| 1. |
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| 2. |
- Ariyawansa, Hiran A., et al.
(författare)
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Fungal diversity notes 111–252—taxonomic and phylogenetic contributions to fungal taxa
- 2015
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Ingår i: Fungal diversity. - : Springer Science and Business Media LLC. - 1560-2745 .- 1878-9129. ; 75, s. 27-274
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Tidskriftsartikel (refereegranskat)abstract
- This paper is a compilation of notes on 142 fungal taxa, including five new families, 20 new genera, and 100 new species, representing a wide taxonomic and geographic range. The new families, Ascocylindricaceae, Caryosporaceae and Wicklowiaceae (Ascomycota) are introduced based on their distinct lineages and unique morphology. The new Dothideomycete genera Pseudomassariosphaeria (Amniculicolaceae), Heracleicola, Neodidymella and P s e u d o m i c ros p h a e r i o p s i s ( D id y m e l l a c e a e ) , P s e u d o p i t h o m y c e s ( D i d y m o s p h a e r i a c e a e ) , Brunneoclavispora, Neolophiostoma and Sulcosporium (Halotthiaceae), Lophiohelichrysum (Lophiostomataceae), G a l l i i c o l a , Popul o c re s c e n t i a a nd Va g i c o l a (Phaeosphaeriaceae), Ascocylindrica (Ascocylindricaceae), E l o n g a t o p e d i c e l l a t a ( R o u s s o e l l a c e a e ) , Pseudoasteromassaria (Latoruaceae) and Pseudomonodictys (Macrodiplodiopsidaceae) are introduced. The newly described species of Dothideomycetes (Ascomycota) are Pseudomassariosphaeria bromicola (Amniculicolaceae), Flammeascoma lignicola (Anteagloniaceae), Ascocylindrica marina (Ascocylindricaceae) , Lembosia xyliae (Asterinaceae), Diplodia crataegicola and Diplodia galiicola ( B o t r yosphae r i a cea e ) , Caryospor a aquat i c a (Caryosporaceae), Heracleicola premilcurensis and Neodi dymell a thai landi cum (Didymellaceae) , Pseudopithomyces palmicola (Didymosphaeriaceae), Floricola viticola (Floricolaceae), Brunneoclavispora bambusae, Neolophiostoma pigmentatum and Sulcosporium thailandica (Halotthiaceae), Pseudoasteromassaria fagi (Latoruaceae), Keissleriella dactylidicola (Lentitheciaceae), Lophiohelichrysum helichrysi (Lophiostomataceae), Aquasubmersa japonica (Lophiotremataceae) , Pseudomonodictys tectonae (Macrodiplodiopsidaceae), Microthyrium buxicola and Tumidispora shoreae (Microthyriaceae), Alloleptosphaeria clematidis, Allophaeosphaer i a c y t i s i , Allophaeosphae r i a subcylindrospora, Dematiopleospora luzulae, Entodesmium artemisiae, Galiicola pseudophaeosphaeria, Loratospora(Basidiomycota) are introduced together with a new genus Neoantrodiella (Neoantrodiellaceae), here based on both morphology coupled with molecular data. In the class Agaricomycetes, Agaricus pseudolangei, Agaricus haematinus, Agaricus atrodiscus and Agaricus exilissimus (Agaricaceae) , Amanita m e l l e i a l b a , Amanita pseudosychnopyramis and Amanita subparvipantherina (Amanitaceae), Entoloma calabrum, Cora barbulata, Dictyonema gomezianum and Inocybe granulosa (Inocybaceae), Xerocomellus sarnarii (Boletaceae), Cantharellus eucalyptorum, Cantharellus nigrescens, Cantharellus tricolor and Cantharellus variabilicolor (Cantharellaceae), Cortinarius alboamarescens, Cortinarius brunneoalbus, Cortinarius ochroamarus, Cortinarius putorius and Cortinarius seidlii (Cortinariaceae), Hymenochaete micropora and Hymenochaete subporioides (Hymenochaetaceae), Xylodon ramicida (Schizoporaceae), Colospora andalasii (Polyporaceae), Russula guangxiensis and Russula hakkae (Russulaceae), Tremella dirinariae, Tremella graphidis and Tremella pyrenulae (Tremellaceae) are introduced. Four new combinations Neoantrodiella gypsea, Neoantrodiella thujae (Neoantrodiellaceae), Punctulariopsis cremeoalbida, Punctulariopsis efibulata (Punctulariaceae) are also introduced here for the division Basidiomycota. Furthermore Absidia caatinguensis, Absidia koreana and Gongronella koreana (Cunninghamellaceae), Mortierella pisiformis and Mortierella formosana (Mortierellaceae) are newly introduced in the Zygomycota, while Neocallimastix cameroonii and Piromyces irregularis (Neocallimastigaceae) ar e i n t roduced i n the Neocallimastigomycota. Reference specimens or changes in classification and notes are provided for Alternaria ethzedia, Cucurbitaria ephedricola, Austropleospora, Austropleospora archidendri, Byssosphaeria rhodomphala, Lophiostoma caulium, Pseudopithomyces maydicus, Massariosphaeria, Neomassariosphaeria and Pestalotiopsis montellica.
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| 3. |
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| 4. |
- Brusewitz Lindahl, Bonnie, et al.
(författare)
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A thermodynamic re-assessment of Al-V toward an assessment of the ternary Al-Ti-V system
- 2015
-
Ingår i: Calphad. - : Elsevier. - 0364-5916 .- 1873-2984. ; 51, s. 75-88
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Tidskriftsartikel (refereegranskat)abstract
- Titanium alloys are highly sought after due to their excellent mechanical properties. One of the most commonly used Ti alloys is Ti-6Al-4V, which contains 6% Al and 4% V by weight. Despite the popularity of this alloy, no thermodynamic description of the ternary Al-Ti-V system has been published in the open literature. In this work an assessment procedure of the ternary Al-Ti-V system was initiated based on the binary descriptions by Witusiewitcz et al. (J. Alloys Compds. 465 (2008) 64-77 [1]) for (Al-Ti), Gong et al. (Int. J. Mater. Res. 95 (2004) 978-986 [2]) for (Al-V) and Saunders (COST 507, 2 (1998) 297-298 [3]) for (Ti-V). When combining the three binary systems and looking at the extrapolated ternary isothermal sections, it was found that there was a very large miscibility gap in the bcc phase. The origin of this miscibility gap was mainly the Al-V system and therefore it was decided to reassess this system. The Al-V system was reassessed according to available experimental data along with the enthalpies of formation of all compounds as well as the enthalpies of mixing for all terminal phases obtained by first-principles calculations based on the density functional theory. For the Al8V5 phase there are two different sets of data for the enthalpies of formation. These two sets are investigated in this work and it is found that the set not used by Gong et al. in their assessment of the Al-V binary system gives better extrapolations. The final description produced improved extrapolated ternary isothermal sections.
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| 5. |
- Cheng, Peirui, et al.
(författare)
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Highly Efficient Ruddlesden–Popper Halide Perovskite PA2MA4Pb5I16 Solar Cells
- 2018
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Ingår i: ACS Energy Letters. - : American Chemical Society (ACS). - 2380-8195. ; 3:8, s. 1975-1982
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Tidskriftsartikel (refereegranskat)abstract
- Two-dimensional (2D) Ruddlesden-Popper (RP) organic-inorganic perovskites have emerged as promising candidates for solar cells with technologically relevant stability. Herein, a new RP perovskite, the fifth member («n» = 5) of the (CH3(CH2)2NH3)2(CH3NH3)n-1PbnI3n+1 family (abbreviated as PA2MA4Pb5I16), was synthesized and systematically investigated in terms of photovoltaic application. The obtained pure PA2MA4Pb5I16 crystal exhibits a direct band gap of Eg = 1.85 eV. Systematic analysis on the solid film highlights the key role of the precursor-solvent interaction in the quantum well orientation, phase purity, grain size, surface quality, and optoelectronic properties, which can be well-tuned with addition of dimethyl sulfoxide (DMSO) into the N,N-dimethylformamide (DMF) precursor solution. These findings present opportunities for designing a high-quality RP film with well-controlled quantum well orientation, micrometer-sized grains, and optoelectronic properties. As a result, we achieved power conversion efficiency (PCE) up to 10.41%.
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| 6. |
- Liu, Jian-Kui, et al.
(författare)
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Ranking higher taxa using divergence times : a case study in Dothideomycetes
- 2017
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Ingår i: Fungal diversity. - : SPRINGER. - 1560-2745 .- 1878-9129. ; 84:1, s. 75-99
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Tidskriftsartikel (refereegranskat)abstract
- The current classification system for the recognition of taxonomic ranks among fungi, especially at high-ranking level, is subjective. With the development of molecular approaches and the availability of fossil calibration data, the use of divergence times as a universally standardized criterion for ranking taxa has now become possible. We can therefore date the origin of Ascomycota lineages by using molecular clock methods and establish the divergence times for the orders and families of Dothideomycetes. We chose Dothideomycetes, the largest class of the phylum Ascomycota, which contains 32 orders, to establish ages at which points orders have split; and Pleosporales, the largest order of Dothideomycetes with 55 families, to establish family divergence times. We have assembled a multi-gene data set (LSU, SSU, TEF1 and RPB2) from 391 taxa representing most family groups of Dothideomycetes and utilized fossil calibration points solely from within the ascomycetes and a Bayesian approach to establish divergence times of Dothideomycetes lineages. Two separated datasets were analysed: (i) 272 taxa representing 32 orders of Dothideomycetes were included for the order level analysis, and (ii) 191 taxa representing 55 families of Pleosporales were included for the family level analysis. Our results indicate that divergence times (crown age) for most orders (20 out of 32, or 63%) are between 100 and 220 Mya, while divergence times for most families (39 out of 55, or 71%) are between 20 and 100 Mya. We believe that divergence times can provide additional evidence to support establishment of higher level taxa, such as families, orders and classes. Taking advantage of this added approach, we can strive towards establishing a standardized taxonomic system both within and outside Fungi. In this study we found that molecular dating coupled with phylogenetic inferences provides no support for the taxonomic status of two currently recognized orders, namely Bezerromycetales and Wiesneriomycetales and these are treated as synonyms of Tubeufiales while Asterotexiales is treated as a synonym of Asterinales. In addition, we provide an updated phylogenetic assessment of Dothideomycetes previously published as the Families of Dothideomycetes in 2013 with a further ten orders and 35 families.
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| 7. |
- Liu, Xuan L., et al.
(författare)
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First-Principles Calculations, Experimental Study, and Thermodynamic Modeling of the Al-Co-Cr System
- 2015
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Ingår i: PLOS ONE. - : Public Library of Science (PLoS). - 1932-6203. ; 10:4
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Tidskriftsartikel (refereegranskat)abstract
- The phase relations and thermodynamic properties of the condensed Al-Co-Cr ternary alloy system are investigated using first-principles calculations based on density functional theory (DFT) and phase-equilibria experiments that led to X-ray diffraction (XRD) and electron probe micro-analysis (EPMA) measurements. A thermodynamic description is developed by means of the calculations of phase diagrams (CALPHAD) method using experimental and computational data from the present work and the literature. Emphasis is placed on modeling the bcc-A2, B2, fcc-gamma, and tetragonal-sigma phases in the temperature range of 1173 to 1623 K. Liquid, bcc-A2 and fcc-gamma phases are modeled using substitutional solution descriptions. First-principles special quasirandom structures (SQS) calculations predict a large bcc-A2 (disordered)/B2 (ordered) miscibility gap, in agreement with experiments. A partitioning model is then used for the A2/B2 phase to effectively describe the order-disorder transitions. The critically assessed thermodynamic description describes all phase equilibria data well. A2/B2 transitions are also shown to agree well with previous experimental findings.
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| 8. |
- Risal, Sanjiv, et al.
(författare)
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MASTL is essential for anaphase entry of proliferating primordial germ cells and establishment of female germ cells in mice
- 2017
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Ingår i: Cell Discovery. - : Springer Science and Business Media LLC. - 2056-5968. ; 3
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Tidskriftsartikel (refereegranskat)abstract
- In mammals, primordial germ cells (PGCs) are the embryonic cell population that serve as germ cell precursors in both females and males. During mouse embryonic development, the majority of PGCs are arrested at the G2 phase when they migrate into the hindgut at 7.75-8.75 dpc (days post coitum). It is after 9.5 dpc that the PGCs undergo proliferation with a doubling time of 12.6 h. The molecular mechanisms underlying PGC proliferation are however not well studied. In this work. Here we studied how MASTL (microtubule-associated serine/threonine kinase-like)/Greatwall kinase regulates the rapid proliferation of PGCs. We generated a mouse model where we specifically deleted Mastl in PGCs and found a significant loss of PGCs before the onset of meiosis in female PGCs. We further revealed that the deletion of Mastl in PGCs did not prevent mitotic entry, but led to a failure of the cells to proceed beyond metaphase-like stage, indicating that MASTL-mediated molecular events are indispensable for anaphase entry in PGCs. These mitotic defects further led to the death of Mastl-null PGCs by 12.5 dpc. Moreover, the defect in mitotic progression observed in the Mastl-null PGCs was rescued by simultaneous deletion of Ppp2r1a (a subunit of PP2A). Thus, our results demonstrate that MASTL, PP2A, and therefore regulated phosphatase activity have a fundamental role in establishing female germ cell population in gonads by controlling PGC proliferation during embryogenesis.
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| 9. |
- Shao, Jingchen, 1989, et al.
(författare)
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p27(KIP1) and PTEN cooperate in myeloproliferative neoplasm tumor suppression in mice
- 2016
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Ingår i: Experimental Hematolgy & Oncology. - : Springer Science and Business Media LLC. - 2162-3619. ; 5
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Tidskriftsartikel (refereegranskat)abstract
- PTEN acts as a phosphatase for PIP3 and negatively regulates the PI3K/AKT pathway, and p27(KIP1) is a cyclin-dependent kinase inhibitor that regulates the G1 to S-phase transition by binding to and regulating the activity of cyclin-dependent kinases. Genetic alterations of PTEN or CDKN1B (p27(KIP1)) are common in hematological malignancies. To better understand how mutations in these two genes might cooperate in leukemogenesis, we inactivated both genes in the hematological compartment in mice. Here, we show that the combined inactivation of Pten and Cdkn1b results in a more severe myeloproliferative neoplasm phenotype associated with lower hemoglobin, enlarged spleen and liver, and shorter lifespan compared to inactivation of Pten alone. More severe anemia and increased myeloid infiltration and destruction of the spleen contributed to the earlier death of these mice, and elevated p-AKT, cyclin D1, and cyclin D3 might contribute to the development of this phenotype. In conclusion, PTEN and p27(KIP1) cooperate in tumor suppression in the hematological compartment.
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| 10. |
- Sun, Huiliang, et al.
(författare)
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A monothiophene unit incorporating both fluoro and ester substitution enabling high-performance donor polymers for non-fullerene solar cells with 16.4% efficiency
- 2019
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Ingår i: Energy & Environmental Science. - : ROYAL SOC CHEMISTRY. - 1754-5692 .- 1754-5706. ; 12:11, s. 3328-3337
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Tidskriftsartikel (refereegranskat)abstract
- Thiophene and its derivatives have been extensively used in organic electronics, particularly in the field of polymer solar cells (PSCs). Significant research efforts have been dedicated to modifying thiophene-based units by attaching electron-donating or withdrawing groups to tune the energy levels of conjugated materials. Herein, we report the design and synthesis of a novel thiophene derivative, FE-T, featuring a monothiophene functionalized with both an electron-withdrawing fluorine atom (F) and an ester group (E). The FE-T unit possesses distinctive advantages of both F and E groups, the synergistic effects of which enable significant downshifting of the energy levels and enhanced aggregation/crystallinity of the resulting organic materials. Shown in this work are a series of polymers obtained by incorporating the FE-T unit into a PM6 polymer to fine-tune the energetics and morphology of this high-performance PSC material. The optimal polymer in the series shows a downshifted HOMO and an improved morphology, leading to a high PCE of 16.4% with a small energy loss (0.53 eV) enabled by the reduced non-radiative energy loss (0.23 eV), which are among the best values reported for non-fullerene PSCs to date. This work shows that the FE-T unit is a promising building block to construct donor polymers for high-performance organic photovoltaic cells.
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| 11. |
- Tu, Zhaowei, et al.
(författare)
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Speedy A-Cdk2 binding mediates initial telomere-nuclear envelope attachment during meiotic prophase I independent of Cdk2 activation
- 2017
-
Ingår i: Proceedings of the National Academy of Sciences of the United States of America. - : Proceedings of the National Academy of Sciences. - 0027-8424 .- 1091-6490. ; 114:3, s. 592-597
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Tidskriftsartikel (refereegranskat)abstract
- Telomere attachment to the nuclear envelope (NE) is a prerequisite for chromosomemovement duringmeiotic prophase I that is required for pairing of homologous chromosomes, synapsis, and homologous recombination. Here we show that Speedy A, a noncanonical activator of cyclin-dependent kinases (Cdks), is specifically localized to telomeres in prophase I male and female germ cells in mice, and plays an essential role in the telomere-NE attachment. Deletion of Spdya in mice disrupts telomere-NE attachment, and this impairs homologous pairing and synapsis and leads to zygotene arrest in male and female germ cells. In addition, we have identified a telomere localization domain on Speedy A covering the distal N terminus and the Cdk2-binding Ringo domain, and this domain is essential for the localization of Speedy A to telomeres. Furthermore, we found that the binding of Cdk2 to Speedy A is indispensable for Cdk2' s localization on telomeres, suggesting that Speedy A and Cdk2 might be the initial components that are recruited to the NE for forming the meiotic telomere complex. However, Speedy A-Cdk2-mediated telomere-NE attachment is independent of Cdk2 activation. Our results thus indicate that Speedy A and Cdk2 might mediate the initial telomere-NE attachment for the efficient assembly of the telomere complex that is essential for meiotic prophase I progression.
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| 12. |
- Yu, Chao, 1988, et al.
(författare)
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CFP1 Regulates Histone H3K4 Trimethylation and Developmental Potential in Mouse Oocytes
- 2017
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Ingår i: Cell Rep. - : Elsevier BV. - 2211-1247. ; 20:5, s. 1161-1172
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Tidskriftsartikel (refereegranskat)abstract
- Trimethylation of histone H3 at lysine-4 (H3K4me3) is associated with eukaryotic gene promoters and poises their transcriptional activation during development. To examine the in vivo function of H3K4me3 in the absence of DNA replication, we deleted CXXC finger protein 1 (CFP1), the DNA-binding subunit of the SETD1 histone H3K4 methyltransferase, in developing oocytes. We find that CFP1 is required for H3K4me3 accumulation and the deposition of histone variants onto chromatin during oocyte maturation. Decreased H3K4me3 in oocytes caused global downregulation of transcription activity. Oocytes lacking CFP1 failed to complete maturation and were unable to gain developmental competence after fertilization, due to defects in cytoplasmic lattice formation, meiotic division, and maternal-zygotic transition. Our study highlights the importance of H3K4me3 in continuous histone replacement for transcriptional regulation, chromatin remodeling, and normal developmental progression in a non-replicative system.
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| 13. |
- Yuan, Bo, et al.
(författare)
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Preparation and properties of porous silicon carbide based ceramic filter
- 2016
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Ingår i: Journal of Alloys and Compounds. - : Elsevier BV. - 0925-8388 .- 1873-4669. ; 684, s. 613-615
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Tidskriftsartikel (refereegranskat)abstract
- Porous silicon carbide ceramics with high open porosity and large pore size are usually applied as filters for the cleaning of hot dust gases. However, the large porosity and large pore size will decrease the mechanical properties. In the present study, porous SiC ceramics were prepared using bentonite as bonding phase. The effects of sintering temperature on the microstructure and the compressive strength were studied. Bentonite could melt and spread on the surface of silicon carbide particles at all the sintering temperatures. However, the bonding effects were very different at different temperatures.
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| 14. |
- Adhikari, Deepak, et al.
(författare)
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Inhibitory phosphorylation of Cdk1 mediates prolonged prophase I arrest in female germ cells and is essential for female reproductive lifespan
- 2016
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Ingår i: Cell Research. - : Springer Science and Business Media LLC. - 1001-0602 .- 1748-7838. ; 26, s. 1212-1225
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Tidskriftsartikel (refereegranskat)abstract
- © 2016 IBCB, SIBS, CAS. A unique feature of female germ cell development in mammals is their remarkably long arrest at the prophase of meiosis I, which lasts up to 50 years in humans. Both dormant and growing oocytes are arrested at prophase I and completely lack the ability to resume meiosis. Here, we show that the prolonged meiotic arrest of female germ cells is largely achieved via the inhibitory phosphorylation of Cdk1 (cyclin-dependent kinase 1). In two mouse models where we have introduced mutant Cdk1 T14AY15F which cannot be inhibited by phosphorylation (Cdk1AF) in small meiotically incompetent oocytes, the prophase I arrest is interrupted, leading to a premature loss of female germ cells. We show that in growing oocytes, Cdk1AF leads to premature resumption of meiosis with condensed chromosomes and germinal vesicle breakdown followed by oocyte death, whereas in dormant oocytes, Cdk1AF leads to oocyte death directly, and both situations damage the ovarian reserve that maintains the female reproductive lifespan, which should be around 1 year in mice. Furthermore, interruption of the inhibitory phosphorylation of Cdk1 results in DNA damage, which is accompanied by induction of the Chk2 (checkpoint kinase 2)-p53/p63-dependent cell death pathway, which eventually causes global oocyte death. Together, our data demonstrate that the phosphorylation-mediated suppression of Cdk1 activity is one of the crucial factors that maintain the lengthy prophase arrest in mammalian female germ cells, which is essential for preserving the germ cell pool and reproductive lifespan in female mammals.
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| 15. |
- Chauhan, S., et al.
(författare)
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Cdk2 catalytic activity is essential for meiotic cell division in vivo
- 2016
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Ingår i: Biochemical Journal. - : Portland Press Ltd.. - 0264-6021 .- 1470-8728. ; 473, s. 2783-2798
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Tidskriftsartikel (refereegranskat)abstract
- Cyclin-dependent kinases (Cdks) control the eukaryotic cell cycle by phosphorylating serine and threonine residues in key regulatory proteins, but some Cdk family members may exert kinase-independent functions that cannot easily be assessed using gene knockout approaches. While Cdk2-deficient mice display near-normal mitotic cell proliferation due to the compensatory activities of Cdk1 and Cdk4, they are unable to undergo meiotic generation of gametes and are consequently sterile. To investigate whether Cdk2 regulates meiosis via protein phosphorylation or by alternative kinase-independent mechanisms, we generated two different knockin mouse strains in which Cdk2 point mutations ablated enzyme activity without altering protein expression levels. Mice homozygous for the mutations Cdk2(D145N/D145N) or Cdk2(T160A/T160A) expressed only 'kinase-dead' variants of Cdk2 under the control of the endogenous promoter, and despite exhibiting normal expression of cell cycle regulatory proteins and complexes, both mutations rendered mice sterile. Mouse cells that expressed only 'kinase-dead' variants of Cdk2 displayed normal mitotic cell cycle progression and proliferation both in vitro and in vivo, indicating that loss of Cdk2 kinase activity exerted little effect on this mode of cell division. In contrast, the reproductive organs of Cdk2 mutant mice exhibited abnormal morphology and impaired function associated with defective meiotic cell division and inability to produce gametes. Cdk2 mutant animals were therefore comparable to gene knockout mice, which completely lack the Cdk2 protein. Together, our data indicate that the essential meiotic functions of Cdk2 depend on its kinase activity, without which the generation of haploid cells is disrupted, resulting in sterility of otherwise healthy animals.
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| 16. |
- Fallah, Mahsa, et al.
(författare)
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Plasminogen activation is required for the development of radiation-induced dermatitis
- 2018
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Ingår i: Cell Death and Disease. - : Springer. - 2041-4889. ; 9:11
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Tidskriftsartikel (refereegranskat)abstract
- Skin damage caused by radiation therapy (radiodermatitis) is a severe side effect of radiotherapy in cancer patients, and there is currently a lack of effective strategies to prevent or treat such skin damage. In this work, we show with several lines of evidence that plasminogen, a pro-inflammatory factor, is key for the development of radiodermatitis. After skin irradiation in wild type (plg+/+) mice, the plasminogen level increased in the radiated area, leading to severe skin damage such as ulcer formation. However, plasminogen-deficient (plg−/−) mice and mice lacking plasminogen activators were mostly resistant to radiodermatitis. Moreover, treatment with a plasminogen inhibitor, tranexamic acid, decreased radiodermatitis in plg+/+ mice and prevented radiodermatitis in plg+/− mice. Together with studies at the molecular level, we report that plasmin is required for the induction of inflammation after irradiation that leads to radiodermatitis, and we propose that inhibition of plasminogen activation can be a novel treatment strategy to reduce and prevent the occurrence of radiodermatitis in patients.
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| 17. |
- Gopinathan, L., et al.
(författare)
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Emi2 Is Essential for Mouse Spermatogenesis
- 2017
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Ingår i: Cell Reports. - : Elsevier BV. - 2211-1247. ; 20:3, s. 697-708
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Tidskriftsartikel (refereegranskat)abstract
- The meiotic functions of Emi2, an inhibitor of the APC/C complex, have been best characterized in oocytes where it mediates metaphase II arrest as a component of the cytostatic factor. We generated knockout mice to determine the in vivo functions of Emi2-in particular, its functions in the testis, where Emi2 is expressed at high levels. Male and female Emi2 knockout mice are viable but sterile, indicating that Emi2 is essential for meiosis but dispensable for embryonic development and mitotic cell divisions. We found that, besides regulating cell-cycle arrest in mouse eggs, Emi2 is essential for meiosis I progression in spermatocytes. In the absence of Emi2, spermatocytes arrest in early diplotene of prophase I. This arrest is associated with decreased Cdk1 activity and was partially rescued by a knockin mouse model of elevated Cdk1 activity. Additionally, we detected expression of Emi2 in spermatids and sperm, suggesting potential post-meiotic functions for Emi2.
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| 18. |
- Jayasiri, Subashini C., et al.
(författare)
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The Faces of Fungi database: fungal names linked with morphology, phylogeny and human impacts
- 2015
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Ingår i: Fungal diversity. - : Springer Science and Business Media LLC. - 1560-2745 .- 1878-9129. ; 74:1, s. 3-18
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Tidskriftsartikel (refereegranskat)abstract
- Taxonomic names are key links between various databases that store information on different organisms. Several global fungal nomenclural and taxonomic databases (notably Index Fungorum, Species Fungorum and MycoBank) can be sourced to find taxonomic details about fungi, while DNA sequence data can be sourced from NCBI, EBI and UNITE databases. Although the sequence data may be linked to a name, the quality of the metadata is variable and generally there is no corresponding link to images, descriptions or herbarium material. There is generally no way to establish the accuracy of the names in these genomic databases, other than whether the submission is from a reputable source. To tackle this problem, a new database (FacesofFungi), accessible at www.facesoffungi.org (FoF) has been established. This fungal database allows deposition of taxonomic data, phenotypic details and other useful data, which will enhance our current taxonomic understanding and ultimately enable mycologists to gain better and updated insights into the current fungal classification system. In addition, the database will also allow access to comprehensive metadata including descriptions of voucher and type specimens. This database is user-friendly, providing links and easy access between taxonomic ranks, with the classification system based primarily on molecular data (from the literature and via updated web-based phylogenetic trees), and to a lesser extent on morphological data when molecular data are unavailable. In FoF species are not only linked to the closest phylogenetic representatives, but also relevant data is provided, wherever available, on various applied aspects, such as ecological, industrial, quarantine and chemical uses. The data include the three main fungal groups (Ascomycota, Basidiomycota, Basal fungi) and fungus-like organisms. The FoF webpage is an output funded by the Mushroom Research Foundation which is an NGO with seven directors with mycological expertise. The webpage has 76 curators, and with the help of these specialists, FoF will provide an updated natural classification of the fungi, with illustrated accounts of species linked to molecular data. The present paper introduces the FoF database to the scientific community and briefly reviews some of the problems associated with classification and identification of the main fungal groups. The structure and use of the database is then explained. We would like to invite all mycologists to contribute to these web pages.
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| 19. |
- Jing, Shuping, et al.
(författare)
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Household Transmission of Human Adenovirus Type 55 in Case of Fatal Acute Respiratory Disease
- 2019
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Ingår i: Emerging Infectious Diseases. - : Centers for Disease Control and Prevention (CDC). - 1080-6040 .- 1080-6059. ; 25:9, s. 1756-1758
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Tidskriftsartikel (refereegranskat)abstract
- We identified a case of fatal acute respiratory disease from household transmission of human adenovirus type 55 (HAdV-55) in Anhui Province, China. Computed tomography showed severe pneumonia. Comparative genomic analysis of HAdV-55 indicated the virus possibly originated in Shanxi Province, China. More attention should be paid to highly contagious HAdV-55.
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| 20. |
- Koyuncu, Anil, et al.
(författare)
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iFixR : Bug Report driven Program Repair
- 2019
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Ingår i: ESEC/FSE'2019. - New York, NY, USA : ASSOC COMPUTING MACHINERY. ; , s. 314-325
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Konferensbidrag (refereegranskat)abstract
- Issue tracking systems are commonly used in modern software development for collecting feedback from users and developers. An ultimate automation target of software maintenance is then the systematization of patch generation for user-reported bugs. Although this ambition is aligned with the momentum of automated program repair, the literature has, so far, mostly focused on generate-and-validate setups where fault localization and patch generation are driven by a well-defined test suite. On the one hand, however, the common (yet strong) assumption on the existence of relevant test cases does not hold in practice for most development settings: many bugs are reported without the available test suite being able to reveal them. On the other hand, for many projects, the number of bug reports generally outstrips the resources available to triage them. Towards increasing the adoption of patch generation tools by practitioners, we investigate a new repair pipeline, iFixR, driven by bug reports: (1) bug reports are fed to an IR-based fault localizer; (2) patches are generated from fix patterns and validated via regression testing; (3) a prioritized list of generated patches is proposed to developers. We evaluate iFixR on the Defects4J dataset, which we enriched (i.e., faults are linked to bug reports) and carefully-reorganized (i.e., the timeline of test-cases is naturally split). iFixR generates genuine/plausible patches for 21/44 Defects4J faults with its IR-based fault localizer. iFixR accurately places a genuine/plausible patch among its top-5 recommendation for 8/13 of these faults (without using future test cases in generation-and-validation).
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| 21. |
- Liu, Xian-Li, et al.
(författare)
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Experimental Evaluation on Grinding Texture on Flank Face in Chamfer Milling of Stainless Steel
- 2018
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Ingår i: CHINESE JOURNAL OF MECHANICAL ENGINEERING. - : Springer. - 1000-9345 .- 2192-8258. ; 31:1
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Tidskriftsartikel (refereegranskat)abstract
- The surface quality of chamfer milling of stainless steel is closed related to the products of 3C (Computer, Communication and Consumer electronics), where a cutter is a major part to achieve that. Targeting a high-quality cutter, an experimental evaluation is carried out on the influence of grinding texture of cutter flank face on surface quality. The mathematic models of chamfer cutter are established, and they are validated by a numerical simulation. Also the grinding data are generated by the models and tested by a grinding simulation for safety reasons. Then, a set of chamfer cutting tools are machined in a five-axis CNC grinding machine, and consist of five angles between the cutting edge and the grinding texture on the 1st flank faces, i.e., 0A degrees, 15A degrees, 30A degrees, 45A degrees and 60A degrees. Furthermore, the machined cutting tools are tested in a series of milling experiments of chamfer hole of stainless steel, where cutting forces and surface morphologies are measured and observed. The results show that the best state of both surface quality and cutting force is archived by the tool with 45A degrees grinding texture, which can provide a support for manufacturing of cutting tool used in chamfer milling.
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| 22. |
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| 23. |
- Reddy, Vasudeva Reddy Minnam, et al.
(författare)
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alpha-SnSe thin film solar cells produced by selenization of magnetron sputtered tin precursors
- 2018
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Ingår i: Solar Energy Materials and Solar Cells. - : Elsevier. - 0927-0248 .- 1879-3398. ; 176, s. 251-258
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Tidskriftsartikel (refereegranskat)abstract
- The temperature-pressure-composition phase diagrams of Sn-Se system were calculated using the CALPHAD (CALculation of PHase Diagram) models. The phase diagrams showed the formation of alpha-SnSe phase at selenium-rich side with pressures lower than atmospheric pressure and in the temperature range of 300-500 degrees C. As a first step, the effect of Sn/Se ratio on the phase formation was studied experimentally by selenization of tin metal precursor films using effusion cell evaporation. The Sn/Se ratio was varied by changing the selenium weight in the range of 0.5-1.5 g. The physical properties of the films were studied with suitable characterization techniques and the obtained results showed the formation of single phase alpha-SnSe at 1.0 g of selenium. Further, alpha-SnSe/CdS interface was studied by photoelectron yield spectroscopy (PYS), which showed a 'type-I' band alignment with a valence-band offset (Delta E-v) of 1.3 eV and a conduction-band offset (Delta E-c) of 0.2 eV. Finally, alpha-SnSe solar cells with a device structure of soda-lime glass (SLG)/Mo/alpha-SnSe/CdS/i-ZnO/Al:ZnO/Ni/Ag were fabricated and a power conversation efficiency of 1.42% was achieved at 1.0 g of selenium.
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| 24. |
- Schuettpelz, Eric, et al.
(författare)
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A community-derived classification for extant lycophytes and ferns
- 2016
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Ingår i: Journal of Systematics and Evolution. - : Wiley. - 1674-4918 .- 1759-6831. ; 54:6, s. 563-603
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Tidskriftsartikel (refereegranskat)abstract
- Phylogeny has long informed pteridophyte classification. As our ability to infer evolutionary trees has improved, classifications aimed at recognizing natural groups have become increasingly predictive and stable. Here, we provide a modern, comprehensive classification for lycophytes and ferns, down to the genus level, utilizing a community-based approach. We use monophyly as the primary criterion for the recognition of taxa, but also aim to preserve existing taxa and circumscriptions that are both widely accepted and consistent with our understanding of pteridophyte phylogeny. In total, this classification treats an estimated 11 916 species in 337 genera, 51 families, 14 orders, and two classes. This classification is not intended as the final word on lycophyte and fern taxonomy, but rather a summary statement of current hypotheses, derived from the best available data and shaped by those most familiar with the plants in question. We hope that it will serve as a resource for those wanting references to the recent literature on pteridophyte phylogeny and classification, a framework for guiding future investigations, and a stimulus to further discourse.
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| 25. |
- Zhang, Hua, et al.
(författare)
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Cellular and molecular regulation of the activation of mammalian primordial follicles: somatic cells initiate follicle activation in adulthood
- 2015
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Ingår i: Human Reproduction Update. - : Oxford University Press (OUP). - 1355-4786 .- 1460-2369. ; 21:6, s. 779-786
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Tidskriftsartikel (refereegranskat)abstract
- BACKGROUND: The first small follicles to appear in the mammalian ovaries are primordial follicles. The initial pool of primordial follicles serves as the source of developing follicles and oocytes for the entire reproductive lifespan of the animal. Although the selective activation of primordial follicles is critical for female fertility, its underlying mechanisms have remained poorly understood. METHODS: A search of PubMed was conducted to identify peer-reviewed literature pertinent to the study of mammalian primordial follicle activation, especially recent reports of the role of primordial follicle granulosa cells (pfGCs) in regulating this process. RESULTS: In recent years, molecular mechanisms that regulate the activation of primordial follicles have been elucidated, mostly through the use of genetically modified mouse models. Several molecules and pathways operating in both the somatic pfGCs and oocytes, such as the phosphatidylinositol 3 kinase (PI3K) and the mechanistic target of rapamycin complex 1 (mTORC1) pathways, have been shown to be important for primordial follicle activation. More importantly, recent studies have provided an updated view of how exactly signaling pathways in pfGCs and in oocytes, such as the KIT ligand (KL) and KIT, coordinate in adult ovaries so that the activation of primordial follicles is achieved. CONCLUSIONS: In this review, we have provided an updated picture of how mammalian primordial follicles are activated. The functional roles of pfGCs in governing the activation of primordial follicles in adulthood are highlighted. The in-depth understanding of the cellular and molecular mechanisms of primordial follicle activation will hopefully lead to more treatments of female infertility, and the current progress indicates that the use of existing primordial follicles as a source for obtaining fertilizable oocytes as a new treatment for female infertility is just around the corner.
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| 26. |
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| 27. |
- Zhu, Gengzheng, et al.
(författare)
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Targeting pattern-recognition receptors to discover new small molecule immune modulators
- 2018
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Ingår i: European Journal of Medicinal Chemistry. - Issy-les-Moulineaux : Elsevier Masson. - 0223-5234 .- 1768-3254. ; 144, s. 82-92
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Tidskriftsartikel (refereegranskat)abstract
- Pattern recognition receptors (PRRs) are key immune receptors of the innate immune system, which recognize the conserved pathogen-associated molecular patterns (PAMPs) of the invading pathogens. Compared to the adaptive immune receptors, PRRs have three distinguishing features, viz., universal expression, fast response and recognizing many kinds of microbes. Toll-like receptors (TLRs), RIG-I-like receptors (RLRs), C-type lectin receptors (CLRs) and NOD-like receptors (NLRs) recognize viral nucleic acid/bacterial fragments and trigger anti-microbial innate immune responses. Upon recognition of their ligand species, PRRs recruit specific intracellular adaptor proteins to initiate signaling pathways culminating in the activation of nuclear factor-κB (NF-κB), mitogen-activated protein (MAP) kinases and interferon regulatory factors (IRFs) that control the transcription of genes encoding pro-inflammatory factors including type I interferon and other inflammatory cytokines, which are critical for eliminating the potential threat to the host. Here, we summarize the effects of small molecule regulators acting on signaling pathways initiated by TLR, RLR and NLR as well as their influence on innate and adaptive immune responses leading to therapy. © 2017 Elsevier Masson SAS
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