipes, I. emarginata, I. granulosa, I. metallica and I. pelagica. The three Idotea species found in the Baltic belonged to different lineages, with estimated COI-based divergence time older than 7 Myr. This suggests that the tolerance to low salinity has likely evolved in the genus Idotea more than once.
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| 20. |
- Peña, Carlos, et al.
(författare)
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Biogeographic history of the subtribe Euptychiina (Lepidoptera, Nymphalidae, Satyrinae)
- 2010
-
Ingår i: Zoologica Scripta. - : Wiley. - 0300-3256 .- 1463-6409. ; 39, s. 243-258
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Tidskriftsartikel (refereegranskat)abstract
- The diverse butterfly subtribe Euptychiina was thought to be restricted to the Americas. However, there is mounting evidence for the Oriental Palaeonympha opalina being part of Euptychiina and thus a disjunct distribution between it (in eastern Asia) and its sister taxon (in eastern North America). Such a disjunct distribution in both eastern Asia and eastern North America has never been reported for any butterfly taxon. We used 4447 bp of DNA sequences from one mitochondrial gene and four nuclear genes for 102 Euptychiina taxa to obtain a phylogenetic hypothesis of the subtribe, estimate dates of origin and diversifica- tion for major clades and perform a biogeographic analysis. Euptychiina originated 31 Ma in South America. Early Euptychiina dispersed from North to South America via the tem- porary connection known as GAARlandia during Eocene–Oligocene times. The current disjunct distribution of the Oriental Palaeonympha opalina is the result of a northbound dis- persal of a lineage from South America into eastern Asia via North America. The common ancestor of Palaeonympha and its sister taxon Megisto inhabited the continuous forest belt across North Asia and North America, which was connected by Beringia. The closure of this connection caused the split between Palaeonympha and Megisto around 13 Ma and the severe extinctions in western North America because of the climatic changes of the Late Miocene (from 13.5 Ma onwards) resulted in the classic ‘eastern Asia and eastern North America’ disjunct distribution.
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| 21. |
- Ravara, A., et al.
(författare)
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Phylogenetic relationships within Nephtyidae (Polychaeta, Annelida)
- 2010
-
Ingår i: Zoologica Scripta. - : Wiley. - 0300-3256 .- 1463-6409. ; 39:4, s. 394-405
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Tidskriftsartikel (refereegranskat)abstract
- We present the first phylogeny of nephtyids, a common, soft-bottom living polychaete family comprising five genera and over 100 species. Characters used to distinguish nephtyid genera are a matter of controversy and considerable confusion remains as to the generic delineations. The phylogeny is estimated with molecular data from the mitochondrial genes cytochrome oxidase I and 16S rDNA, the nuclear genes 18S rDNA and 28S rDNA and morphological data. The results reveal two well-supported major clades, corresponding in part to the two main genera of the family, Aglaophamus and Nephtys. The species Nephtys pulchra and Nephtys australiensis are transferred to Aglaophamus, and new diagnoses for the genera are provided. Dentinephtys is synonymized with Nephtys, and Nephtys cornuta is sister to the remaining nephtyids and is referred to the new genus Bipalponephtys, together with Nephtys danida and Micronephthys neotena. Micronephthys is sister to Nephtys and Inermonephtys is of uncertain position.
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| 22. |
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| 23. |
- Strand, Malin, et al.
(författare)
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Size of genera - biology or taxonomy?
- 2015
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Ingår i: Zoologica Scripta. - : Wiley. - 0300-3256 .- 1463-6409. ; 44, s. 106-116
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Annan publikation (refereegranskat)
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| 24. |
- Suh, Alexander
(författare)
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The phylogenomic forest of bird trees contains a hard polytomy at the root of Neoaves
- 2016
-
Ingår i: Zoologica Scripta. - : Wiley. - 0300-3256 .- 1463-6409. ; 45, s. 50-62
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Forskningsöversikt (refereegranskat)abstract
- Birds have arguably been the most intensely studied animal group for their phylogenetic relationships. However, the recent advent of genome-scale phylogenomics has made the forest of bird phylogenies even more complex and confusing. Here, in this perspective piece, I show that most parts of the avian Tree of Life are now firmly established as reproducible phylogenetic hypotheses. This is to the exception of the deepest relationships among Neoaves. Using phylogenetic networks and simulations, I argue that the very onset of the super-rapid neoavian radiation is irresolvable because of eight near-simultaneous speciation events. Such a hard polytomy of nine taxa translates into 2 027 025 possible rooted bifurcating trees. Accordingly, recent genome-scale phylogenies show extremely complex conflicts in this (and only this) part of the avian Tree of Life. I predict that the upcoming years of avian phylogenomics will witness many more, highly conflicting tree topologies regarding the early neoavian polytomy. I further caution against bootstrapping in the era of genomics and suggest to instead use reproducibility (e.g. independent methods or data types) as support for phylogenetic hypotheses. The early neoavian polytomy coincides with the Cretaceous-Paleogene (K-Pg) mass extinction and is, to my knowledge, the first empirical example of a hard polytomy.
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| 25. |
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| 26. |
- Vujic, Ante, et al.
(författare)
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Systematics of Pipizini and taxonomy of European Pipiza Fallen: molecular and morphological evidence (Diptera, Syrphidae)
- 2013
-
Ingår i: Zoologica Scripta. - : Wiley. - 0300-3256. ; 42:3, s. 288-305
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Tidskriftsartikel (refereegranskat)abstract
- Vuji, A., Stahls, G., Aanski, J., Bartsch, H., Bygebjerg, R. & Stefanovi, A. (2013). Systematics of Pipizini and taxonomy of European Pipiza Fallen: molecular and morphological evidence (Diptera, Syrphidae). Zoologica Scripta, 42, 288305. In the present work the monophyly and molecular phylogenetic relationships of the genera of tribe Pipizini (Syrphidae) were investigated based on mitochondrial cytochrome c oxidase subunit I (COI) and nuclear 28S rDNA sequences, and the relationships among species of genus Pipiza Fallen, 1810 based on mtDNA COI sequences. Molecular phylogenetic analyses of Pipizini supported Pipiza as monophyletic and as sister group to all other Pipizini, and resolved other Pipizini genera as monophyletic lineages except for genus Heringia Rondani, 1856. To recognize the distinctness and maintain the monophyly the genus Heringia was redefined, generic rank was assigned to Neocnemodon Goffe, 1944 stat. n., and the genus Claussenia Vuji & Stahls gen. n., type-species Claussenia hispanica (Strobl, 1909), was described. A revision of the European Pipiza species, including a discussion of taxonomic characters and a morphological redefinition of all included species, is presented. One new species, Pipiza laurusi Vuji & Stahls sp. n. was described. The taxa Pipiza carbonaria Meigen, 1822; Pipiza fasciata, Meigen 1822; Pipiza lugubris (Fabricius, 1775), Pipiza noctiluca (Linneaues, 1758), Pipiza notata Meigen, 1822 were redefined. Lectotypes are designated for 17 taxa, and neotypes were designated for seven taxa. Fourteen new synonymies were proposed. Male genitalia were illustrated for all the species, and a key of the 12 European species for males and females was provided. Geometric morphometrics of wing landmarks and extended sampling of mtDNA COI sequences was employed to delimitate taxa of the P.noctiluca and P.lugubris complexes. Despite subtle morphological differences, wing geometric morphometrics variables of wing size and shape showed highly significant differences among species within P.noctiluca and P.lugubris complexes, which were supported by the molecular data.
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| 27. |
- Wahlberg, Niklas, et al.
(författare)
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Revised systematics and higher classification of pierid butterflies (Lepidoptera : Pieridae) based on molecular data
- 2014
-
Ingår i: Zoologica Scripta. - : Wiley. - 0300-3256 .- 1463-6409. ; 43:6, s. 641-650
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Tidskriftsartikel (refereegranskat)abstract
- The butterfly family Pieridae comprises approximately 1000 described species placed in 85 genera, but the higher classification has not yet been settled. We used molecular data from eight gene regions (one mitochondrial and seven nuclear protein-coding genes) comprising a total of similar to 6700bp from 96 taxa to infer a well-supported phylogenetic hypothesis for the family. Based on this hypothesis, we revise the higher classification for all pierid genera. We resurrect the tribe Teracolini stat. rev. in the subfamily Pierinae to include the genera Teracolus, Pinacopteryx, Gideona, Ixias, Eronia, Colotis and most likely Calopieris. We transfer Hebomoia to the tribe Anthocharidini and assign the previously unplaced genera Belenois and Dixeia to the subtribe Aporiina. Three lineages near the base of Pierinae (Leptosia, Elodina and Nepheronia + Pareronia) remain unplaced. For each of these, we describe and delineate new tribes: Elodinini Braby tribus nova, Leptosiaini Braby tribus nova and Nepheroniini Braby tribus nova. The proposed higher classification is based on well-supported monophyletic groups and is likely to remain stable even with the addition of more data.
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| 28. |
- Zenker, Mauricio M., et al.
(författare)
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Systematics and origin of moths in the subfamily Arctiinae (Lepidoptera, Erebidae) in the Neotropical region
- 2017
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Ingår i: Zoologica Scripta. - : Wiley. - 0300-3256 .- 1463-6409. ; 46:3, s. 348-362
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Tidskriftsartikel (refereegranskat)abstract
- The availability of standard protocols to obtain DNA sequences has allowed the inference of phylogenetic Hypotheses for many taxa, including moths. We here have inferred a phylogeny using maximum-Likelihood and Bayesian approaches for a species-rich group of moths (Erebidae, Arctiinae), with strong emphasis on Neotropical genera collected in different field campaigns in the Atlantic Forest of Brazil, eastern Amazon and southern Ecuador. A total of 277 species belonging to 246 genera were included in the analysis. Our main objectives were to shed light on the relationships between suprageneric groups, especially subtribes, and hypothesize colonization events in and out of the Neotropics. The monophyly of Arctiinae and its four tribes (Lithosiini, Amerilini, Syntomini and Arctiini) was recovered in the ML and Bayesian trees. Three Lithosiini subtribes previously found and two additional species groups were recovered monophyletic in both phylogenetic estimation methods. In Arctiini, the monophyly of Spilosomina and Arctiina was highly supported in the ML and Bayesian trees, but the monophyly of Ctenuchina and Echromiina was weakly supported in the ML tree and absent in the Bayesian tree; the remaining subtribes were paraphyletic and, in the case of Phageopterina, formed several species groups. The mapping of species occurrence in our ML tree suggests that Arctiinae have an Old World origin and that the Neotropical region was colonized at least six times independently. Our analysis also suggests that a number of species that occur in Neotropical and other zoogeographic regions may have originated in the Neotropics, although further taxon sampling is required to support this hypothesis. To our knowledge, this is the first time that a highly speciose group of tropical moths is well covered in a phylogeny, and it seems plausible that the results reported here may be extendable to other species-rich tropical undersampled moth taxa.
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| 29. |
- Zhou, Hong, et al.
(författare)
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Molecular phylogeny of Nearctic species of Rhynchelmis (Annelida)
- 2010
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Ingår i: Zoologica Scripta. - : Wiley. - 0300-3256 .- 1463-6409. ; 39, s. 378-393
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Tidskriftsartikel (refereegranskat)abstract
- The Nearctic species of Rhynchelmis (Clitellata, Lumbriculidae) are known primarily from cool-water habitats in western North America. Their taxonomy has so far been based on limited collections from isolated localities, using intuitive assessment of morphological characters. This approach has proved unsatisfactory when additional populations of closely related species were sampled and scrutinized for incorporation in the present classification. Therefore, in this study, mitochondrial (cytochrome c oxidase subunit I and 16S rDNA) and nuclear internal transcriber spacer (ITS rDNA) genes were analysed as phylogenetic markers of Nearctic Rhynchelmis species. A combined approach with all the three gene regions provided a better resolution than any of the individual genes by itself. The genes demonstrated monophyly of all major groupings proposed on the morphological basis. Within the Rhynchelmis yakimorum complex, however, the genetic data and distribution suggested that two clades initially referred to as a ‘R. yakimorum variant 1’, one from the lower Snake River drainage in Idaho and one from southern coastal Oregon, might represent two separate species. On the other hand, the sympatric distribution and low genetic distance between Rhynchelmis gustafsoni and a form tentatively identified as ‘R. cf. yakimorum’ (both collected in eastern Idaho) indicated conspecific status. This study also showed that the cytochrome c oxidase subunit I (COI) gene, which may be informative of recent and on-going speciation and useful for species discrimination (as a DNA barcode), is less suitable as a single molecular marker for phylogenetic inference. Regardless of whether one deals with very closely related species (such as those of the yakimorum complex), with taxa with a wide and disjunct distribution (such as Rhynchelmis rostrata), or with more distantly related species, COI data should be supplemented by other genetic markers as well as morphological and biogeographical information.
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| 30. |
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