| 1. |
- Klionsky, Daniel J., et al.
(författare)
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Guidelines for the use and interpretation of assays for monitoring autophagy
- 2012
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Ingår i: Autophagy. - : Informa UK Limited. - 1554-8635 .- 1554-8627. ; 8:4, s. 445-544
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Forskningsöversikt (refereegranskat)abstract
- In 2008 we published the first set of guidelines for standardizing research in autophagy. Since then, research on this topic has continued to accelerate, and many new scientists have entered the field. Our knowledge base and relevant new technologies have also been expanding. Accordingly, it is important to update these guidelines for monitoring autophagy in different organisms. Various reviews have described the range of assays that have been used for this purpose. Nevertheless, there continues to be confusion regarding acceptable methods to measure autophagy, especially in multicellular eukaryotes. A key point that needs to be emphasized is that there is a difference between measurements that monitor the numbers or volume of autophagic elements (e.g., autophagosomes or autolysosomes) at any stage of the autophagic process vs. those that measure flux through the autophagy pathway (i.e., the complete process); thus, a block in macroautophagy that results in autophagosome accumulation needs to be differentiated from stimuli that result in increased autophagic activity, defined as increased autophagy induction coupled with increased delivery to, and degradation within, lysosomes (in most higher eukaryotes and some protists such as Dictyostelium) or the vacuole (in plants and fungi). In other words, it is especially important that investigators new to the field understand that the appearance of more autophagosomes does not necessarily equate with more autophagy. In fact, in many cases, autophagosomes accumulate because of a block in trafficking to lysosomes without a concomitant change in autophagosome biogenesis, whereas an increase in autolysosomes may reflect a reduction in degradative activity. Here, we present a set of guidelines for the selection and interpretation of methods for use by investigators who aim to examine macroautophagy and related processes, as well as for reviewers who need to provide realistic and reasonable critiques of papers that are focused on these processes. These guidelines are not meant to be a formulaic set of rules, because the appropriate assays depend in part on the question being asked and the system being used. In addition, we emphasize that no individual assay is guaranteed to be the most appropriate one in every situation, and we strongly recommend the use of multiple assays to monitor autophagy. In these guidelines, we consider these various methods of assessing autophagy and what information can, or cannot, be obtained from them. Finally, by discussing the merits and limits of particular autophagy assays, we hope to encourage technical innovation in the field.
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| 2. |
- Kanungo, J, et al.
(författare)
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Surface treatment of nanoporous silicon with noble metal ions and characterizations
- 2010
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Ingår i: APPLIED SURFACE SCIENCE. - : Elsevier Science B.V., Amsterdam.. - 0169-4332. ; 256:13, s. 4231-4240
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Tidskriftsartikel (refereegranskat)abstract
- A very large surface to volume ratio of nanoporous silicon (PS) produces a high density of surface states, which are responsible for uncontrolled oxidation of the PS surface. Hence it disturbs the stability of the material and also creates difficulties in the formation of a reliable electrical contact. To passivate the surface states of the nanoporous silicon, noble metals (Pd, Ru, and Pt) were dispersed on the PS surface by an electroless chemical method. GIXRD (glancing incidence X-ray diffraction) proved the crystallinity of PS and the presence of noble metals on its surface. While FESEM (field emission scanning electron microscopy) showed the morphology, the EDX (energy dispersive X-ray) line scans and digital X-ray image mapping indicated the formation of the noble metal islands on the PS surface. Dynamic SIMS (secondary ion mass spectroscopy) further confirmed the presence of noble metals and other impurities near the surface of the modified PS. The variation of the surface roughness after the noble metal modification was exhibited by AFM (atomic force microscopy). The formation of a thin oxide layer on the modified PS surface was verified by XPS (X-ray photoelectron spectroscopy).
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| 3. |
- Araujo, Carlos Moyses, et al.
(författare)
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Disorder-induced Room Temperature Ferromagnetism in Glassy Chromites
- 2014
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Ingår i: Scientific Reports. - : Springer Science and Business Media LLC. - 2045-2322. ; 4, s. 4686-
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Tidskriftsartikel (refereegranskat)abstract
- We report an unusual robust ferromagnetic order above room temperature upon amorphization of perovskite [YCrO3] in pulsed laser deposited thin films. This is contrary to the usual expected formation of a spin glass magnetic state in the resulting disordered structure. To understand the underlying physics of this phenomenon, we combine advanced spectroscopic techniques and first-principles calculations. We find that the observed order-disorder transformation is accompanied by an insulator-metal transition arising from a wide distribution of Cr-O-Cr bond angles and the consequent metallization through free carriers. Similar results also found in YbCrO3-films suggest that the observed phenomenon is more general and should, in principle, apply to a wider range of oxide systems. The ability to tailor ferromagnetic order above room temperature in oxide materials opens up many possibilities for novel technological applications of this counter intuitive effect.
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| 4. |
- Wai, K. T., et al.
(författare)
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Estimating dengue vector abundance in the wet and dry season: implications for targeted vector control in urban and peri-urban Asia
- 2012
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Ingår i: Pathogens and Global Health. - : Informa UK Limited. - 2047-7724 .- 2047-7732. ; 106:8, s. 436-445
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Tidskriftsartikel (refereegranskat)abstract
- Background: Research has shown that the classical Stegomyia indices (or "larval indices'') of the dengue vector Aedes aegypti reflect the absence or presence of the vector but do not provide accurate measures of adult mosquito density. In contrast, pupal indices as collected in pupal productivity surveys are a much better proxy indicator for adult vector abundance. However, it is unknown when it is most optimal to conduct pupal productivity surveys, in the wet or in the dry season or in both, to inform control services about the most productive water container types and if this pattern varies among different ecological settings. Methods: A multi-country study in randomly selected twelve to twenty urban and peri-urban neighborhoods ("clusters'') of six Asian countries, in which all water holding containers were examined for larvae and pupae of Aedes aegypti during the dry season and the wet season and their productivity was characterized by water container types. In addition, meteorological data and information on reported dengue cases were collected. Findings: The study reconfirmed the association between rainfall and dengue cases ("dengue season'') and underlined the importance of determining through pupal productivity surveys the "most productive containers types'', responsible for the majority (> 70%) of adult dengue vectors. The variety of productive container types was greater during the wet than during the dry season, but included practically all container types productive in the dry season. Container types producing pupae were usually different from those infested by larvae indicating that containers with larval infestations do not necessarily foster pupal development and thus the production of adult Aedes mosquitoes. Conclusion: Pupal productivity surveys conducted during the wet season will identify almost all of the most productive container types for both the dry and wet seasons and will therefore facilitate cost-effective targeted interventions.
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| 5. |
- Jayakumar, O. D., et al.
(författare)
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Enhancement of ferromagnetic properties in Zn0.95Co0.05O nanoparticles by indium codoping : An experimental and theoretical study
- 2010
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Ingår i: Applied Physics Letters. - : AIP Publishing. - 0003-6951 .- 1077-3118. ; 97:23, s. 232510-
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Tidskriftsartikel (refereegranskat)abstract
- Nanoparticles of Zn0.95-xCo0.05InxO (x = 0.0 to 0.07) were synthesized by the pyrolitic reaction of sol-gels obtained from respective metal precursors. X-ray diffraction and high-resolution transmission electron microscopy studies confirm the formation of impurity-free wurtzite type ZnO structure for all the compositions. While pristine ZnO is diamagnetic, Zn0.95Co0.05O nanoparticles show weak paramagnetic behavior at room temperature. When "In." is codoped with Co with x = 0.0 to 0.07 in Zn0.95-xCo0.05InxO, a systematic increase in magnetic moment is observed up to x = 0.07. First-principles modeling supports that the ferromagnetic phase become more favorable at higher indium doping concentrations.
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| 6. |
- Jayakumar, O. D., et al.
(författare)
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Experimental and theoretical investigations of dopant, defect, and morphology control on the magnetic and optical properties of transition metal doped ZnO nanoparticles
- 2014
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Ingår i: Springer Series in Materials Science. - New Delhi : Springer Nature. - 0933-033X. ; 180, s. 341-370
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Tidskriftsartikel (refereegranskat)abstract
- The control of size, shape, and physical properties by surface modifications are of immense interest in materials which are of technological importance. The ZnO-based wide bandgap semiconductor nanoparticles have gained significant interest in the research community due to its large exciton binding energy (60 meV). Further substantial renewed interest in ZnO-based compounds is due to the possible realization of p-type conduction and ferromagnetic behavior when doped with transition metals. In this report we present interesting results on the ZnO nanoparticle system in which the control of dopants, morphology, and the surface modification can influence significantly the physical properties of the ZnO nanoparticles. First, we present the methods to control the morphology of the ZnO particle to obtain nanorods. As an example we show the effect of Li dopant on the morphology control of Co and Ni doped ZnO. The effect of morphology on the magnetic properties of these compounds is discussed further. We also demonstrate the effect of the n-type charge carriers on the magnetic and optical properties by doping aliovalent cations in Zn(Co)O. Following this we comment on the magnetic property manipulations by surfactant treatment of transition metal (TM) doped ZnO and defect stabilization in ZnO by Mg doping. The magnetic coupling is RKKY-like both with and without Li co-doping. Finally, we provide the significant implications of these results on the nanorods structures of room temperature ferromagnetic materials by first-principles modeling. These theoretical analyses demonstrate that Li co-doping has primarily two effects in bulk Zn1-xMxO (with M = Co or Ni). First, the Li-on-Zn acceptors increase the local magnetic moment by depopulating the M 3d minority spin-states. Second, Li-on- Zn prefer to be closer to the M atoms to compensate the M-O bonds and to locally depopulate the 3d states, and this will help in forming high aspect nanostructures. The observed room temperature ferromagnetism in Li co-doped Zn1-xMxO nanorods can therefore be explained by the better rod morphology in combination with locally ionizing the magnetic M atoms.
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| 7. |
- Jayakumar, O. D., et al.
(författare)
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Experimental and theoretical investigations on magnetic behavior of (Al,Co) co-doped ZnO nanoparticles
- 2010
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Ingår i: Nanoscale. - : Royal Society of Chemistry (RSC). - 2040-3364 .- 2040-3372. ; 2:8, s. 1505-1511
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Tidskriftsartikel (refereegranskat)abstract
- We present the structural and magnetic properties of Zn0.95-xCo0.05AlxO (x = 0.0 to 0.1) nanoparticles, synthesized by a novel sol-gel route followed by pyrolysis. Powder X-ray diffraction data confirms the formation of a single phase wurtzite type ZnO structure for all the compositions. The Zn0.95Co0.05O nanoparticles show diamagnetic behavior at room temperature. However, when Al is co-doped with Co with x = 0.0 to 0.10 in Zn0.95-xCo0.05AlxO, a systematic increase in ferromagnetic moment is observed up to x = 0.07 at 300 K. Above x = 0.07 (e.g. for x = 0.10) a drastic decrease in ferromagnetic nature is observed which is concomitant with the segregation of poorly crystalline Al rich ZnO phase as evidenced from TEM studies. Theoretical studies using density functional calculations on Zn0.95-xCo0.05AlxO suggest that the partial occupancy of S2 states leads to an increased double exchange interaction favoring the ferromagnetic ground states. Such ferromagnetic interactions are favorable beyond a threshold limit. At a high level doping of Al, the exchange splitting is reduced, which suppresses the ferromagnetic ordering.
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| 8. |
- Jayakumar, O. D., et al.
(författare)
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Tunable Ferromagnetism accompanied by Morphology Control in Li-doped Zn0.97Ni0.03O
- 2010
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Ingår i: The Journal of Physical Chemistry C. - : American Chemical Society (ACS). - 1932-7447 .- 1932-7455. ; 114:41, s. 17428-17433
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Tidskriftsartikel (refereegranskat)abstract
- We report morphological and ferromagnetic property control in ZnO nanorod structures by an optimum doping of Ni and Li. Nanostructures of Zn0.97-xNi0.03LixO (x = 0, 0.03, 0.05, 0.08, and 0.10) are prepared by a solvothermal method. High aspect ratio (5-15) ZnO nanorods transform to particles (with 1-3 aspect ratio) influenced by 3 at. % Ni substitution in ZnO (Zn0.97Ni0.03O). It is remarkable to note that the Zn1.97Ni0.03O particles completely retain the nanorod shape with significantly increased aspect ratio (15-30) when 3 at.c/a Li ions are codoped in (Zn0.99Li0.03Ni0.30O). Li substitution tits enhances ferromagnetism with largest magnetization (0.8 emu.g(-1)) observed for Zn0.94Li0.03Ni0.03O. For Li concentration >3 at.%, the aspect ratio as well as the magnetization decreased considerably. These experimental observations are explained by first-principles modeling. At low Li-on-Zn acceptor concentrations, the total magnetization is increased by lower Ni d-state populations, whereas at higher Li concentrations the population of ZnO host states decreases the ferromagnetism by induced magnetic moments on the oxygens. We discuss the significant implications of these results on the nanorods structures of room temperature ferromagnetic materials, which are expected to play pivotal role in developing spintronic devices.
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| 9. |
- Persson, Clas, et al.
(författare)
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Morphology and Magnetic Coupling in ZnO:Co and ZnO:Ni Co-Doped with Li
- 2011
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Ingår i: Acta Physica Polonica. A. - 0587-4246 .- 1898-794X. ; 119:2, s. 95-98
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Tidskriftsartikel (refereegranskat)abstract
- Zn0.95Co0.05O and Zn0.97Ni0.03O nanorods, prepared by a solvothermal method, show intriguing morphology and magnetic properties when co-doped with Li. At low and moderate Li incorporation (below 10 and 3 at.% Li in the Co- and Ni-doped samples, respectively) the rod aspect ratio is increased and room temperature ferromagnetic properties are enhanced, whereas the ferromagnetic coupling in Zn0.97Ni0.03O is decreased for Li concentrations > 3 at.%. First-principles theoretical analyses demonstrate that Li co-doping has primarily two effect 3 in bulk Zn1-xMxO (with M = Co or Ni). First, the Li-on-Zn acceptors increase the local magnetic moment by depopulating the M 3d minority spin-states. The magnetic coupling is Ruderman-Kittel-Kasuya-Yosida-like both without and with Li co-doping. Second, Li-on-Zn prefer to be close to the M atoms to compensate the M-O bonds and to locally depopulate the 3d states, and this will help forming high aspect nanostructures. The observed room temperature ferromagnetism in Li co-doped Zn1-xMxO nanorods can therefore be explained by the better rod morphology in combination with ionizing the magnetic M atoms.
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| 10. |
- Tyagi, Bhishma, et al.
(författare)
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Surface Energy Exchanges during Pre-monsoon Thunderstorm Activity over a Tropical Station Kharagpur
- 2014
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Ingår i: Pure and Applied Geophysics. - : Springer Science and Business Media LLC. - 0033-4553 .- 1420-9136. ; 171:7, s. 1445-1459
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Tidskriftsartikel (refereegranskat)abstract
- In the present study an attempt has been made to understand the variation of surface energy fluxes such as net radiation, sensible, latent and soil heat during different epochs of thunderstorm activity at Kharagpur. The study also focuses in delineating the difference in the surface energy budget from the days of thunderstorm activity to fair weather days in the pre-monsoon months (April and May) which is locally known as thunderstorm season. For this purpose, experimental data obtained from the Severe Thunderstorms- Observations and Regional Modeling (STORM) programme during pre-monsoon months of 2007, 2009 and 2010 at Kharagpur (22A degrees 30'N, 87A degrees 20'E), West Bengal, India are used. The present study reveals quick response, in the order of a few days, in the variations of transport of energy fluxes at soil-atmosphere interface to the upper atmosphere vis-A -vis to the occurrence of thunderstorm activity. Rise of surface sensible heat flux to the level of surface latent heat flux a day or two before the occurrence of a thunderstorm has been identified as a precursor signal for the thunderstorm occurrence over Kharagpur. Distinguishable differences are found in the partitioning of the surface energy fluxes to that of net radiation between thunderstorm and non-thunderstorm days. The present study reveals more Bowen's ratio during thunderstorm days to that of nonthunderstorm days. These results are useful in validating mesoscale model simulations of thunderstorm activity.
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