| 1. |
- Boluda, C. G., et al.
(författare)
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Evaluating methodologies for species delimitation : the mismatch between phenotypes and genotypes in lichenized fungi (Bryoria sect. Implexae, Parmeliaceae)
- 2019
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Ingår i: Persoonia. - : RIJKSHERBARIUM. - 0031-5850 .- 1878-9080. ; 42, s. 75-100
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Tidskriftsartikel (refereegranskat)abstract
- In many lichen-forming fungi, molecular phylogenetic analyses lead to the discovery of cryptic species within traditional morphospecies. However, in some cases, molecular sequence data also questions the separation of phenotypically characterised species. Here we apply an integrative taxonomy approach - including morphological, chemical, molecular, and distributional characters - to re-assess species boundaries in a traditionally speciose group of hair lichens, Bryoria sect. Implexae. We sampled multilocus sequence and microsatellite data from 142 specimens from a broad intercontinental distribution. Molecular data included DNA sequences of the standard fungal markers ITS, IGS, GAPDH, two newly tested loci (FRBi15 and FRBi16), and SSR frequencies from 18 microsatellite markers. Datasets were analysed with Bayesian and maximum likelihood phylogenetic reconstruction, phenogram reconstruction, STRUCTURE Bayesian clustering, principal coordinate analysis, haplotype network, and several different species delimitation analyses (ABGD, PTP, GMYC, and DISSECT). Additionally, past population demography and divergence times are estimated. The different approaches to species recognition do not support the monophyly of the 11 currently accepted morphospecies, and rather suggest the reduction of these to four phylogenetic species. Moreover, three of these are relatively recent in origin and cryptic, including phenotypically and chemically variable specimens. Issues regarding the integration of an evolutionary perspective into taxonomic conclusions in species complexes, which have undergone recent diversification, are discussed. The four accepted species, all epitypified by sequenced material, are Bryoria fuscescens, B. glabra, B. kockiana, and B. pseudofuscescens. Ten species rank names are reduced to synonymy. In the absence of molecular data, they can be recorded as the B. fuscescens complex. Intraspecific phenotype plasticity and factors affecting the speciation of different morphospecies in this group of Bryoria are outlined.
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| 2. |
- Divakar, Pradeep K., et al.
(författare)
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Evolution of complex symbiotic relationships in a morphologically derived family of lichen-forming fungi
- 2015
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Ingår i: New Phytologist. - : Wiley. - 0028-646X .- 1469-8137. ; 208:4, s. 1217-1226
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Tidskriftsartikel (refereegranskat)abstract
- We studied the evolutionary history of the Parmeliaceae (Lecanoromycetes, Ascomycota), one of the largest families of lichen-forming fungi with complex and variable morphologies, also including several lichenicolous fungi. We assembled a six-locus data set including nuclear, mitochondrial and low-copy protein-coding genes from 293 operational taxonomic units (OTUs). The lichenicolous lifestyle originated independently three times in lichenized ancestors within Parmeliaceae, and a new generic name is introduced for one of these fungi. In all cases, the independent origins occurred c. 24 million yr ago. Further, we show that the Paleocene, Eocene and Oligocene were key periods when diversification of major lineages within Parmeliaceae occurred, with subsequent radiations occurring primarily during the Oligocene and Miocene. Our phylogenetic hypothesis supports the independent origin of lichenicolous fungi associated with climatic shifts at the Oligocene-Miocene boundary. Moreover, diversification bursts at different times may be crucial factors driving the diversification of Parmeliaceae. Additionally, our study provides novel insight into evolutionary relationships in this large and diverse family of lichen-forming ascomycetes.
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| 3. |
- Hajra, Rajkumar, et al.
(författare)
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Cometary plasma response to interplanetary corotating interaction regions during 2016 June-September : a quantitative study by the Rosetta Plasma Consortium
- 2018
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Ingår i: Monthly notices of the Royal Astronomical Society. - : Oxford University Press (OUP). - 0035-8711 .- 1365-2966. ; 480:4, s. 4544-4556
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Tidskriftsartikel (refereegranskat)abstract
- Four interplanetary corotating interaction regions (CIRs) were identified during 2016 June-September by the Rosetta Plasma Consortium (RPC) monitoring in situ the plasma environment of the comet 67P/Churyumov-Gerasimenko (67P) at heliocentric distances of similar to 3-3.8 au. The CIRs, formed in the interface region between low- and high-speed solar wind streams with speeds of similar to 320-400 km s(-1) and similar to 580-640 km s(-1), respectively, are characterized by relative increases in solar wind proton density by factors of similar to 13-29, in proton temperature by similar to 7-29, and in magnetic field by similar to 1-4 with respect to the pre-CIR values. The CIR boundaries are well defined with interplanetary discontinuities. Out of 10 discontinuities, four are determined to be forward waves and five are reverse waves, propagating at similar to 5-92 per cent of the magnetosonic speed at angles of similar to 20 degrees-87 degrees relative to ambient magnetic field. Only one is identified to be a quasi-parallel forward shock with magnetosonic Mach number of similar to 1.48 and shock normal angle of similar to 41 degrees. The cometary ionosphere response was monitored by Rosetta from cometocentric distances of similar to 4-30 km. A quiet time plasma density map was developed by considering dependences on cometary latitude, longitude, and cometocentric distance of Rosetta observations before and after each of the CIR intervals. The CIRs lead to plasma density enhancements of similar to 500-1000 per cent with respect to the quiet time reference level. Ionospheric modelling shows that increased ionization rate due to enhanced ionizing (>12-200 eV) electron impact is the prime cause of the large cometary plasma density enhancements during the CIRs. Plausible origin mechanisms of the cometary ionizing electron enhancements are discussed.
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| 4. |
- Myllys, M., et al.
(författare)
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Plasma properties of suprathermal electrons near comet 67P/Churyumov-Gerasimenko with Rosetta
- 2019
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Ingår i: Astronomy and Astrophysics. - : EDP SCIENCES S A. - 0004-6361 .- 1432-0746. ; 630
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Tidskriftsartikel (refereegranskat)abstract
- Context: The Rosetta spacecraft escorted comet 67P/Churyumov-Gerasimenko from 2014 to September 2016. The mission provided in situ observations of the cometary plasma during different phases of the cometary activity, which enabled us to better understand its evolution as a function of heliocentric distance.Aims: In this study, different electron populations, called warm and hot, observed by the Ion and Electron Sensor (IES) of the Rosetta Plasma Consortium (RPC) are investigated near the comet during the escorting phase of the Rosetta mission.Methods: The estimates for the suprathermal electron densities and temperatures were extracted using IES electron data by fitting a double-kappa function to the measured velocity distributions. The fitting results were validated using observations from other RPC instruments. We give upgraded estimates for the warm and hot population densities compared to values previously shown in literature.Results: The fitted density and temperature estimates for both electron populations seen by IES are expressed as a function of heliocentric distance to study their evolution with the cometary activity. In addition, we studied the dependence between the electron properties and cometocentric distance.Conclusions: We observed that when the neutral outgassing rate of the nucleus is high (i.e., near perihelion) the suprathermal electrons are well characterized by a double-kappa distribution. In addition, warm and hot populations show a significant dependence with the heliocentric distance. The populations become clearly denser near perihelion while their temperatures are observed to remain almost constant. Moreover, the warm electron population density is shown to be strongly dependent on the radial distance from the comet. Finally, based on our results we reject the hypothesis that hot electron population seen by IES consists of solely suprathermal (halo) solar wind electrons, while we suggest that the hot electron population mainly consists of solar wind thermal electrons that have undergone acceleration near the comet.
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