| 1. |
- Bedoni, Nicola, et al.
(författare)
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Mutations in the polyglutamylase gene TTLL5, expressed in photoreceptor cells and spermatozoa, are associated with cone-rod degeneration and reduced male fertility
- 2016
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Ingår i: Human Molecular Genetics. - 0964-6906. ; 25:20, s. 4546-4555
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Tidskriftsartikel (refereegranskat)abstract
- Hereditary retinal degenerations encompass a group of genetic diseases characterized by extreme clinical variability. Following next-generation sequencing and autozygome-based screening of patients presenting with a peculiar, recessive form of cone-dominated retinopathy, we identified five homozygous variants [p.(Asp594fs), p.(Gln117*), p.(Met712fs), p.(Ile756Phe), and p.(Glu543Lys)] in the polyglutamylase-encoding gene TTLL5, in eight patients from six families. The two male patients carrying truncating TTLL5 variants also displayed a substantial reduction in sperm motility and infertility, whereas those carrying missense changes were fertile. Defects in this polyglutamylase in humans have recently been associated with cone photoreceptor dystrophy, while mouse models carrying truncating mutations in the same gene also display reduced fertility in male animals. We examined the expression levels of TTLL5 in various human tissues and determined that this gene has multiple viable isoforms, being highly expressed in testis and retina. In addition, antibodies against TTLL5 stained the basal body of photoreceptor cells in rat and the centrosome of the spermatozoon flagellum in humans, suggesting a common mechanism of action in these two cell types. Taken together, our data indicate that mutations in TTLL5 delineate a novel, allele-specific syndrome causing defects in two as yet pathogenically unrelated functions, reproduction and vision.
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| 2. |
- Zanello, Marc, et al.
(författare)
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Predictors of Epileptic Seizures and Ability to Work in Supratentorial Cavernous Angioma Located Within Eloquent Brain Areas
- 2019
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Ingår i: Neurosurgery. - : Ovid Technologies (Wolters Kluwer Health). - 0148-396X .- 1524-4040. ; 85:4, s. E702-E713
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Tidskriftsartikel (refereegranskat)abstract
- BACKGROUND: The postoperative outcomes and the predictors of seizure control are poorly studied for supratentorial cavernous angiomas (CA) within or close to the eloquent brain area.OBJECTIVE: To assess the predictors of preoperative seizure control, postoperative seizure control, and postoperative ability to work, and the safety of the surgery.METHODS: Multicenter international retrospective cohort analysis of adult patients benefitting from a functional-based surgical resection with intraoperative functional brain mapping for a supratentorial CA within or close to eloquent brain areas.RESULTS: A total of 109 patients (66.1% women; mean age 38.4 ± 12.5 yr), were studied. Age >38 yr (odds ratio [OR], 7.33; 95% confidence interval [CI], 1.53-35.19; P = .013) and time to surgery > 12 mo (OR, 18.21; 95% CI, 1.11-296.55; P = .042) are independent predictors of uncontrolled seizures at the time of surgery. Focal deficit (OR, 10.25; 95% CI, 3.16-33.28; P < .001) is an independent predictor of inability to work at the time of surgery. History of epileptic seizures at the time of surgery (OR, 7.61; 95% CI, 1.67-85.42; P = .003) and partial resection of the CA and/or of the hemosiderin rim (OR, 12.02; 95% CI, 3.01-48.13; P < .001) are independent predictors of uncontrolled seizures postoperatively. Inability to work at the time of surgery (OR, 19.54; 95% CI, 1.90-425.48; P = .050), Karnofsky Performance Status ≤ 70 (OR, 51.20; 95% CI, 1.20-2175.37; P = .039), uncontrolled seizures postoperatively (OR, 105.33; 95% CI, 4.32-2566.27; P = .004), and worsening of cognitive functions postoperatively (OR, 13.71; 95% CI, 1.06-176.66; P = .045) are independent predictors of inability to work postoperatively.CONCLUSION: The functional-based resection using intraoperative functional brain mapping allows safe resection of CA and the peripheral hemosiderin rim located within or close to eloquent brain areas.
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| 3. |
- Bonny, G., et al.
(författare)
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Density functional theory-based cluster expansion to simulate thermal annealing in FeCrW alloys
- 2017
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Ingår i: Philosophical Magazine. - : Taylor & Francis. - 1478-6435 .- 1478-6443. ; 97:5, s. 299-317
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Tidskriftsartikel (refereegranskat)abstract
- In this work, we develop a rigid lattice cluster expansion as an ultimate goal to track the micro-structural evolution of Eurofer steel under neutron irradiation. The fact that all (defect) structures are mapped upon a rigid lattice allows a simplified computation and fitting procedure, thus enabling alloys of large chemical complexity to be modelled. As a first step towards the chemical complexity of Eurofer steels, we develop a cluster expansion (CE) for the FeCrW-vacancy system based on density functional theory (DFT) calculations in the dilute alloy limit. The DFT calculations suggest that only CrW clusters containing vacancies are stabilised. The cluster expansion was used to simulate thermal annealing in Fe–20Cr–xW alloys at 773 K. It is found that the addition of W to the alloy results in a non-linear decrease in the precipitation kinetics. The CE was found suitable to describe the energetics of the FeCrW-vacancy system in the Fe-rich limit.
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| 4. |
- Bonny, G., et al.
(författare)
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Interatomic potential to study the formation of NiCr clusters in high Cr ferritic steels
- 2017
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Ingår i: Journal of Nuclear Materials. - : Elsevier. - 0022-3115 .- 1873-4820. ; 484, s. 42-50
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Tidskriftsartikel (refereegranskat)abstract
- Under irradiation NiSiPCr clusters are formed in high-Cr ferritic martensitic steels as well as in FeCr model alloys. In the literature little is known about the origin and contribution to the hardening of these clusters. In this work we performed density functional theory (DFT) calculations to study the stability of small substitutional NiCr-vacancy clusters and interstitial configurations in bcc Fe. Based on DFT data and experimental considerations a ternary potential for the ferritic FeNiCr system was developed. The potential was applied to study the thermodynamic stability of NiCr clusters by means of Metropolis Monte Carlo (MMC) simulations. The results of our simulations show that Cr and Ni precipitate as separate fractions and suggest only a limited synergetic effect between Ni and Cr. Therefore our results suggest that the NiCrSiP clusters observed in experiments must be the result of other mechanisms than the synergy of Cr and Ni at thermal equilibrium.
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| 5. |
- Bonny, G., et al.
(författare)
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The impact of alloying elements on the precipitation stability and kinetics in iron based alloys : An atomistic study
- 2019
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Ingår i: Computational materials science. - : Elsevier. - 0927-0256 .- 1879-0801. ; 161, s. 309-320
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Tidskriftsartikel (refereegranskat)abstract
- Iron based industrial steels typically contain a large number of alloying elements, even so-called low alloyed steels. Under irradiation, these alloying elements form clusters that have a detrimental impact of the mechanical properties of the steel. The stability and formation mechanisms of such clusters are presently not fully understood. Therefore, in this work, we study the thermal stability and formation kinetics of small solute clusters in the bcc Fe matrix. We use density functional theory (DFT) to characterize the binding energy of vacancy/solute clusters containing Cr, Mn, Ni, Cu, Si and P, thereby exploring >700 different configurations. The constructed DFT data base is used to fit a cluster expansion (CE) for the vacancy-FeCrMnNiCuSiP system. In turn, the obtained CE is applied in atomistic kinetic Monte Carlo simulations to study the effect of Mn, Ni, Cr, Si and P on the precipitation formation in the FeCu alloy. We conclude that the addition of Mn and Ni delay the precipitation kinetics by an order of magnitude. The additional alloying with traces of P/Si further delays the kinetics by an additional order of magnitude. We found that Si plays an essential role in the formation of spatially mixed MnNiCuSi cluster
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| 8. |
- Sublet, J. -Ch., et al.
(författare)
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Neutron-induced damage simulations : Beyond defect production cross-section, displacement per atom and iron-based metrics
- 2019
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Ingår i: The European Physical Journal Plus. - : Springer Berlin/Heidelberg. - 2190-5444. ; 134:7
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Forskningsöversikt (refereegranskat)abstract
- Nuclear interactions can be the source of atomic displacement and post-short-term cascade annealing defects in irradiated structural materials. Such quantities are derived from, or can be correlated to, nuclear kinematic simulations of primary atomic energy distributions spectra and the quantification of the numbers of secondary defects produced per primary as a function of the available recoils, residual and emitted, energies. Recoils kinematics of neutral, residual, charged and multi-particle emissions are now more rigorously treated based on modern, complete and enhanced nuclear data parsed in state of the art processing tools. Defect production metrics are the starting point in this complex problem of correlating and simulating the behaviour of materials under irradiation, as direct measurements are extremely improbable. The multi-scale dimensions (nuclear-atomic-molecular-material) of the simulation process is tackled from the Fermi gradation to provide the atomic- and meso-scale dimensions with better metrics relying upon a deeper understanding and modelling capabilities of the nuclear level. Detailed, segregated primary knock-on-atom metrics are now available as the starting point of further simulation processes of isolated and clustered defects in material lattices. This allows more materials, incident energy ranges and particles, and irradiations conditions to be explored, with sufficient data to adequately cover both standard applications and novel ones, such as advanced-fission, accelerators, nuclear medicine, space and fusion. This paper reviews the theory, describes the latest methodologies and metrics, and provides recommendations for standard and novel approaches.
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