| 1. |
- Klionsky, Daniel J., et al.
(författare)
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Guidelines for the use and interpretation of assays for monitoring autophagy
- 2012
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Ingår i: Autophagy. - : Informa UK Limited. - 1554-8635 .- 1554-8627. ; 8:4, s. 445-544
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Forskningsöversikt (refereegranskat)abstract
- In 2008 we published the first set of guidelines for standardizing research in autophagy. Since then, research on this topic has continued to accelerate, and many new scientists have entered the field. Our knowledge base and relevant new technologies have also been expanding. Accordingly, it is important to update these guidelines for monitoring autophagy in different organisms. Various reviews have described the range of assays that have been used for this purpose. Nevertheless, there continues to be confusion regarding acceptable methods to measure autophagy, especially in multicellular eukaryotes. A key point that needs to be emphasized is that there is a difference between measurements that monitor the numbers or volume of autophagic elements (e.g., autophagosomes or autolysosomes) at any stage of the autophagic process vs. those that measure flux through the autophagy pathway (i.e., the complete process); thus, a block in macroautophagy that results in autophagosome accumulation needs to be differentiated from stimuli that result in increased autophagic activity, defined as increased autophagy induction coupled with increased delivery to, and degradation within, lysosomes (in most higher eukaryotes and some protists such as Dictyostelium) or the vacuole (in plants and fungi). In other words, it is especially important that investigators new to the field understand that the appearance of more autophagosomes does not necessarily equate with more autophagy. In fact, in many cases, autophagosomes accumulate because of a block in trafficking to lysosomes without a concomitant change in autophagosome biogenesis, whereas an increase in autolysosomes may reflect a reduction in degradative activity. Here, we present a set of guidelines for the selection and interpretation of methods for use by investigators who aim to examine macroautophagy and related processes, as well as for reviewers who need to provide realistic and reasonable critiques of papers that are focused on these processes. These guidelines are not meant to be a formulaic set of rules, because the appropriate assays depend in part on the question being asked and the system being used. In addition, we emphasize that no individual assay is guaranteed to be the most appropriate one in every situation, and we strongly recommend the use of multiple assays to monitor autophagy. In these guidelines, we consider these various methods of assessing autophagy and what information can, or cannot, be obtained from them. Finally, by discussing the merits and limits of particular autophagy assays, we hope to encourage technical innovation in the field.
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| 2. |
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| 3. |
- Da Silva Fariña, Antonio, et al.
(författare)
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XML Schema Based Fault-Set Definition to Improve Fault Injection Tools Interoperability
- 2010
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Ingår i: International Journal of Critical Computer-Based Systems. - : InderScience Publishers. - 1757-8779 .- 1757-8787. ; 1:1-3, s. 220-237
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Tidskriftsartikel (refereegranskat)abstract
- Software implemented fault injection tools (SWIFI) use fault injectors to carry out the fault injection campaign defined in a GUI-based application. However, the communication between the fault injector and the application is defined in an ad-hoc manner. This paper describes an XML schema formalisation approach for the definition of fault sets which specify low level memory and/or register value corruptions in embedded microprocessor-based systems and resource usage faults in host based systems. Through this proposed XML schema definition, different injectors could be used to carry out the same fault set injection. To validate this approach an experimental tool called Exhaustif®, consisting of a GUI Java application for defining the fault sets and injection policies, one injector for Windows hosts systems and two injectors for Sparc and i386 architectures under RTEMS have been developed.
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| 4. |
- Gracia-Marco, L, et al.
(författare)
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Bone mass and bone metabolism markers during adolescence: The HELENA Study
- 2010
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Ingår i: Hormone research in paediatrics. - : S. Karger AG. - 1663-2826 .- 1663-2818. ; 74:5, s. 339-350
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Tidskriftsartikel (refereegranskat)abstract
- <i>Background/Aims:</i> The assessment of bone mineral content (BMC) and density (BMD) status in children and adolescents is important for health and the prevention of diseases. Bone metabolic activity could provide early information on bone mass development. Our aim was to describe bone mass and metabolism markers according to age and Tanner stage in adolescents. <i>Methods:</i> Spanish adolescents (n = 345; 168 males and 177 females) aged 12.5–17.5 years participated in this cross-sectional study. Body composition variables were measured by dual-energy X-ray absorptiometry. Serum osteocalcin (n = 101), aminoterminal propeptide of type I procollagen (n = 92) and β-isomerized C-telopeptides (β-CTX, n = 65) and urine samples (β-CTX; n = 237) were analyzed by electrochemiluminescence immunoassay. <i>Results:</i> Analysis of covariance showed that females had higher values for BMC and BMD in most of the regions. Both males and females had a significant decrease in bone markers while sexual maturation increases (all p < 0.05). Males had an increased bone turnover compared to females (all p < 0.05, except for urine β-CTX in Tanner ≤IV). <i>Conclusion:</i> Our results support the evidence of dimorphic site-specific bone accretion between sexes and show an increased bone turnover in males, suggesting higher metabolic activity.
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| 7. |
- Martínez-Ortega, José-Fernán, et al.
(författare)
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Pervasive surveillance-agent system based on wireless sensor networks : design and deployment
- 2010
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Ingår i: Measurement science and technology. - : Institute of Physics Publishing (IOPP). - 0957-0233 .- 1361-6501. ; 21:12, s. Article number 124005-
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Tidskriftsartikel (refereegranskat)abstract
- Nowadays, proliferation of embedded systems is enhancing the possibilities of gathering information by using wireless sensor networks (WSNs). Flexibility and ease of installation make these kinds of pervasive networks suitable for security and surveillance environments. Moreover, the risk for humans to be exposed to these functions is minimized when using these networks. In this paper, a virtual perimeter surveillance agent, which has been designed to detect any person crossing an invisible barrier around a marked perimeter and send an alarm notification to the security staff, is presented. This agent works in a state of 'low power consumption' until there is a crossing on the perimeter. In our approach, the 'intelligence' of the agent has been distributed by using mobile nodes in order to discern the cause of the event of presence. This feature contributes to saving both processing resources and power consumption since the required code that detects presence is the only system installed. The research work described in this paper illustrates our experience in the development of a surveillance system using WNSs for a practical application as well as its evaluation in real-world deployments. This mechanism plays an important role in providing confidence in ensuring safety to our environment.
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| 8. |
- Martínez-Ortega, José-Fernán, et al.
(författare)
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Wireless sensor networks in knowledge management
- 2010
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Ingår i: Procedia Computer Science. - : Elsevier BV. - 1877-0509. ; 1:1, s. 2291-2300
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Tidskriftsartikel (refereegranskat)abstract
- Research in Wireless Sensor Networks (WSN) necessarily touches on many research topics of Computer Science, Electronic Engineering and Telecommunication, basing on the existing work in related fields. However, the peculiarity of the WSN field is the interplay and integration of these foundation subjects, yielding a distinct topic worthy of further study in its own right. One of the main open issues in WSN research is to abstract the applications of complex low-level mechanisms, and one of the most powerful and flexible ways to achieve this is creating a Middleware layer that cover all this functionality, provide services to applications, allows the intercommunication among components, adapts dynamically to different operation modes and clearly differentiated from low-level components. Knowledgemanagement and ontologies are also helpful when WSN are used to monitoring and taking decisions. We deploy a WSN in a testing scenario in order to control environmental parameters according to user profile stored in the system.
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| 10. |
- Orihuela, O, et al.
(författare)
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Effect of icodextrin on heart rate variability in diabetic patients on peritoneal dialysis
- 2014
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Ingår i: Peritoneal dialysis international : journal of the International Society for Peritoneal Dialysis. - : SAGE Publications. - 1718-4304 .- 0896-8608. ; 34:1, s. 57-63
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Tidskriftsartikel (refereegranskat)abstract
- Spectral analysis of heart rate variability is a noninvasive method for evaluating autonomic cardiovascular dysfunction under various clinical conditions, such as in dialysis patients, in whom an imbalance between the sympathetic and parasympathetic nervous system appears to be an important risk factor for sudden cardiovascular death and arrhythmia. Objective We compared the effect of icodextrin-based dialysis solution, an option that allows for better metabolic and fluid overload control, with that of glucose-based dialysis fluid on sympathetic and parasympathetic activity in the heart, as assessed by heart rate variability, in diabetic patients on peritoneal dialysis (PD). Methods This secondary analysis uses data from a randomized controlled trial in diabetic PD patients with high or high-average peritoneal transport using icodextrin-based (ICO group, n = 30) or glucose-based (GLU group, n = 29) solutions for the long dwell. All patients underwent 24-hour electrocardiographic Holter monitoring at baseline, and at 6 and 12 months of follow-up. Results We observed no significant differences between the groups in most of the variables analyzed, although values were, in general, below reference values. In the ICO group, total power and both low- and high-frequency power in normalized units increased, but the percentage of RR intervals with variation of more than 50 ms declined over time; in the GLU group, all those values declined. Plasma catecholamine levels were higher at baseline and declined over time. Conclusions These results indicate a partial recovery of sympathetic activity in the ICO group, probably because of better extracellular fluid control and lower exposure to glucose with the use of icodextrin-based dialysis solutions.
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| 12. |
- Richards, Stephen, et al.
(författare)
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Genome Sequence of the Pea Aphid Acyrthosiphon pisum
- 2010
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Ingår i: PLoS biology. - : Public Library of Science (PLoS). - 1544-9173 .- 1545-7885. ; 8:2, s. e1000313-
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Tidskriftsartikel (refereegranskat)abstract
- Aphids are important agricultural pests and also biological models for studies of insect-plant interactions, symbiosis, virus vectoring, and the developmental causes of extreme phenotypic plasticity. Here we present the 464 Mb draft genome assembly of the pea aphid Acyrthosiphon pisum. This first published whole genome sequence of a basal hemimetabolous insect provides an outgroup to the multiple published genomes of holometabolous insects. Pea aphids are host-plant specialists, they can reproduce both sexually and asexually, and they have coevolved with an obligate bacterial symbiont. Here we highlight findings from whole genome analysis that may be related to these unusual biological features. These findings include discovery of extensive gene duplication in more than 2000 gene families as well as loss of evolutionarily conserved genes. Gene family expansions relative to other published genomes include genes involved in chromatin modification, miRNA synthesis, and sugar transport. Gene losses include genes central to the IMD immune pathway, selenoprotein utilization, purine salvage, and the entire urea cycle. The pea aphid genome reveals that only a limited number of genes have been acquired from bacteria; thus the reduced gene count of Buchnera does not reflect gene transfer to the host genome. The inventory of metabolic genes in the pea aphid genome suggests that there is extensive metabolite exchange between the aphid and Buchnera, including sharing of amino acid biosynthesis between the aphid and Buchnera. The pea aphid genome provides a foundation for post-genomic studies of fundamental biological questions and applied agricultural problems.
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| 13. |
- Roelands, Marc, et al.
(författare)
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The diy smart experiences project
- 2011
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Ingår i: Architecting the Internet of Things. - Berlin, Heidelberg : Springer Berlin/Heidelberg. - 9783642191572 ; , s. 279-315
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Bokkapitel (övrigt vetenskapligt/konstnärligt)
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