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| 2. |
- Abe, O, et al.
(författare)
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Effects of chemotherapy and hormonal therapy for early breast cancer on recurrence and 15-year survival: an overview of the randomised trials
- 2005
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Ingår i: The Lancet. - 1474-547X. ; 365:9472, s. 1687-1717
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Tidskriftsartikel (refereegranskat)abstract
- Background Quinquennial overviews (1985-2000) of the randomised trials in early breast cancer have assessed the 5-year and 10-year effects of various systemic adjuvant therapies on breast cancer recurrence and survival. Here, we report the 10-year and 15-year effects. Methods Collaborative meta-analyses were undertaken of 194 unconfounded randomised trials of adjuvant chemotherapy or hormonal therapy that began by 1995. Many trials involved CMF (cyclophosphamide, methotrexate, fluorouracil), anthracycline-based combinations such as FAC (fluorouracil, doxombicin, cyclophosphamide) or FEC (fluorouracil, epirubicin, cyclophosphamide), tamoxifen, or ovarian suppression: none involved taxanes, trastuzumab, raloxifene, or modem aromatase inhibitors. Findings Allocation to about 6 months of anthracycline-based polychemotherapy (eg, with FAC or FEC) reduces the annual breast cancer death rate by about 38% (SE 5) for women younger than 50 years of age when diagnosed and by about 20% (SE 4) for those of age 50-69 years when diagnosed, largely irrespective of the use of tamoxifen and of oestrogen receptor (ER) status, nodal status, or other tumour characteristics. Such regimens are significantly (2p=0 . 0001 for recurrence, 2p<0 . 00001 for breast cancer mortality) more effective than CMF chemotherapy. Few women of age 70 years or older entered these chemotherapy trials. For ER-positive disease only, allocation to about 5 years of adjuvant tamoxifen reduces the annual breast cancer death rate by 31% (SE 3), largely irrespective of the use of chemotherapy and of age (<50, 50-69, &GE; 70 years), progesterone receptor status, or other tumour characteristics. 5 years is significantly (2p<0 . 00001 for recurrence, 2p=0 . 01 for breast cancer mortality) more effective than just 1-2 years of tamoxifen. For ER-positive tumours, the annual breast cancer mortality rates are similar during years 0-4 and 5-14, as are the proportional reductions in them by 5 years of tamoxifen, so the cumulative reduction in mortality is more than twice as big at 15 years as at 5 years after diagnosis. These results combine six meta-analyses: anthracycline-based versus no chemotherapy (8000 women); CMF-based versus no chemotherapy (14 000); anthracycline-based versus CMF-based chemotherapy (14 000); about 5 years of tamoxifen versus none (15 000); about 1-2 years of tamoxifen versus none (33 000); and about 5 years versus 1-2 years of tamoxifen (18 000). Finally, allocation to ovarian ablation or suppression (8000 women) also significantly reduces breast cancer mortality, but appears to do so only in the absence of other systemic treatments. For middle-aged women with ER-positive disease (the commonest type of breast cancer), the breast cancer mortality rate throughout the next 15 years would be approximately halved by 6 months of anthracycline-based chemotherapy (with a combination such as FAC or FEC) followed by 5 years of adjuvant tamoxifen. For, if mortality reductions of 38% (age <50 years) and 20% (age 50-69 years) from such chemotherapy were followed by a further reduction of 31% from tamoxifen in the risks that remain, the final mortality reductions would be 57% and 45%, respectively (and, the trial results could well have been somewhat stronger if there had been full compliance with the allocated treatments). Overall survival would be comparably improved, since these treatments have relatively small effects on mortality from the aggregate of all other causes. Interpretation Some of the widely practicable adjuvant drug treatments that were being tested in the 1980s, which substantially reduced 5-year recurrence rates (but had somewhat less effect on 5-year mortality rates), also substantially reduce 15-year mortality rates. Further improvements in long-term survival could well be available from newer drugs, or better use of older drugs.
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| 4. |
- Clark, Andrew G., et al.
(författare)
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Evolution of genes and genomes on the Drosophila phylogeny
- 2007
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Ingår i: Nature. - : Springer Science and Business Media LLC. - 0028-0836 .- 1476-4687. ; 450:7167, s. 203-218
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Tidskriftsartikel (refereegranskat)abstract
- Comparative analysis of multiple genomes in a phylogenetic framework dramatically improves the precision and sensitivity of evolutionary inference, producing more robust results than single-genome analyses can provide. The genomes of 12 Drosophila species, ten of which are presented here for the first time (sechellia, simulans, yakuba, erecta, ananassae, persimilis, willistoni, mojavensis, virilis and grimshawi), illustrate how rates and patterns of sequence divergence across taxa can illuminate evolutionary processes on a genomic scale. These genome sequences augment the formidable genetic tools that have made Drosophila melanogaster a pre-eminent model for animal genetics, and will further catalyse fundamental research on mechanisms of development, cell biology, genetics, disease, neurobiology, behaviour, physiology and evolution. Despite remarkable similarities among these Drosophila species, we identified many putatively non-neutral changes in protein-coding genes, non-coding RNA genes, and cis-regulatory regions. These may prove to underlie differences in the ecology and behaviour of these diverse species.
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| 5. |
- Hibbett, D. S., et al.
(författare)
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A higher-level phylogenetic classification of the Fungi
- 2007
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Ingår i: Mycological Research. - : Elsevier BV. - 0953-7562 .- 1469-8102. ; 111, s. 509-547
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Tidskriftsartikel (refereegranskat)abstract
- A comprehensive phylogenetic classification of the kingdom Fungi is proposed, with reference to recent molecular phylogenetic analyses, and with input from diverse members of the fungal taxonomic community. The classification includes 195 taxa, down to the level of order, of which 16 are described or validated here: Dikarya subkingdom nov.; Chytridiomycota, Neocallimastigomycota phyla nov.; Monoblepharidomycetes, Neocallimastigomycetes class. nov.; Eurotiomycetidae, Lecarioromycetidae, Mycocaliciomycetidae subclass. nov.; Acarosporales, Corticiales, Baeomycetales, Candelariales, Gloeophyllales, Melanosporales, Trechisporales, Umbilicariales ords. nov. The clade containing Ascomycota and Basidiomycota is classified as subkingdom Dikarya, reflecting the putative synapomorphy of dikaryotic hyphae. The most dramatic shifts in the classification relative to previous works concern the groups that have traditionally been included in the Chytridiomycota and Zygomycota. The Chytridiomycota is retained in a restricted sense, with Blastocladiomycota and Neocallimastigomycota representing segregate phyla of flagellated Fungi. Taxa traditionally placed in Zygomycota are distributed among Glomeromycota and several subphyla incertae sedis, including Mucoromycotina, Entomophthoromycotina, Kickxellomycotina, and Zoopagomycotiria. Microsporidia are included in the Fungi, but no further subdivision of the group is proposed. Several genera of 'basal' Fungi of uncertain position are not placed in any higher taxa, including Basidiobolus, Caulochytrium, Olpidium, and Rozella. (c) 2007 The British Mycological Society. Published by Elsevier Ltd. All rights reserved.
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| 7. |
- Al-Mashikhi, S.O., et al.
(författare)
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An explanation of ‘striation free' cutting of mild steel by fibre laser
- 2009
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Ingår i: Lasers in manufacturing 2009. - Stuttgart : AT-Fachverlag.
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Konferensbidrag (refereegranskat)abstract
- This paper presents the results of an experimental and theoretical investigation into the phenomenon of ‘striation free cutting', which is a feature of fibre laser cutting of thin section mild steel. The paper concludes that the creation of very low roughness edges is related to an optimisation of the cut front geometry when the cut front is inclined at angles close to the Brewster angle for the laser - material combination. For purely geometric reasons this particular type of cut front optimisation is not possible for CO2 laser cutting of mild steel.
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| 13. |
- Hoogewijs, D., et al.
(författare)
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From critters to cancers: bridging comparative and clinical research on oxygen sensing, HIF signaling, and adaptations towards hypoxia
- 2007
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Ingår i: Integrative and Comparative Biology. - : Oxford University Press (OUP). - 1557-7023 .- 1540-7063. ; 47:4, s. 552-577
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Tidskriftsartikel (refereegranskat)abstract
- The objective of this symposium at the First International Congress of Respiratory Biology (ICRB) was to enhance communication between comparative biologists and cancer researchers working on O-2 sensing via the HIF pathway. Representatives from both camps came together on August 13-16, 2006, in Bonn, Germany, to discuss molecular adaptations that occur after cells have been challenged by a reduced (hypoxia) or completely absent (anoxia) supply of oxygen. This brief "critters-to-cancer" survey discusses current projects and new directions aimed at improving understanding of hypoxic signaling and developing therapeutic interventions.
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| 14. |
- Kaplan, Alexander, et al.
(författare)
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Cleaning oxides from metal artifacts using a frequency-doubled Nd:YAG laser
- 2006
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Ingår i: Peer reviewed conference proceedings. - Orlando, Fla. : Laser institute of America. - 0912035846 ; , s. 305-310
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Konferensbidrag (refereegranskat)abstract
- This paper presents the results of an experimental program investigating the ablation of oxides from copper alloy surfaces using a frequency doubled Nd:YAG laser. A collection of coins with similar levels of surface oxidation were cleaned using range of laser pulsing parameters on dry, wet and submerged surfaces. It was discovered that laser cleaning was always associated with one of two types of coin surface damage. At higher powers the damage took the form of surface melting and at lower powers the incident laser beam converted the original oxide layer into adherent droplets of molten metal
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| 16. |
- Koh, Y.S., et al.
(författare)
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Removal of layers of corrosion from steel surfaces : a qualitative comparison of laser methods and mechanical techniques
- 2007
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Ingår i: Journal of laser applications. - : Laser Institute of America. - 1042-346X .- 1938-1387. ; 19:2, s. 99-106
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Tidskriftsartikel (refereegranskat)abstract
- A series of steel substrates with precisely grooved surfaces were produced and subsequently corroded under controlled conditions. The oxidized surfaces were then cleaned by one of eight methods, three of which were mechanical (brushing, micro blasting with Al2O3 or glass) and five of which were laser dependent (TEA CO2 or Nd:YAG laser with or without surface water). Surface profilometry and scanning electron microscopy have been used to compare the cleaned surfaces with the original surface geometries. The relative efficacy of the eight cleaning methods has been qualitatively compared for three different types of grooved surface and three different levels of corrosion
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| 19. |
- Miao, J, et al.
(författare)
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Bile acid signaling pathways increase stability of Small Heterodimer Partner (SHP) by inhibiting ubiquitin-proteasomal degradation
- 2009
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Ingår i: Genes & development. - : Cold Spring Harbor Laboratory. - 1549-5477 .- 0890-9369. ; 23:8, s. 986-996
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Tidskriftsartikel (refereegranskat)abstract
- Small Heterodimer Partner (SHP) inhibits activities of numerous transcription factors involved in diverse biological pathways. As an important metabolic regulator, SHP plays a key role in maintaining cholesterol and bile acid homeostasis by inhibiting cholesterol conversion to bile acids. While SHP gene induction by increased bile acids is well established, whether SHP activity is also modulated remains unknown. Here, we report surprising findings that SHP is a rapidly degraded protein via the ubiquitin–proteasomal pathway and that bile acids or bile acid-induced intestinal fibroblast growth factor 19 (FGF19) increases stability of hepatic SHP by inhibiting proteasomal degradation in an extracellular signal-regulated kinase (ERK)-dependent manner. SHP was ubiquitinated at Lys122 and Lys123, and mutation of these sites altered its stability and repression activity. Tandem mass spectrometry revealed that upon bile acid treatment, SHP was phosphorylated at Ser26, within an ERK motif in SHP, and mutation of this site dramatically abolished SHP stability. Surprisingly, SHP stability was abnormally elevated in ob/ob mice and diet-induced obese mice. These results demonstrate an important role for regulation of SHP stability in bile acid signaling in normal conditions, and that abnormal stabilization of SHP may be associated with metabolic disorders, including obesity and diabetes.
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| 22. |
- Powell, John, et al.
(författare)
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Laser–oxygen cutting of mild steel: the thermodynamics of the oxidation reaction
- 2009
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Ingår i: Journal of Physics D. - : IOP Publishing. - 0022-3727 .- 1361-6463. ; 42:1
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Tidskriftsartikel (refereegranskat)abstract
- In a considerable proportion of the published work on the subject of laser-oxygen cutting of mild steel, the details of the oxidation reaction are overlooked or confused. For example, it is not uncommon for the oxidized material to be attributed with the physical characteristics of iron rather than iron oxide. Also, the fact that the oxidation reaction cannot take place above a certain temperature limit is usually overlooked. This paper presents, for the first time, an in-depth analysis of the Iron to FeO oxidation reaction in the context of laser-oxygen cutting of mild steel. The paper concludes by presenting a number of guidelines for future theoretical models.
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| 23. |
- Powell, John, et al.
(författare)
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The energy generated by the oxidation reaction during laser-oxygen cutting of mild steel
- 2008
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Ingår i: Congress proceedings. - Orlando, Fla : Laser institute of America. - 9780912035123 ; , s. 628-636
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Konferensbidrag (refereegranskat)abstract
- This paper presents an in-depth analysis of the Iron to FeO oxidation reaction in the context of laser-oxygen cutting of mild steel. The paper concludes by presenting a number of guidelines for future theoretical models of laser-oxygen cutting.
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| 25. |
- Wysocki, Laura A., et al.
(författare)
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Spatial variability in the coupling of organic carbon, nutrients, and phytoplankton pigments in surface waters and sediments of the Mississippi River plume
- 2006
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Ingår i: Estuarine, Coastal and Shelf Science. - : Elsevier BV. - 1096-0015 .- 0272-7714. ; 69:1-2, s. 47-63
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Tidskriftsartikel (refereegranskat)abstract
- River-dominated coastal areas are typically sites of active biogeochemical cycling, with productivity enhanced by terrestrial inputs of nutrients and organic matter. To examine the spatial variability and relationship between river discharge, phytoplankton, and organic carbon distributions, we analyzed surface water and sediment from the Louisiana shelf adjacent to the Mississippi River. Samples were collected during April and October 2000 to capture high and low river discharge, and were analyzed for dissolved and particulate organic carbon (DOC and POC), nutrients, and phytoplankton pigments. Pigments, determined by high performance liquid chromatography (HPLC), were also analyzed from sediment to evaluate marine carbon inputs to the seafloor. DOC in surface waters was generally within 200-300 mu M, ranging up to 399 mu M. Chlorophyll a ranged from below the limits of detection (BLD) up to 31 nM in surface waters, with higher values located further from the river mouth during high flow. Although community diversity increased during low discharge, diatoms dominated the phytoplankton population (50-80% of the community throughout the study) and consequently made more important contributions than other species to both the DOC and POC pools. Chlorophyll and degradation products (indicative of zooplankton grazing) observed in surface sediment indicated a transfer of autochthonous carbon from the highly productive photic zone to the sediment, coupling phytoplankton-derived POC in surface waters with organic carbon deposition in surface sediment. Cross-shelf changes in chlorophyll indicated a westward transport of phytoplankton that was directly and indirectly linked with river discharge and pigment decay dynamics. (c) 2006 Elsevier Ltd. All rights reserved.
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