| 1. |
- Beal, Jacob, et al.
(author)
-
Robust estimation of bacterial cell count from optical density
- 2020
-
In: Communications Biology. - : Springer Science and Business Media LLC. - 2399-3642. ; 3:1
-
Journal article (peer-reviewed)abstract
- Optical density (OD) is widely used to estimate the density of cells in liquid culture, but cannot be compared between instruments without a standardized calibration protocol and is challenging to relate to actual cell count. We address this with an interlaboratory study comparing three simple, low-cost, and highly accessible OD calibration protocols across 244 laboratories, applied to eight strains of constitutive GFP-expressing E. coli. Based on our results, we recommend calibrating OD to estimated cell count using serial dilution of silica microspheres, which produces highly precise calibration (95.5% of residuals <1.2-fold), is easily assessed for quality control, also assesses instrument effective linear range, and can be combined with fluorescence calibration to obtain units of Molecules of Equivalent Fluorescein (MEFL) per cell, allowing direct comparison and data fusion with flow cytometry measurements: in our study, fluorescence per cell measurements showed only a 1.07-fold mean difference between plate reader and flow cytometry data.
|
|
| 2. |
|
|
| 3. |
- Campbell, PJ, et al.
(author)
-
Pan-cancer analysis of whole genomes
- 2020
-
In: Nature. - : Springer Science and Business Media LLC. - 1476-4687 .- 0028-0836. ; 578:7793, s. 82-
-
Journal article (peer-reviewed)abstract
- Cancer is driven by genetic change, and the advent of massively parallel sequencing has enabled systematic documentation of this variation at the whole-genome scale1–3. Here we report the integrative analysis of 2,658 whole-cancer genomes and their matching normal tissues across 38 tumour types from the Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium of the International Cancer Genome Consortium (ICGC) and The Cancer Genome Atlas (TCGA). We describe the generation of the PCAWG resource, facilitated by international data sharing using compute clouds. On average, cancer genomes contained 4–5 driver mutations when combining coding and non-coding genomic elements; however, in around 5% of cases no drivers were identified, suggesting that cancer driver discovery is not yet complete. Chromothripsis, in which many clustered structural variants arise in a single catastrophic event, is frequently an early event in tumour evolution; in acral melanoma, for example, these events precede most somatic point mutations and affect several cancer-associated genes simultaneously. Cancers with abnormal telomere maintenance often originate from tissues with low replicative activity and show several mechanisms of preventing telomere attrition to critical levels. Common and rare germline variants affect patterns of somatic mutation, including point mutations, structural variants and somatic retrotransposition. A collection of papers from the PCAWG Consortium describes non-coding mutations that drive cancer beyond those in the TERT promoter4; identifies new signatures of mutational processes that cause base substitutions, small insertions and deletions and structural variation5,6; analyses timings and patterns of tumour evolution7; describes the diverse transcriptional consequences of somatic mutation on splicing, expression levels, fusion genes and promoter activity8,9; and evaluates a range of more-specialized features of cancer genomes8,10–18.
|
|
| 4. |
- Yi, Fan, et al.
(author)
-
Non-Fully Conjugated Dimerized Giant Acceptors with Different Alkyl-Linked Sites for Stable and 19.13 % Efficiency Organic Solar Cells
- 2024
-
In: Angewandte Chemie International Edition. - : WILEY-V C H VERLAG GMBH. - 1433-7851 .- 1521-3773.
-
Journal article (peer-reviewed)abstract
- Achieving both high power conversion efficiency (PCE) and device stability is a major challenge for the practical development of organic solar cells (OSCs). Herein, three non-fully conjugated dimerized giant acceptors (named 2Y-sites, including wing-site-linked 2Y-wing, core-site-linked 2Y-core, and end-site-linked 2Y-end) are developed. They share the similar monomer precursors but have different alkyl-linked sites, offering the fine-tuned molecular absorption, packing, glass transition temperature, and carrier mobility. Among their binary active layers, D18/2Y-wing has better miscibility, leading to optimized morphology and more efficient charge transfer compared to D18/2Y-core and D18/2Y-end. Therefore, the D18/2Y-wing-based OSCs achieve a superior PCE of 17.73 %, attributed to enhanced photocurrent and fill factor. Furthermore, the D18/2Y-wing-based OSCs exhibit a balance of high PCE and improved stability, distinguishing them within the 2Y-sites. Building on the success of 2Y-wing in binary systems, we extend its application to ternary OSCs by pairing it with the near-infrared absorbing D18/BS3TSe-4F host. Thanks to the complementary absorption within 300-970 nm and further optimized morphology, ternary OSCs obtain a higher PCE of 19.13 %, setting a new efficiency benchmark for the dimer-derived OSCs. This approach of alkyl-linked site engineering for constructing dimerized giant acceptors presents a promising pathway to improve both PCE and stability of OSCs. Three new non-fully conjugated dimerized giant acceptors with different alkyl-linked sites are developed. Among them, wing-sited 2Y-wing has fine-tuned packing and better miscibility with donor, allowing to 19.13 % efficiency (which is the highest value among the devices with giant acceptors) and highly stable organic solar cells. image
|
|
| 5. |
- Fan, Dong, et al.
(author)
-
Cardiovascular health profiles, systemic inflammation, and physical function in older adults : A population-based study
- 2023
-
In: Archives of gerontology and geriatrics (Print). - : Elsevier BV. - 0167-4943 .- 1872-6976. ; 109
-
Journal article (peer-reviewed)abstract
- We examined the association of modifiable cardiovascular health (CVH) metrics with physical function among rural older adults in China and the potential role of inflammatory mechanisms in the association. This study included 3733 stroke-and dementia-free participants (age >= 65 years; 56.9% women) in the baseline survey of a multimodal intervention study in rural China. From March-September 2018, data were collected via face-to-face interviews, clinical assessments, and laboratory tests. The Short Performance Physical Battery (SPPB) test was performed to assess physical function. We defined six modifiable CVH metrics according to the modified American Heart Association's recommendations. Serum interleukin (IL)-6 was measured in a subsample (n = 1156). Data were analyzed with multiple general linear and logistic regression models and structural equation modeling. Poor physical function (SPPB score <= 9) was defined in 1443 participants. Ideal CVH (vs. poor CVH) was associated with multivariable-adjusted odds ratio of 0.60 (95%CI 0.48-0.75) for poor physical function. Ideal CVH was significantly associated with higher scores on balance, chair stand, and walking speed tests (all p < 0.05). Moreover, ideal CVH profile was associated with lower serum IL-6 (multivariable-adjusted beta=-0.04; 95% CI-0.06,-0.01). Mediation analysis revealed that serum IL-6 accounted for 14% of the association of CVH with total SPPB score and 10% of the association with walking speed score (p < 0.05). This study suggests that an ideal CVH profile is associated with better physical function among stroke-and dementia-free older adults, partly via inflammatory mechanisms. The preventive implications of these findings warrant further investigation in cohort studies.
|
|
| 6. |
|
|
| 7. |
- Ren, Luyao, et al.
(author)
-
Quartet DNA reference materials and datasets for comprehensively evaluating germline variant calling performance
- 2023
-
In: Genome Biology. - : BioMed Central (BMC). - 1465-6906 .- 1474-760X. ; 24:1
-
Journal article (peer-reviewed)abstract
- BACKGROUND: Genomic DNA reference materials are widely recognized as essential for ensuring data quality in omics research. However, relying solely on reference datasets to evaluate the accuracy of variant calling results is incomplete, as they are limited to benchmark regions. Therefore, it is important to develop DNA reference materials that enable the assessment of variant detection performance across the entire genome.RESULTS: We established a DNA reference material suite from four immortalized cell lines derived from a family of parents and monozygotic twins. Comprehensive reference datasets of 4.2 million small variants and 15,000 structural variants were integrated and certified for evaluating the reliability of germline variant calls inside the benchmark regions. Importantly, the genetic built-in-truth of the Quartet family design enables estimation of the precision of variant calls outside the benchmark regions. Using the Quartet reference materials along with study samples, batch effects are objectively monitored and alleviated by training a machine learning model with the Quartet reference datasets to remove potential artifact calls. Moreover, the matched RNA and protein reference materials and datasets from the Quartet project enables cross-omics validation of variant calls from multiomics data.CONCLUSIONS: The Quartet DNA reference materials and reference datasets provide a unique resource for objectively assessing the quality of germline variant calls throughout the whole-genome regions and improving the reliability of large-scale genomic profiling.
|
|
| 8. |
- Blokland, G. A. M., et al.
(author)
-
Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders
- 2022
-
In: Biological Psychiatry. - : Elsevier BV. - 0006-3223 .- 1873-2402. ; 91:1, s. 102-117
-
Journal article (peer-reviewed)abstract
- Background: Sex differences in incidence and/or presentation of schizophrenia (SCZ), major depressive disorder (MDD), and bipolar disorder (BIP) are pervasive. Previous evidence for shared genetic risk and sex differences in brain abnormalities across disorders suggest possible shared sex-dependent genetic risk. Methods: We conducted the largest to date genome-wide genotype-by-sex (G×S) interaction of risk for these disorders using 85,735 cases (33,403 SCZ, 19,924 BIP, and 32,408 MDD) and 109,946 controls from the PGC (Psychiatric Genomics Consortium) and iPSYCH. Results: Across disorders, genome-wide significant single nucleotide polymorphism–by-sex interaction was detected for a locus encompassing NKAIN2 (rs117780815, p = 3.2 × 10−8), which interacts with sodium/potassium-transporting ATPase (adenosine triphosphatase) enzymes, implicating neuronal excitability. Three additional loci showed evidence (p < 1 × 10−6) for cross-disorder G×S interaction (rs7302529, p = 1.6 × 10−7; rs73033497, p = 8.8 × 10−7; rs7914279, p = 6.4 × 10−7), implicating various functions. Gene-based analyses identified G×S interaction across disorders (p = 8.97 × 10−7) with transcriptional inhibitor SLTM. Most significant in SCZ was a MOCOS gene locus (rs11665282, p = 1.5 × 10−7), implicating vascular endothelial cells. Secondary analysis of the PGC-SCZ dataset detected an interaction (rs13265509, p = 1.1 × 10−7) in a locus containing IDO2, a kynurenine pathway enzyme with immunoregulatory functions implicated in SCZ, BIP, and MDD. Pathway enrichment analysis detected significant G×S interaction of genes regulating vascular endothelial growth factor receptor signaling in MDD (false discovery rate-corrected p < .05). Conclusions: In the largest genome-wide G×S analysis of mood and psychotic disorders to date, there was substantial genetic overlap between the sexes. However, significant sex-dependent effects were enriched for genes related to neuronal development and immune and vascular functions across and within SCZ, BIP, and MDD at the variant, gene, and pathway levels. © 2021 Society of Biological Psychiatry
|
|
| 9. |
- Cao, Y., et al.
(author)
-
Enhanced corrosion protection by Al surface immobilization of in-situ grown layered double hydroxide films co-intercalated with inhibitors and low surface energy species
- 2020
-
In: Corrosion Science. - : Elsevier Ltd. - 0010-938X .- 1879-0496. ; 164
-
Journal article (peer-reviewed)abstract
- In this work, a novel in-situ grown layered double hydroxide (LDH) film co-intercalated with inhibitors (vanadates) and low surface energy substance (laurates) was immobilized on Al substrates. A long-term monitoring of electrochemical impedance spectra (EIS) of the various samples in 3.5 wt.% NaCl solution demonstrated the synergetic protection of the intercalated two functional species. Meanwhile, the X-ray diffraction (XRD) result of the samples after immersion in NaCl solution for a long time presented the anion-exchange process between vanadates/laurates and chlorides. The synergetic effect of the two species loaded film significantly contributed to the enhanced long-term corrosion protection of aluminum.
|
|
| 10. |
|
|
| 11. |
- Deng, Xiangyi, et al.
(author)
-
ECO : An Integrated Gene Expression Omnibus for Mouse Endothelial Cells In Vivo
- 2022
-
In: Frontiers in Genetics. - : Frontiers Media S.A.. - 1664-8021. ; 13
-
Journal article (peer-reviewed)abstract
- Endothelial cell (EC) plays critical roles in vascular physiological and pathological processes. With the development of high-throughput technologies, transcriptomics analysis of EC has increased dramatically and a large amount of informative data have been generated. The dynamic patterns of gene expression in ECs under various conditions were revealed. Unfortunately, due to the lack of bioinformatics infrastructures, reuse of these large-scale datasets is challenging for many scientists. Here, by systematic re-analyzing, integrating, and standardizing of 203 RNA sequencing samples from freshly isolated mouse ECs under 71 conditions, we constructed an integrated mouse EC gene expression omnibus (ECO). The ECO database enables one-click retrieval of endothelial expression profiles from different organs under different conditions including disease models, genetic modifications, and clinically relevant treatments in vivo. The EC expression profiles are visualized with user-friendly bar-plots. It also provides a convenient search tool for co-expressed genes. ECO facilitates endothelial research with an integrated tool and resource for transcriptome analysis. The ECO database is freely available at https://heomics. shinyapps.io/ecodb/.
|
|
| 12. |
- Duan, Xiaolin, et al.
(author)
-
Early Cambrian (Stage 4) brachiopods from the Shipai Formation in the Three Gorges area of South China
- 2021
-
In: Journal of Paleontology. - : Cambridge University Press. - 0022-3360 .- 1937-2337. ; 95:3, s. 497-526
-
Journal article (peer-reviewed)abstract
- Diverse and abundant fossil taxa have been described in the lower Cambrian Shipai Formation in the Three Gorges area of Hubei Province, South China, but the taxonomy and diversity of the co-occurring brachiopod fauna are still far from clear. Here we describe the brachiopod fauna recovered from the Shipai Formation in the Three Gorges area of South China, including representatives of the subphylum Linguliformea: linguloids (Lingulellotreta ergalievi, Eoobolus malongensis, and Neobolidae gen. indet. sp. indet.), and an acrotretoid (Linnarssonia sapushanensis); and representatives from the subphylum Rhynchonelliformea: the calcareous-shelled Kutorginates (Kutorgina sinensis, Kutorgina sp., and Nisusia liantuoensis). This brachiopod assemblage and the first occurrence of Linnarssonia sapushanensis shell beds permit correlation of the Shipai Formation in the Three Gorges area of Hubei Province with the Stage 4 Wulongqing Formation in the Wuding area of eastern Yunnan. This correlation is further strengthened by the first appearance datum (FAD) of the rhynchonelliform brachiopod Nisusia in the upper silty mudstone of both the Shipai and Wulongqing formations. The new well-preserved material, derived from siliciclastic rocks, also gives critical new insights into the fine shell structure of L. sapushanensis. Microstructural studies on micromorphic acrotretoids (like Linnarssonia) have previously been restricted to fossils that were acid-etched from limestones. This is the first study to carry out detailed comparative ultrastructural studies on acrotretoid shells preserved in siliciclastic rocks. This work reveals a hollow tube and solid column microstructure in the acrotretoid shells from the Shipai Formation, which is likely to be equivalent of traditional column and central canal observed in shells dissolved from limestones.
|
|
| 13. |
- Fan, Mei-Cen, et al.
(author)
-
Room-temperature extraction of individual elements from charged spent LiFePO4 batteries
- 2022
-
In: Rare Metals. - : Springer. - 1001-0521 .- 1867-7185.
-
Journal article (peer-reviewed)abstract
- Recycling millions of metric tons of spent LiFePO4 batteries would benefit human health while reducing resource depletion and environmental pollution. However, recovering individual elements from the spent batteries without generating waste is challenging. Here, we present a distinctive approach for recycling spent LiFePO4 batteries at room temperature, where water is the only leaching agent consumed. FePO4 and lithium intercalated graphite act as a precursor material for selectively extracting lithium, iron, and phosphorus through charging the LiFePO4 batteries to the delithiated state. NaOH solution extracted Fe from FePO4 within 30 min and regenerated without consumption, similar to a catalyst. Under the optimal leaching conditions (1 mol·L−1 NaOH, 0.5 h, NaOH/Fe molar ratio of 4.5), Fe and P leaching efficiencies achieved 89.1% and 99.2%, respectively. The methodology reflected in this research reduced the material cost per kg cathode material to a fraction of previously published reports, only occupies 6.13% of previous reports. In addition, the method improved the battery recycling revenue calculated by the EverBatt model by 2.31 times and 1.94 times over pyrometallurgical and hydrometallurgical methods. The proposed method allows for the convenient recovery of the elemental components of spent LiFePO4 batteries.
|
|
| 14. |
- Fan, Qunping, et al.
(author)
-
Unidirectional Sidechain Engineering to Construct Dual-Asymmetric Acceptors for 19.23 % Efficiency Organic Solar Cells with Low Energy Loss and Efficient Charge Transfer
- 2023
-
In: Angewandte Chemie International Edition. - : WILEY-V C H VERLAG GMBH. - 1433-7851 .- 1521-3773. ; 62:36
-
Journal article (peer-reviewed)abstract
- Achieving both high open-circuit voltage (V-oc) and short-circuit current density (J(sc)) to boost power-conversion efficiency (PCE) is a major challenge for organic solar cells (OSCs), wherein high energy loss (E-loss) and inefficient charge transfer usually take place. Here, three new Y-series acceptors of mono-asymmetric asy-YC11 and dual-asymmetric bi-asy-YC9 and bi-asy-YC12 are developed. They share the same asymmetric D(1)AD(2) (D-1=thieno[3,2-b]thiophene and D-2=selenopheno[3,2-b]thiophene) fused-core but have different unidirectional sidechain on D-1 side, allowing fine-tuned molecular properties, such as intermolecular interaction, packing pattern, and crystallinity. Among the binary blends, the PM6 : bi-asy-YC12 one has better morphology with appropriate phase separation and higher order packing than the PM6 : asy-YC9 and PM6 : bi-asy-YC11 ones. Therefore, the PM6 : bi-asy-YC12-based OSCs offer a higher PCE of 17.16 % with both high V-oc and J(sc), due to the reduced E-loss and efficient charge transfer properties. Inspired by the high V-oc and strong NIR-absorption, bi-asy-YC12 is introduced into efficient binary PM6 : L8-BO to construct ternary OSCs. Thanks to the broadened absorption, optimized morphology, and furtherly minimized E-loss, the PM6 : L8-BO : bi-asy-YC12-based OSCs achieve a champion PCE of 19.23 %, which is one of the highest efficiencies among these annealing-free devices. Our developed unidirectional sidechain engineering for constructing bi-asymmetric Y-series acceptors provides an approach to boost PCE of OSCs.
|
|
| 15. |
- Fang, Ruisen, et al.
(author)
-
Late Ediacaran cavity-dwelling filamentous microorganisms accommodated in a valve-like organism from the uppermost Dengying Formation in eastern Yunnan of South China
- 2022
-
In: Precambrian Research. - : Elsevier. - 0301-9268 .- 1872-7433. ; 379
-
Journal article (peer-reviewed)abstract
- The Ediacaran–Cambrian transition, one of the major turning points in Earth’s history, is characterized by an epoch-making change in biosphere. In South China, the late Ediacaran Dengying Formation (ca. 551–538 Ma) is an important stratigraphic unit yielding trace fossils, tubular skeletal fossils and some complex forms that represent possible bilateral animals. The fossil-bearing Ediacaran strata of eastern Yunnan is hitherto known from the Jiucheng Member containing the Jiangchuan Biota, together with the enigmatic cosmopolitan taxon Shaanxilithes. Here, we present for the first time cavity-dwelling filamentous microorganisms accommodated within a valve-like fossil from the upper Baiyanshao Member of the Dengying Formation at the Sujiawa Section in Huize County, eastern Yunnan of China. SEM scanning and Micro-CT reconstruction indicate that the well-preserved filaments were characterized by mycelial network structures with abundant branching pattern. Preservation of filamentous microorganisms might result from the decay process of soft parts that were originally accommodated and enclosed within the valve-like organism, and subsequently preserved by early diagenetic phosphatization, which obscures their original organic identity and chemical composition. This paper potentially presents the first fossil evidence of a saprophytic relationship between microorganisms as decomposers and a valve-like organism prior to the eve of the Cambrian Explosion of metazoan animals.
|
|
| 16. |
- Fu, Rao, et al.
(author)
-
First report of Sphenothallus Hall, 1847 from the lower Cambrian of North China
- 2023
-
In: Alcheringa. - 0311-5518 .- 1752-0754. ; , s. 1-9
-
Journal article (peer-reviewed)abstract
- Sphenothallus is a tubular organism that is one of the most widely distributed and longest-ranging genera through the Palaeozoic. Despite its apparent cosmopolitan distribution, the genus has never been reported from North China. New specimens of Sphenothallus sp. have been discovered in the upper part of the Houjiashan and base of the Mantou formations (early to middle Age 4, Epoch 2, Cambrian) in Jiangsu Province, North China. The specimens are small tubes (up to 5 mm long) and have typical Sphenothallus characteristics, such as a multilayered lamellar structure, and subcircular to elliptical transverse cross-section with a pair of longitudinal thickenings situated at the widest diameter. Our material shows that both the rate of apertural expansion and the curvature of the tubes are significantly larger in early growth stages than in the later growth stages. As the diameter of the aperture increases, the transverse cross-section of the Sphenothallus sp. tube changes from subcircular at the proximal end to elliptical or lenticular at the distal end, and its wall thickness changes from uniform to thickening longitudinally. The discovery of Sphenothallus sp. from the North China Platform represents an extension of its palaeogeographic range during the Cambrian.
|
|
| 17. |
- He, YQ, et al.
(author)
-
A polygenic risk score for nasopharyngeal carcinoma shows potential for risk stratification and personalized screening
- 2022
-
In: Nature communications. - : Springer Science and Business Media LLC. - 2041-1723. ; 13:1, s. 1966-
-
Journal article (peer-reviewed)abstract
- Polygenic risk scores (PRS) have the potential to identify individuals at risk of diseases, optimizing treatment, and predicting survival outcomes. Here, we construct and validate a genome-wide association study (GWAS) derived PRS for nasopharyngeal carcinoma (NPC), using a multi-center study of six populations (6 059 NPC cases and 7 582 controls), and evaluate its utility in a nested case-control study. We show that the PRS enables effective identification of NPC high-risk individuals (AUC = 0.65) and improves the risk prediction with the PRS incremental deciles in each population (Ptrend ranging from 2.79 × 10−7 to 4.79 × 10−44). By incorporating the PRS into EBV-serology-based NPC screening, the test’s positive predictive value (PPV) is increased from an average of 4.84% to 8.38% and 11.91% in the top 10% and 5% PRS, respectively. In summary, the GWAS-derived PRS, together with the EBV test, significantly improves NPC risk stratification and informs personalized screening.
|
|
| 18. |
- Huang, ZQ, et al.
(author)
-
Antagonistic action of GPS2 and KDM1A at enhancers governs alternative macrophage activation by interleukin 4
- 2023
-
In: Nucleic acids research. - : Oxford University Press (OUP). - 1362-4962 .- 0305-1048. ; 51:3, s. 1067-1086
-
Journal article (peer-reviewed)abstract
- The Th2 cytokine interleukin 4 (IL4) promotes macrophage differentiation into alternative subtypes and plays important roles in physiology, in metabolic and inflammatory diseases, in cancer and in tissue regeneration. While the regulatory transcription factor networks governing IL4 signaling are already well-characterized, it is currently less understood which transcriptional coregulators are involved and how they operate mechanistically. In this study, we discover that G protein pathway suppressor 2 (GPS2), a core subunit of the HDAC3 corepressor complex assembled by SMRT and NCOR, represses IL4-dependent enhancer activation in mouse macrophages. Our genome-wide and gene-specific characterization revealed that, instead of directly repressing STAT6, chromatin-bound GPS2 cooperates with SMRT and NCOR to antagonize enhancer activation by lysine demethylase 1A (KDM1A, LSD1). Mechanistically, corepressor depletion increased KDM1A recruitment to enhancers linked to IL4-induced genes, accompanied by demethylation of the repressive histone marks H3K9me2/3 without affecting H3K4me1/2, the classic KDM1A substrates for demethylation in other cellular contexts. This in turn caused enhancer and gene activation already in the absence of IL4/STAT6 and sensitized the STAT6-dependent IL4 responsiveness of macrophages. Thus, our work identified with the antagonistic action of a GPS2-containing corepressor complex and the lysine demethylase KDM1A a hitherto unknown epigenetic corepressor-coactivator switching mechanism that governs alternative macrophage activation.
|
|
| 19. |
|
|
| 20. |
- Jia, Xiaomin, et al.
(author)
-
Single crystal metal-organic framework constructed by vertically self-pillared nanosheets and its derivative for oriented lithium plating
- 2021
-
In: Cuihuà xuébào. - : Elsevier BV. - 0253-9837 .- 1872-2067. ; 42:9, s. 1553-1560
-
Journal article (peer-reviewed)abstract
- This vertically self-pillared (VSP) structure extends the application range of traditional porous materials with facile mass/ion transport and enhanced reaction kinetics. Here, we prepare a single crystal metal-organic framework (MOF), employing the ZIF-67 structure as a proof of concept, which is constructed by vertically self-pillared nanosheets (VSP-MOF). We further converted VSP-MOF into VSP-cobalt sulfide (VSP-CoS2) through a sulfidation process. Catalysis plays an important role in almost all battery technologies; for metallic batteries, lithium anodes exhibit a high theoretical specific capacity, low density, and low redox potential. However, during the half-cell reaction (Li++e=Li), uncontrolled dendritic Li penetrates the separator and solid electrolyte interphase layer. When employed as a composite scaffold for lithium metal deposition, there are many advantage to using this framework: 1) the VSP-CoS2 substrate provides a high specific surface area to dissipate the ion flux and mass transfer and acts as a pre-catalyst, 2) the catalytic Co center favors the charge transfer process and preferentially binds the Li+ with the enhanced electrical fields, and 3) the VSP structure guides the metallic propagation along the nanosheet 2D orientation without the protrusive dendrites. All these features enable the VSP structure in metallic batteries with encouraging performances.
|
|
| 21. |
- Jiang, Jizhong, et al.
(author)
-
Synergistic strain engineering of perovskite single crystals for highly stable and sensitive X-ray detectors with low-bias imaging and monitoring
- 2022
-
In: Nature Photonics. - : Nature Portfolio. - 1749-4885 .- 1749-4893. ; 16:8, s. 575-581
-
Journal article (peer-reviewed)abstract
- X-ray detectors based on dual-site-doped perovskite single crystals exhibit excellent sensitivity of 2.6 x 10(4) mu C Gy(air)(-1) cm(-2) under a low field of 1 V cm(-1). The detectable dose rate is as low as 7.09 nGy(air) s(-1). The operational stability is beyond half a year. Although three-dimensional metal halide perovskite (ABX(3)) single crystals are promising next-generation materials for radiation detection, state-of-the-art perovskite X-ray detectors include methylammonium as A-site cations, limiting the operational stability. Previous efforts to improve the stability using formamidinium-caesium-alloyed A-site cations usually sacrifice the detection performance because of high trap densities. Here we successfully solve this trade-off between stability and detection performance by synergistic composition engineering, where we include A-site alloys to decrease the trap density and B-site dopants to release the microstrain induced by A-site alloying. As such, we develop high-performance perovskite X-ray detectors with excellent stability. Our X-ray detectors exhibit high sensitivity of (2.6 +/- 0.1) x 10(4) mu C Gy(air)(-1) cm(-2) under 1 V cm(-1) and ultralow limit of detection of 7.09 nGy(air) s(-1). In addition, they feature long-term operational stability over half a year and impressive thermal stability up to 125 degrees C. We further demonstrate the promise of our perovskite X-ray detectors for low-bias portable applications with high-quality X-ray imaging and monitoring prototypes.
|
|
| 22. |
- Kang, Nai-xin, et al.
(author)
-
Anemoside B4 inhibits enterovirus 71 propagation in mice through upregulating 14-3-3 expression and type I interferon responses
- 2022
-
In: Acta Pharmacologica Sinica. - : Springer Nature. - 1671-4083 .- 1745-7254. ; 43, s. 977-991
-
Journal article (peer-reviewed)abstract
- Enterovirus 71 (EV71) is the major pathogens of human hand, foot, and mouth disease (HFMD). EV71 efficiently escapes innate immunity responses of the host to cause infection. At present, no effective antiviral drugs for EV71 are available. Anemoside B4 (B4) is a natural saponin isolated from the roots of Pulsatilla chinensis (Bunge) Regel. P. chinensis extracts that shows a wide variety of biological activities. In this study, we investigated the antiviral activities of B4 against EV71 both in cell culture and in suckling mice. We showed that B4 (12.5-200 mu M) dose dependently increased the viability of EV71-infected RD cells with an IC50 value of 24.95 +/- 0.05 mu M against EV71. The antiviral activity of B4 was associated with enhanced interferon (IFN)-beta response, since knockdown of IFN-beta abolished its antiviral activity. We also confirmed that the enhanced IFN response was mediated via activation of retinoic acid-inducible gene I (RIG-I) like receptors (RLRs) pathway, and it was executed by upregulation of 14-3-3 protein, which disrupted the interaction between yes-associated protein (YAP) and interferon regulatory factor 3 (IRF3). By using amino acids in cell culture (SILAC)-based proteomics profiling, we identified the Hippo pathway as the top-ranking functional cluster in B4-treated EV71-infected cells. In vivo experiments were conducted in suckling mice (2-day-old) infected with EV71 and subsequently B4 (200 mg center dot kg(-1) center dot d(-1), i.p.) was administered for 16 days. We showed that B4 administration effectively suppressed EV71 replication and improved muscle inflammation and limb activity. Meanwhile, B4 administration regulated the expressions of HFMD biomarkers IL-10 and IFN-gamma, attenuating complications of EV71 infection. Collectively, our results suggest that B4 could enhance the antiviral effect of IFN-beta by orchestrating Hippo and RLRs pathway, and B4 would be a potential lead compound for developing an anti-EV71 drug.
|
|
| 23. |
|
|
| 24. |
- Liang, Yue, et al.
(author)
-
Late Ordovician lingulid brachiopods from the Pingliang Formation (Shaanxi Province, North China) : Morphological and ecological implications
- 2024
-
In: Journal of Asian Earth Sciences. - : Elsevier. - 1367-9120 .- 1878-5786. ; 263
-
Journal article (peer-reviewed)abstract
- Brachiopods first appeared in the early Cambrian and persist till present. They are one of the main lineages of marine invertebrates that diversified throughout the Paleozoic and reached their maximum diversity of high-rank taxonomy during the Ordovician. During this time interval, brachiopods were mainly dominated by the articulated Orthida and Strophomenida, which represent major components of the Paleozoic Evolutionary Fauna; however, the inarticulated lingulid brachiopods (Order Lingulida) were comparatively less abundant and received less attention during this time period. Here, we report a new record of the lingulid brachiopod Anomaloglossa porca from the Upper Ordovician (Sandbian) Pingliang Formation of the Xilinggou Section, Shaanxi Province, North China. Collected specimens are preserved as calcium phosphatic shells with highly mineralization which preserve detailed morphology and shell ornamentation of both ventral and dorsal valves. The new occurrence of A. porca extends its paleogeographic distribution from Gondwana and Tarim to North China Platform. Moreover, comprehensive geometric morphometric analysis of A. porca is performed and the results indicate that both the shell shape and pseudointerarea are very close to the recent infaunal lingulids. If interpreted correctly, the fossils represent the first example of infaunal lifestyles achieved by Ordovician lingulids from North China, exhibiting the ecological complexities of the Late Ordovician benthos composed of epibenthos and infaunas as well.
|
|
| 25. |
- Liang, Zhi, et al.
(author)
-
Development of computational framework for titanium alloy phase transformation prediction in laser powder-bed fusion additive manufacturing
- 2020
-
In: Materialia. - : Elsevier. - 2589-1529. ; 14
-
Journal article (peer-reviewed)abstract
- In conjunction with bare metal single laser track validation experiments, a computational framework is proposed to accelerate the design and development of new additive manufacturing (AM) specific alloys. Specifically, Additive Manufacturing-Computational Fluid Dynamics (AM-CFD) and Calculation of Phase Diagram (CALPHAD), were combined to predict location-specific beta ->alpha phase transformation for a new Ti-Al-Fe-alloy. This modeling work was validated by rigorous spatially resolved synchrotron-based X-ray diffraction measurements. This framework reasonably predicts the melt pool and heat affected zone features in the experiment and reveals their significance in actual AM conditions. This framework can be applied for rapid and comprehensive evaluation of location-specific thermal history, phase, microstructure, and properties for new AM titanium alloy development.
|
|
| 26. |
- Luo, Mei, et al.
(author)
-
First Report of Small Skeletal Fossils from the Upper Guojiaba Formation (Series 2, Cambrian), Southern Shaanxi, South China
- 2023
-
In: Biology. - : MDPI. - 2079-7737. ; 12:7
-
Journal article (peer-reviewed)abstract
- A small skeletal fossil assemblage is described for the first time from the bioclastic limestone interbeds of the siltstone-dominated Guojiaba Formation, southern Shaanxi, China. The carbonate-hosted fossils include brachiopods (Eohadrotreta zhujiahensis, Eohadrotreta zhenbaensis, Spinobolus sp., Kuangshanotreta malungensis, Kyrshabaktella sp., Lingulellotreta yuanshanensis, Eoobolus incipiens, and Eoobolus sp.), sphenothallids (Sphenothallus sp.), archaeocyaths (Robustocyathus sp. and Yukonocyathus sp.), bradoriids (Kunmingella douvillei), chancelloriids sclerites (Onychia sp., Allonnia sp., Diminia sp., Archiasterella pentactina, and Chancelloria cf. eros), echinoderm plates, fragments of trilobites (Eoredlichia sp.), and hyolithelminths. The discovery of archaeocyaths in the Guojiaba Formation significantly extends their stratigraphic range in South China from the early Tsanglangpuian at least to the late Chiungchussuan. Thus, the Guojiaba Formation now represents the lowest known stratigraphic horizon where archaeocyath fossils have been found in the southern Shaanxi area. The overall assemblage is most comparable, in terms of composition, to Small skeletal fossil (SSF) assemblages from the early Cambrian Chengjiang fauna recovered from the Yu’anshan Formation in eastern Yunnan Province. The existing position that the Guojiaba Formation is correlated with Stage 3 in Cambrian Series 2 is strongly upheld based on the fossil assemblage recovered in this study.Simple SummarySmall skeletal fossils are reported for the first time from the early Cambrian Guojiaba Formation, southern Shaanxi, China. All specimens were recovered from bioclastic limestone interbeds and encompass a wide variety of skeletal clades, including brachiopods, sphenothallids, archaeocyaths, bradoriids, sponge spicules, echinoderm plates, and trilobite spines. The archaeocyaths described herein are considerably older than those described from the Xiannvdong Formation, which was previously assumed to contain the lowest archaeocyath-bearing horizons in South China. The brachiopod Lingulellotreta yuanshanensis is recorded for the first time from the Fucheng area, with previous records confined mainly to the Chengjiang Fauna-bearing Yu’anshan Formation in the lower Cambrian, the eastern Yunnan Province. Micro-morphological and elemental analyses of the small skeletal fossil assemblages were carried out using SEM, BSEM, and Micro X–ray fluorescence. The skeletal fauna in the Guojiaba Formation resembles the assemblages recovered from the upper Yu’anshan Formation (Chengjiang Fauna) in eastern Yunnan Province. Based on the recovered assemblage, the biostratigraphic age of the Guojiaba Formation correlates with the Chiungchussuan Stage (Stage 3 of Cambrian Series 2).
|
|
| 27. |
- Luo, Yifei, et al.
(author)
-
Technology Roadmap for Flexible Sensors
- 2023
-
In: ACS Nano. - : American Chemical Society. - 1936-0851 .- 1936-086X. ; 17:6, s. 5211-5295
-
Research review (peer-reviewed)abstract
- Humans rely increasingly on sensors to address grand challenges and to improve quality of life in the era of digitalization and big data. For ubiquitous sensing, flexible sensors are developed to overcome the limitations of conventional rigid counterparts. Despite rapid advancement in bench-side research over the last decade, the market adoption of flexible sensors remains limited. To ease and to expedite their deployment, here, we identify bottlenecks hindering the maturation of flexible sensors and propose promising solutions. We first analyze challenges in achieving satisfactory sensing performance for real-world applications and then summarize issues in compatible sensor-biology interfaces, followed by brief discussions on powering and connecting sensor networks. Issues en route to commercialization and for sustainable growth of the sector are also analyzed, highlighting environmental concerns and emphasizing nontechnical issues such as business, regulatory, and ethical considerations. Additionally, we look at future intelligent flexible sensors. In proposing a comprehensive roadmap, we hope to steer research efforts towards common goals and to guide coordinated development strategies from disparate communities. Through such collaborative efforts, scientific breakthroughs can be made sooner and capitalized for the betterment of humanity.
|
|
| 28. |
- Lv, Zhong-Peng, et al.
(author)
-
Cation field-strength effects on ion irradiation-induced mechanical property changes of borosilicate glass structures
- 2023
-
In: Journal of The American Ceramic Society. - 0002-7820 .- 1551-2916. ; 106:10, s. 5766-5780
-
Journal article (peer-reviewed)abstract
- We examine the impact of the glass network-modifier cation field strength (CFS) on ion irradiation-induced mechanical property changes in borosilicate (BS) glasses for the ternary M2O-B2O3-SiO2 systems with M = {Na, K, Rb} and the quaternary [0.5M((2))O-0.5Na(2)O]-B2O3-SiO2 systems with M = {Li, Na, K, Rb Mg, Ca, Sr, Ba}. B-11 nuclear magnetic resonance (NMR) experiments on the as-prepared BS glasses yielded the fractional population of four-coordinated B species (B-[4]) out of all {B-[3], B-[4]} groups in the glass network, along with the fraction of B-[4]-O-Si linkages out of all B-[4]-O-Si/B bonds. Both parameters correlated linearly with the (average) CFS of the M+ and/or {M(2)+, Na+} cations. Both the nanoindentation-derived hardness and Young's modulus values of the glasses reduced upon their irradiation by Si2+ ions, with the property deterioration decreasing linearly with increasing Mz+ CFS, that is, for higher Mz+center dot center dot center dot O interaction strength. The irradiation damage of the glass network also increased linearly with the fraction of B-[4]-O-Si linkages, which are the second weakest in the structure after the Mz+center dot center dot center dot O bonds. Our results underscore the advantages of employing BS glasses with high-CFS cations for enhancing the radiation resistance for nuclear waste storage.
|
|
| 29. |
|
|
| 30. |
- Peng, Xin, et al.
(author)
-
Optimal site selection for the remote-monitoring sulfur content of ship fuels in ports
- 2022
-
In: Ocean and Coastal Management. - : Elsevier. - 0964-5691 .- 1873-524X. ; 225
-
Journal article (peer-reviewed)abstract
- The remote monitoring method based on air-quality monitoring sensors is a common way to monitor the FSC (fuel sulfur content) of oils for ships. Considering the influences of geographical environments, atmospheric conditions, regional ship traffic flow, emission characteristics of ships, and height of monitoring sensors on the monitor station chosen, a new method was proposed to optimize the site selection for monitoring the FSC of fuel oils used by ships in waters of the port. SO2 numeric simulation and observation from sensors were integrated to estimate the FSCs. The proposed method was utilized to recommend the sites of the fixed sniffing monitoring stations in Yantian port, Shenzhen, China from June and July 2018. The results showed that the experimental stations could monitor FSCs, and the relative difference between the estimated and actual FSCs of ships was 16.34%. The proposed method for recommending sites of FSC monitoring sensors contributed to intelligently supervising air pollutants emitted from ships and fuel oils of ships in the emission control areas of China.
|
|
| 31. |
|
|
| 32. |
-
The Seventeenth Data Release of the Sloan Digital Sky Surveys : Complete Release of MaNGA, MaStar, and APOGEE-2 Data
- 2022
-
In: Astrophysical Journal Supplement Series. - : Institute of Physics (IOP). - 0067-0049 .- 1538-4365. ; 259:2
-
Journal article (peer-reviewed)abstract
- This paper documents the seventeenth data release (DR17) from the Sloan Digital Sky Surveys; the fifth and final release from the fourth phase (SDSS-IV). DR17 contains the complete release of the Mapping Nearby Galaxies at Apache Point Observatory (MaNGA) survey, which reached its goal of surveying over 10,000 nearby galaxies. The complete release of the MaNGA Stellar Library accompanies this data, providing observations of almost 30,000 stars through the MaNGA instrument during bright time. DR17 also contains the complete release of the Apache Point Observatory Galactic Evolution Experiment 2 survey that publicly releases infrared spectra of over 650,000 stars. The main sample from the Extended Baryon Oscillation Spectroscopic Survey (eBOSS), as well as the subsurvey Time Domain Spectroscopic Survey data were fully released in DR16. New single-fiber optical spectroscopy released in DR17 is from the SPectroscipic IDentification of ERosita Survey subsurvey and the eBOSS-RM program. Along with the primary data sets, DR17 includes 25 new or updated value-added catalogs. This paper concludes the release of SDSS-IV survey data. SDSS continues into its fifth phase with observations already underway for the Milky Way Mapper, Local Volume Mapper, and Black Hole Mapper surveys.
|
|
| 33. |
- Wang, Xudong, et al.
(author)
-
Archives of short-term fluid flow dynamics and possible influence of human activities at methane seeps: Evidence from high-resolution element geochemistry of chemosynthetic bivalve shells
- 2022
-
In: Frontiers in Marine Science. - : Frontiers Media SA. - 2296-7745. ; 9
-
Journal article (peer-reviewed)abstract
- The natural dynamics of fluid flow at methane seeps and increasingly human activities influence the biogeochemistry of the microenvironment and further determine the activity of the chemosynthetic communities within these ecosystems. However, ways to reconstruct short-term fluid flow dynamics and to decipher the influence of scientific exploration at seeps are limited. In this study, we present high-resolution trace elements/Ca ratios (Li/Ca, Mg/Ca, Ti/Ca, Mn/Ca, Co/Ca, Cu/Ca, Zn/Ca, Sr/Ca, Zr/Ca, Mo/Ca, Ba/Ca, Th/Ca and U/Ca ratios) from the shells of two species of chemosymbiotic bivalves (the thiotrophic vesicomyid clam Archivesica marissinica and the methanotrophic mussel Gigantidas haimaensis) from the Haima cold seeps of the South China Sea. We found that the complex distribution patterns of some trace elements (Mg/Ca, Sr/Ca, Mo/Ca and U/Ca ratios) in G. haimaensis are largely controlled by mineral composition or age. The observation of Co/Ca and Ba/Ca ratios in both species indicate strong physiological and environmental control on the incorporation of trace elements during the biomineralization process. Besides, the distribution patterns of other trace elements provide information that can be used to discuss open issues such as the loss of trace elements after death of the bivalves, and the possible influence of human activities such as sediment disturbance. Overall, this study emphasizes the potential for using high-resolution element geochemistry of seep bivalve shells to reveal the physiological and environmental factors that control the growth of bivalves, and to elucidate the potential history of fluid discharge at cold seeps.
|
|
| 34. |
- Wang, Xiao-Cheng, et al.
(author)
-
Identification of a lncRNA prognostic signature-related to stem cell index and its significance in colorectal cancer
- 2021
-
In: Future Oncology. - : FUTURE MEDICINE LTD. - 1479-6694 .- 1744-8301. ; 17:23, s. 3087-3100
-
Journal article (peer-reviewed)abstract
- Background: The relationship between long noncoding RNAs (lncRNAs) and the mRNA stemness index (mRNAsi) in colorectal cancer (CRC) is still unclear. Materials & methods: The mRNAsi, mRNAsi-related lncRNAs and their clinical significance were analyzed by bioinformatic approaches in The Cancer Genome Atlas (TCGA)-COREAD dataset. Results: mRNAsi was negatively related to pathological features but positively related to overall survival and recurrence-free survival in CRC. A five mRNAsi-related lncRNAs prognostic signature was further developed and showed independent prognostic factors related to overall survival in CRC patients, due to the five mRNAsi-related lncRNAs involved in several pathways of the cancer stem cells and malignant cancer cell phenotypes. Conclusion: The present study highlights the potential roles of mRNAsi-related lncRNAs as alternative prognostic markers. Lay abstract: Previous evidence has indicated that the mRNA stem index (mRNAsi) is representative of the stemness of cancer stem cells (CSCs), whereas long noncoding RNAs (lncRNAs) may be crucial regulators in CSC phenotype. Nevertheless, the relationship between lncRNAs and mRNAsi in CRC is still unclear. Our results show that the mRNAsi was negatively related to pathological features and positively related to prognosis in CRC. Five mRNAsi-related lncRNAs were further identified and developed as a prognostic signature that could independently predict survival in CRC patients due to the five mRNAsi-related lncRNAs being involved in several pathways of CSCs and malignant cancer cell phenotypes, indicating the potential roles of mRNAsi-related lncRNAs as alternative prognostic markers.
|
|
| 35. |
- Wang, Yanzhi, et al.
(author)
-
Anchoring Fe Species on the Highly Curved Surface of S and N Co-Doped Carbonaceous Nanosprings for Oxygen Electrocatalysis and a Flexible Zinc-Air Battery
- 2024
-
In: Angewandte Chemie International Edition. - 1433-7851 .- 1521-3773. ; 63:7
-
Journal article (peer-reviewed)abstract
- Oxygen reduction reaction (ORR) is of critical significance in the advancement of fuel cells and zinc-air batteries. The iron-nitrogen (Fe−Nx) sites exhibited exceptional reactivity towards ORR. However, the task of designing and controlling the local structure of Fe species for high ORR activity and stability remains a challenge. Herein, we have achieved successful immobilization of Fe species onto the highly curved surface of S, N co-doped carbonaceous nanosprings (denoted as FeNS/Fe3C@CNS). The induction of this twisted configuration within FeNS/Fe3C@CNS arose from the assembly of chiral templates. For electrocatalytic ORR tests, FeNS/Fe3C@CNS exhibits a half-wave potential (E1/2) of 0.91 V in alkaline medium and a E1/2 of 0.78 V in acidic medium. The Fe single atoms and Fe3C nanoparticles are coexistent and play as active centers within FeNS/Fe3C@CNS. The highly curved surface, coupled with S substitution in the coordination layer, served to reduce the energy barrier for ORR, thereby enhancing the intrinsic catalytic activity of the Fe single-atom sites. We also assembled a wearable flexible Zn-air battery using FeNS/Fe3C@CNS as electrocatalysts. This work provides new insights into the construction of highly curved surfaces within carbon materials, offering high electrocatalytic efficacy and remarkable performance for flexible energy conversion devices.
|
|
| 36. |
- Wu, Yitong, et al.
(author)
-
Numerical and experiment study on ventilation performance of the equipment compartment of Alpine high-speed train
- 2023
-
In: Engineering Applications of Computational Fluid Mechanics. - 1994-2060 .- 1997-003X. ; 17:1
-
Journal article (peer-reviewed)abstract
- Alpine High-Speed Train serves on the Lanzhou-Urumqi Line in northwest China, where the terrain is mainly the Gobi Desert. To adapt to this complex environment, the independent-air duct is mainly used for the electrical facilities inside the equipment compartment to prevent the spread of sand particles. This isolated air duct makes ventilation characteristics of the equipment susceptible to the external environment. For this reason, this work aims to clarify and investigate the ventilation characteristic of electrical facilities. A two-step simulation method using IDDES (Improved Delayed Detached Eddy Simulation) and a real-vehicle tracking test using the T-typed pitot tubes were conducted. In the simulation, it is found that the ventilation performance can be influenced by the location of the equipment compartment, facilities and the fan mounted inside. By comparing the results of the test and simulation, they share the same characteristic that the air outlet volume of the converter near the head car is being promoted while it near the tail car is being inhibited. The maximum deviation ratio between the test and simulation is 9%. Therefore, the measurement method in this study is relatively reliable.
|
|
| 37. |
- Xie, Yuan, et al.
(author)
-
Wnt signaling regulates MFSD2A-dependent drug delivery through endothelial transcytosis in glioma
- 2023
-
In: Neuro-Oncology. - : Oxford University Press. - 1522-8517 .- 1523-5866. ; 25:6, s. 1073-1084
-
Journal article (peer-reviewed)abstract
- Background: Systemic delivery of anti-tumor therapeutic agents to brain tumors is thwarted by the blood-brain barrier (BBB), an organotypic specialization of brain endothelial cells (ECs). A failure of pharmacological compounds to cross BBB is one culprit for the dismal prognosis of glioblastoma (GBM) patients. Identification of novel vascular targets to overcome the challenges posed by the BBB in tumors for GBM treatment is urgently needed.Methods: Temozolomide (TMZ) delivery was investigated in CT2A and PDGFB-driven RCAS/tv-a orthotopic glioma models. Transcriptome analysis was performed on ECs from murine gliomas. Mfsd2a deficient, Cav1 deficient, and Mfsd2a EC-specific inducible mice were developed to study the underlying molecular mechanisms.Results: We demonstrated that inhibiting Wnt signaling by LGK974 could increase TMZ delivery and sensitize glioma to chemotherapy in both murine glioma models. Transcriptome analysis of ECs from murine gliomas revealed that Wnt signaling inhibition enhanced vascular transcytosis as indicated by the upregulation of PLVAP and downregulation of MFSD2A. Mfsd2a deficiency in mice enhances TMZ delivery in tumors, whereas constitutive expression of Mfsd2a in ECs suppresses the enhanced TMZ delivery induced by Wnt pathway inhibition in murine glioma. In addition, Wnt signaling inhibition enhanced caveolin-1 (Cav1)-positive caveolae-mediated transcytosis in tumor ECs. Moreover, Wnt signaling inhibitor or Mfsd2a deficiency fails to enhance TMZ penetration in tumors from Cav1-deficient mice.Conclusions: These results demonstrated that Wnt signaling regulates MFSD2A-dependent TMZ delivery through a caveolae-mediated EC transcytosis pathway. Our findings identify Wnt signaling as a promising therapeutic target to improve drug delivery for GBM treatment.
|
|
| 38. |
- Xiong, Min, et al.
(author)
-
Tailoring Phase Purity in the 2D/3D Perovskite Heterostructures Using Lattice Mismatch
- 2022
-
In: ACS Energy Letters. - : AMER CHEMICAL SOC. - 2380-8195. ; 7:1, s. 550-559
-
Journal article (peer-reviewed)abstract
- Although the fabrication of two-dimensional (2D)/three-dimensional (3D) halide perovskite heterostructures has been employed to balance the long-term stability and high efficiency of perovskite solar cells, the formation of metastable quasi-2D perovskites remains the most serious challenge. Here, we demonstrate that large lattice mismatch derived from halide and cation differences between 2D and 3D perovskites are key to avoiding the formation of unintended 2D phases in the preparation of 2D/3D bulk heterostructure because the phase transformation becomes less thermodynamically favorable. Specifically, by employing chloride 2D perovskite (PYA)(2) PbCl4 (PYA = propargylammonium) crystals into a 3D precursor solution, we achieve a phase-pure 2D/3D heterojunction with clean type-I band alignment, which exhibits greatly reduced charge recombination. Furthermore, the incorporation of alkyne perovskites is also shown to suppress iodine diffusion and formation due to their exceptional iodine capture capacity. The resultant 2D/3D heterostructured devices exhibited enhanced efficiencies and stabilities compared with their 3D counterparts.
|
|
| 39. |
|
|
| 40. |
- Yang, Fan, et al.
(author)
-
Uncovering a Distinct Gene Signature in Endothelial Cells Associated With Contrast Enhancement in Glioblastoma
- 2021
-
In: Frontiers in Oncology. - : Frontiers Media S.A.. - 2234-943X. ; 11
-
Journal article (peer-reviewed)abstract
- Purpose Glioblastoma (GBM) is the most aggressive and lethal type of brain tumors. Magnetic resonance imaging (MRI) has been commonly used for GBM diagnosis. Contrast enhancement (CE) on T1-weighted sequences are presented in nearly all GBM as a result of high vascular permeability in glioblastomas. Although several radiomics studies indicated that CE is associated with distinct molecular signatures in tumors, the effects of vascular endothelial cells, the key component of blood brain barrier (BBB) controlling vascular permeability, on CE have not been thoroughly analyzed. Methods Endothelial cell enriched genes have been identified using transcriptome data from 128 patients by a systematic method based on correlation analysis. Distinct endothelial cell enriched genes associated with CE were identified by analyzing difference of correlation score between CE-high and CE-low GBM cases. Immunohistochemical staining was performed on in-house patient cohort to validate the selected genes associated with CE. Moreover, a survival analysis was conducted to uncover the relation between CE and patient survival. Results We illustrated that CE is associated with distinct vascular molecular imprints characterized by up-regulation of pro-inflammatory genes and deregulation of BBB related genes. Among them, PLVAP is up-regulated, whereas TJP1 and ABCG2 are down-regulated in the vasculature of GBM with high CE. In addition, we found that the high CE is associated with poor prognosis and GBM mesenchymal subtype. Conclusion We provide an additional insight to reveal the molecular trait for CE in MRI images with special focus on vascular endothelial cells, linking CE with BBB disruption in the molecular level. This study provides a potential new direction that may be applied for the treatment optimization based on MRI features.
|
|
| 41. |
- Yang, Xuan, et al.
(author)
-
Geochemical records and environmental analysis of the Ediacaran-Cambrian boundary in Eastern Yunnan, South China
- 2023
-
In: Frontiers in Earth Science. - 2296-6463. ; 11
-
Journal article (peer-reviewed)abstract
- The Ediacaran–Cambrian transition is characterized by an unprecedented change in biosphere, lithosphere, and atmosphere. However, the identification of this transition and its global correlation remains debated. East Yunnan is a region of utmost importance in the study of the Ediacaran-Cambrian transition. Although strata from this region have been well studied, recognition of the base of the Cambrian continues to be controversial. This paper presents, a carbon chemostratigraphic isotope and trace element profile through the Dengying and Zhujiaqing formations in the Sujiawa section in East Yunnan. Through carbon isotope and trace element analyses of the Dengying and Zhujiaqing formations we attempt to regionally correlate the section and discuss the paleo-marine redox environment changes during this period. The Fe content of samples is low and the Mn/Sr ratios of the majority of the Sujiawa section samples is lower than 10 and shows no correlations with δ13Ccarb and δ18Ocarb values, indicating that the samples retain near-primary δ13Ccarb characteristics. The carbon isotope profile from the Sujiawa section, shows a prominent negative δ13Ccarb in the basal Zhongyicun Member (N1’, −7.3‰) that most likely represents the prominent negative excursion recorded in Ediacaran-Cambrian strata across the world. REE patterns and Y/Ho ratios were used to screen samples, to ensure that the primary seawater REE features and Ce anomalies were preserved. The samples satisfying this screening process show seawater-like REE distribution patterns in leached carbonates and may have recorded Ce anomalies of the seawater from which the carbonates precipitated. These data show that the Baiyanshao Member has Ce/Ce* values between 0.57 and 0.88, the Daibu Member between 0.56 and 0.83, and the Zhongyicun Member between 0.60 and 0.96. The Ce anomalies through the section indicates that the region experienced suboxic-oxic-anoxic conditions throughout the Ediacaran-Cambrian period. Carbon isotope and trace element analyses indicate that the strata record a negative carbon isotope excursion event and anoxic conditions during the period of deposition. This study complements the carbon chemostratigraphic information and trace element data in the region and provides valuable clues for understanding the lithofacies changes through the Ediacaran and Cambrian in different regions of South China.
|
|
| 42. |
- Ye, Yin, et al.
(author)
-
Efficient and durable uranium extraction from uranium mine tailings seepage water via a photoelectrochemical method
- 2021
-
In: iScience. - : Elsevier BV. - 2589-0042. ; 24:11
-
Journal article (peer-reviewed)abstract
- Current photocatalytic uranium (U) extraction methods have intrinsic obstacles, such as the recombination of charge carriers, and the deactivation of catalysts by extracted U. Here we show that, by applying a bias potential on the photocatalyst, the photoelectrochemical (PEC) method can address these limitations. We demonstrate that, owing to efficient spatial charge-carriers separation driven by the applied bias, the PEC method enables efficient and durable U extraction. The effects of multiple operation conditions are investigated. The U extraction proceeds via single-step one-electron reduction, resulting in the formation of pentavalent U, which can facilitate future studies on this often-overlooked U species. In real seepage water the PEC method achieves an extraction capacity of 0.67 gU m(-3).h(-1) without deactivation for 156 h continuous operation, which is 17 times faster than the photocatalytic method. This work provides an alternative tool for U resource recovery and facilitates future studies on U(V) chemistry.
|
|
| 43. |
- Ye, Yin, et al.
(author)
-
Removal and recovery of aqueous U(VI) by heterogeneous photocatalysis: Progress and challenges
- 2022
-
In: Chemical Engineering Journal. - : Elsevier BV. - 1385-8947. ; 450
-
Research review (peer-reviewed)abstract
- With the rapidly expanding implementations of nuclear power technology, the contamination of the aquatic environment by uranium is a rising environmental problem. Photocatalytic reduction of hexavalent uranium (U(VI)) is a plausible solution to the aqueous uranium contamination, which has generated increasing research interest in the recent decade. Therefore, a systematic assessment highlighting the important direction for future studies is in need. We herein present a critical review to address the following two aspects: (1) the progress and current understandings of photocatalytic U(VI) removal technology, including various applied catalysts, current understanding of the kinetics and mechanisms, the effects of key operation parameters, and the effects of co-existing water constituents; (2) key knowledge gaps that need future research efforts in this field.
|
|
| 44. |
- Zhang, Xiang, et al.
(author)
-
Backward lasing of singly ionized nitrogen ions pumped by femtosecond laser pulses
- 2020
-
In: Applied Physics B: Lasers and Optics. - : Springer Science and Business Media LLC. - 0946-2171. ; 126:3
-
Journal article (peer-reviewed)abstract
- We report on the observation of backward lasing at 391.4 nm of nitrogen ions pumped by linearly polarized intense femtosecond pulses at 800 nm. The strongly enhanced spectral intensity at 391.4 nm, as well as the amplification of an externally injected backward seeding pulse, confirm that the backward 391.4 nm signal is due to optical amplification in the nitrogen gas plasma. Compared to the forward emission at 391.4 nm, the optimal backward emission is achieved at a lower gas pressure around 10 mbar, which is due to asymmetry of the backward and forward directions rooted in the traveling excitation geometry. Comparison of the signals in pure nitrogen and air revealed a strong quenching effect of the oxygen molecules, preventing backward lasing action in ambient air.
|
|
| 45. |
- Zhang, Xiao-Jie, et al.
(author)
-
Auto-suppression of Tet dioxygenases protects the mouse oocyte genome from oxidative demethylation
- 2024
-
In: Nature Structural & Molecular Biology. - : NATURE PORTFOLIO. - 1545-9993 .- 1545-9985. ; 31:1
-
Journal article (peer-reviewed)abstract
- DNA cytosine methylation plays a vital role in repressing retrotransposons, and such derepression is linked with developmental failure, tumorigenesis and aging. DNA methylation patterns are formed by precisely regulated actions of DNA methylation writers (DNA methyltransferases) and erasers (TET, ten-eleven translocation dioxygenases). However, the mechanisms underlying target-specific oxidation of 5mC by TET dioxygenases remain largely unexplored. Here we show that a large low-complexity domain (LCD), located in the catalytic part of Tet enzymes, negatively regulates the dioxygenase activity. Recombinant Tet3 lacking LCD is shown to be hyperactive in converting 5mC into oxidized species in vitro. Endogenous expression of the hyperactive Tet3 mutant in mouse oocytes results in genome-wide 5mC oxidation. Notably, the occurrence of aberrant 5mC oxidation correlates with a consequent loss of the repressive histone mark H3K9me3 at ERVK retrotransposons. The erosion of both 5mC and H3K9me3 causes ERVK derepression along with upregulation of their neighboring genes, potentially leading to the impairment of oocyte development. These findings suggest that Tet dioxygenases use an intrinsic auto-regulatory mechanism to tightly regulate their enzymatic activity, thus achieving spatiotemporal specificity of methylome reprogramming, and highlight the importance of methylome integrity for development. Here the authors show that TET dioxygenases, the erasers of DNA methylation, use a self-limiting mechanism via their LCD domain to ensure adaptable methylome status and protect the genome from excessive oxidative methylation.
|
|
| 46. |
|
|
| 47. |
- Zhang, Zhifei, et al.
(author)
-
Reconstruction of the first consumer-driven marine ecosystem on Earth, perspectives from early Cambrian small skeletal fossils from China
- 2023
-
In: Estonian journal of earth sciences. - : Estonian Academy Publishers. - 1736-4728 .- 1736-7557. ; 72:1
-
Journal article (other academic/artistic)abstract
- Biological activity was the major triggering factor driving Earth's organic and inorganic cycles across the biosphere, lithosphere, and atmosphere. A key question in the evolution of Earth's ecosystem is when and how different animals emerged and flourished and how their appearance impacted the hydrosphere-atmosphere-lithosphere cycles. The Cambrian Explosion of meta -zoans in the Ediacaran-Cambrian boundary interval resulted in sudden appearance of most of the readily fossilizable modern animal groups as macro-consumers in the Earth's oceans. This explosive radiation event led for the first time to the emergence and diversification of animals on Earth, to the establishment of complex trophic webs with animals as consumers, and marks the onset of the Phanerozoic oceanic ecosystem. Our presentation aims to discuss the at least half-billion-year-old world of tubular and conical shelled organisms (sponges, conulariids, chancelloriids, hyoliths, mollusks, tommotiids, and other lophotrochozoans) that are unseen in the present-day oceans but were recovered by us from the siliciclastic and carbonate rocks in and outside of China. Additionally, to study the body fossils of exceptionally preserved biotas (Konversat-Lagerstätten) across China, efforts are underway to understand how the early animals, notably early bilaterians, created the over 500-million-year-old oceanic ecosystems without the influence of land plants, which appeared later.
|
|
| 48. |
- Zhao, Yun, et al.
(author)
-
Precise separation of spent lithium-ion cells in water without discharging for recycling
- 2022
-
In: Energy Storage Materials. - : Elsevier. - 2405-8289 .- 2405-8297. ; 45, s. 1092-1099
-
Journal article (peer-reviewed)abstract
- New methods for recycling lithium-ion batteries (LIBs) are needed because traditional recycling methods are based on battery pulverization, which requires pre-treatment of tedious and non-eco-friendly discharging and results in low efficiency and high waste generation in post-treatment. Separating the components of recycled LIB cells followed by reuse or conversion of individual components could minimize material cross-contamination while avoiding excessive consumption of energy and chemicals. However, disposing of charged LIB cells is hazardous due to the high reactivity of lithiated graphite towards cathode materials and air, and the toxicity and flammability of the electrolytes. Here we demonstrate that the disassembly of charged jellyroll LIB cells in water with a single main step reveals no emissions from the cells and near perfect recycling efficiencies that exceed the targets of the US Department of Energy and Batteries Europe. The precise non-destructive mechanical method separates the components from jellyroll cell in water, avoiding both uncontrollable reactions from the anode and burning of the electrolyte, while allowing only a limited fraction of the anode lithium to react with water. Recycling in this way allows the recovery of materials with a value of ∼7.14 $ kg−1 cell, which is higher than that of physical separation (∼5.40 $ kg−1 cell) and much greater than the overall revenue achieved using element extraction methods (<1.00 $ kg−1 cell). The precise separation method could thus facilitate the establishment of a circular economy within the LIB industry and build a strong bridge between academia and the battery recycling industry.
|
|
| 49. |
|
|
| 50. |
|
|
