| 1. |
- Ning, Yujie, et al.
(författare)
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Genetic Variants and Protein Alterations of Selenium- and T-2 Toxin-Responsive Genes Are Associated With Chondrocytic Damage in Endemic Osteoarthropathy
- 2022
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Ingår i: Frontiers in Genetics. - : Frontiers Media S.A.. - 1664-8021. ; 12
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Tidskriftsartikel (refereegranskat)abstract
- The mechanism of environmental factors in Kashin-Beck disease (KBD) remains unknown. We aimed to identify single nucleotide polymorphisms (SNPs) and protein alterations of selenium- and T-2 toxin-responsive genes to provide new evidence of chondrocytic damage in KBD. This study sampled the cubital venous blood of 258 subjects including 129 sex-matched KBD patients and 129 healthy controls for SNP detection. We applied an additive model, a dominant model, and a recessive model to identify significant SNPs. We then used the Comparative Toxicogenomics Database (CTD) to select selenium- and T-2 toxin-responsive genes with the candidate SNP loci. Finally, immunohistochemistry was applied to verify the protein expression of candidate genes in knee cartilage obtained from 15 subjects including 5 KBD, 5 osteoarthritis (OA), and 5 healthy controls. Forty-nine SNPs were genotyped in the current study. The C allele of rs6494629 was less frequent in KBD than in the controls (OR = 0.63, p = 0.011). Based on the CTD database, PPARG, ADAM12, IL6, SMAD3, and TIMP2 were identified to interact with selenium, sodium selenite, and T-2 toxin. KBD was found to be significantly associated with rs12629751 of PPARG (additive model: OR = 0.46, p = 0.012; dominant model: OR = 0.45, p = 0.049; recessive model: OR = 0.18, p = 0.018), rs1871054 of ADAM12 (dominant model: OR = 2.19, p = 0.022), rs1800796 of IL6 (dominant model: OR = 0.30, p = 0.003), rs6494629 of SMAD3 (additive model: OR = 0.65, p = 0.019; dominant model: OR = 0.52, p = 0.012), and rs4789936 of TIMP2 (recessive model: OR = 5.90, p = 0.024). Immunohistochemistry verified significantly upregulated PPARG, ADAM12, SMAD3, and TIMP2 in KBD compared with OA and normal controls (p < 0.05). Genetic polymorphisms of PPARG, ADAM12, SMAD3, and TIMP2 may contribute to the risk of KBD. These genes could promote the pathogenesis of KBD by disturbing ECM homeostasis.
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| 2. |
- Liu, Huan, et al.
(författare)
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The first human induced pluripotent stem cell line of Kashin–Beck disease reveals involvement of heparan sulfate proteoglycan biosynthesis and PPAR pathway
- 2022
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Ingår i: The FEBS Journal. - : John Wiley & Sons. - 1742-464X .- 1742-4658. ; 289:1, s. 279-293
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Tidskriftsartikel (refereegranskat)abstract
- OBJECTIVE: Kashin-Beck disease (KBD) is an endemic osteochondropathy. Due to a lack of suitable animal or cellular disease models, the research progress on KBD has been limited. Our goal was to establish the first disease-specific human induced pluripotent stem cells (hiPSCs) cellular disease model of KBD, and to explore its etiology and pathogenesis exploiting transcriptome sequencing.METHODS: HiPSCs were reprogrammed from dermal fibroblasts of two KBD and one healthy control donors via integration-free vectors. Subsequently, hiPSCs were differentiated into chondrocytes through three-week culture. Gene expression profiles in KBD, normal primary chondrocytes and hiPSC-derived chondrocytes were defined by RNA sequencing. A Venn diagram was constructed to show the number of shared differentially expressed genes (DEGs) between KBD and normal. Gene oncology and Kyoto Encyclopedia of Genes and Genomes annotations were performed, and six DEGs were further validated in other individuals by real-time quantitative reverse transcription PCR (RT-qPCR).RESULTS: KBD cellular disease models were successfully established by generation of hiPSC lines. Seventeen consistent and significant DEGs present in all compared groups (KBD and normal) were identified. RT-qPCR validation gave consistent results with the sequencing data. Glycosaminoglycan biosynthesis-heparan sulfate/heparin, PPAR signaling pathway and cell adhesion molecules (CAMs) pathways were identified to be significantly altered in KBD.CONCLUSION: Differentiated chondrocytes deriving from KBD-origin hiPSCs provide the first cellular disease model for etiological studies of KBD. This study also provides new sights into the pathogenesis and etiology of KBD and is likely to inform the development of targeted therapeutics for its treatment.
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| 3. |
- Feng, Xingxing, et al.
(författare)
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Human recognition with the optoelectronic reservoir-computing-based micro-Doppler radar signal processing
- 2022
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Ingår i: Applied Optics. - : Optica Publishing Group (formerly OSA). - 1559-128X .- 2155-3165. ; 61:19, s. 5782-5789
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Tidskriftsartikel (refereegranskat)abstract
- Current perception and monitoring systems, such as human recognition, are affected by several environmental factors, such as limited light intensity, weather changes, occlusion of targets, and public privacy. Human recognition using radar signals is a promising direction to overcome these defects; however, the low signal-to-noise ratio of radar signals still makes this task challenging. Therefore, it is necessary to use suitable tools that can efficiently deal with radar signals to identify targets. Reservoir computing (RC) is an efficient machine learning scheme that is easy to train and demonstrates excellent performance in processing complex time-series signals. The RC hardware implementation structure based on nonlinear nodes and delay feedback loops endows it with the potential for real-time fast signal processing. In this paper, we numerically study the performance of the optoelectronic RC composed of optical and electrical components in the task of human recognition with noisy micro-Doppler radar signals. A single-loop optoelectronic RC is employed to verify the application of RC in this field, and a parallel dual-loop optoelectronic RC scheme with a dual-polarization Mach–Zehnder modulator (DPol-MZM) is also used for performance comparison. The result is verified to be comparable with other machine learning tools, which demonstrates the ability of the optoelectronic RC in capturing gait information and dealing with noisy radar signals; it also indicates that optoelectronic RC is a powerful tool in the field of human target recognition based on micro-Doppler radar signals.
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| 4. |
- He, Yunfei, et al.
(författare)
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Sulfated complex metal oxides solid acids with dual Brønsted-Lewis acidic property for production of 5-ethoxymethylfurfural from biomass-derived carbohydrates
- 2022
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Ingår i: Chemical Engineering Journal. - : Elsevier BV. - 1385-8947. ; 429
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Tidskriftsartikel (refereegranskat)abstract
- The transformation of aldose-based carbohydrates into 5-ethoxymethylfurfural (EMF) is very challenging as compared to ketose-based carbohydrates, but the formers are more abundant and cheaper. Here, a series of sulfated complex metal oxides were synthesized for the conversion of aldose-based mono-, di-, and poly-saccharides, as well as starchy food waste into EMF. The catalysts were carefully characterized and the results showed that the type and strength of the acid sites were more important than their concentration. It was also shown that the efficiency of these catalysts was significantly affected by the metal species in the catalyst composition and followed the order tetra- > tri- > bi- > mono-component metal oxides based catalyst. Among the prepared catalysts, Zr-Sn-Fe-Al-O-S exhibited superior catalytic activity, with an EMF yield of 33.1% from glucose, and yields ranging from 4.1−26.3% for di-, poly-saccharides and starchy food waste in ethanol/dimethyl sulfoxide solvent system under glucose/catalyst mass ratio of 4. The role of co-solvent in the reaction pathway was also studied. It was found that the predominant reaction pathway for EMF production was closely related to the co-solvent amount. A kinetic model of glucose conversion to EMF was developed and the thermodynamic analysis was performed, the main features of the experimental observations can be described by the model. Zr-Sn-Fe-Al-O-S was reused for four runs without intermediate regeneration steps, showing a slight decay in activity. After reactivation by calcination before the fifth cycle, the catalyst recovered its activity, indicating good reusability and thermal stability.
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| 5. |
- Ning, Yujie, et al.
(författare)
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Comparative analysis of the gut microbiota composition between knee osteoarthritis and Kashin-Beck disease in Northwest China
- 2022
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Ingår i: Arthritis Research & Therapy. - : BioMed Central. - 1478-6362. ; 24:1
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Tidskriftsartikel (refereegranskat)abstract
- Background: Osteoarthritis (OA) and Kashin-Beck disease (KBD) both are two severe osteochondral disorders. In this study, we aimed to compare the gut microbiota structure between OA and KBD patients.Methods: Fecal samples collected from OA and KBD patients were used to characterize the gut microbiota using 16S rDNA gene sequencing. To identify whether gut microbial changes at the species level are associated with the genes or functions of the gut bacteria between OA and KBD groups, metagenomic sequencing of fecal samples from OA and KBD subjects was performed.Results: The OA group was characterized by elevated Epsilonbacteraeota and Firmicutes levels. A total of 52 genera were identified to be significantly differentially abundant between the two groups. The genera Raoultella, Citrobacter, Flavonifractor, g__Lachnospiraceae_UCG-004, and Burkholderia-Caballeronia-Paraburkholderia were more abundant in the OA group. The KBD group was characterized by higher Prevotella_9, Lactobacillus, Coprococcus_2, Senegalimassilia, and Holdemanella. The metagenomic sequencing showed that the Subdoligranulum_sp._APC924/74, Streptococcus_parasanguinis, and Streptococcus_salivarius were significantly increased in abundance in the OA group compared to those in the KBD group, and the species Prevotella_copri, Prevotella_sp._CAG:386, and Prevotella_stercorea were significantly decreased in abundance in the OA group compared to those in the KBD group by using metagenomic sequencing.Conclusion: Our study provides a comprehensive landscape of the gut microbiota between OA and KBD patients and provides clues for better understanding the mechanisms underlying the pathogenesis of OA and KBD.
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| 6. |
- Shen, Tangyao, et al.
(författare)
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Giant magneto field effect in up-conversion amplified spontaneous emission via spatially extended states in organic-inorganic hybrid perovskites
- 2022
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Ingår i: Opto-Electronic Advances. - : Editorial Office of Opto-Electronic Advances. - 2096-4579. ; 5:2
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Tidskriftsartikel (refereegranskat)abstract
- Up-conversion lasing actions are normally difficult to realize in light-emitting materials due to small multi-photon absorption cross section and fast dephasing of excited states during multi-photon excitation. This paper reports an easily accessible up-conversion amplified spontaneous emission (ASE) in organic-inorganic hybrid perovskites (MAPbBr(3)) films by optically exciting broad gap states with sub-bandgap laser excitation. The broad absorption was optimized by adjusting the grain sizes in the MAPbBr3 films. At low sub-bandgap pumping intensities, directly exciting the gap states leads to 2-photon, 3-photon, and 4-photon up-conversion spontaneous emission, revealing a large optical cross section of multiphoton excitation occurring in such hybrid perovskite films. At moderate pumping intensity (1.19 mJ/cm(2)) of 700 nm laser excitation, a significant spectral narrowing phenomenon was observed with the full width at half maximum (FWHM) decreasing from 18 nm to 4 nm at the peak wavelength of 550 nm, simultaneously with a nonlinear increase on spectral peak intensity, showing an up-conversion ASE realized at low threshold pumping fluence. More interestingly, the up-conversion ASE demonstrated a giant magnetic field effect, leading to a magneto-ASE reaching 120%. In contrast, the upconversion photoluminescence (PL) showed a negligible magnetic field effect (< 1%). This observation provides an evidence to indicate that the light-emitting states responsible for up-conversion ASE are essentially formed as spatially extended states. The angular dependent spectrum results further verify the existence of spatially extended states which are polarized to develop coherent in-phase interaction. Clearly, using broad gap states with spatially extended light-emitting states presents a new approach to develop up-conversion ASE in organic-inorganic hybrid perovskites.
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| 7. |
- Ye, Kangpeng, et al.
(författare)
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Human Identification by Mean of Optoelectronic Reservoir Computing
- 2022
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Ingår i: 13TH INTERNATIONAL PHOTONICS AND OPTOELECTRONICS MEETINGS (POEM 2021). - : SPIE-Intl Soc Optical Eng.
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Konferensbidrag (refereegranskat)abstract
- As an improvement of the traditional recurrent neural networks (RNN), the reservoir computing (RC) only needs to train one output connection weight matrix linearly, which greatly reduces the number of machine learning network calculations. The optoelectronic RC can be realized with a delay feedback loop composed of optical and electrical devices. It has the advantages of lower power consumption and faster speed than the all-electric RC scheme. At the same time, it is easier to be controlled than the all-optical RC scheme. In this paper, we propose to employ the optoelectronic RC to process radar signals to distinguish different persons in the indoor environment. The radar signal required for the simulation is referred from the IDRad data set, which contains the echo signals of the frequency modulated continuous wave (FMCW) radar, and five persons of different ages are free to move around in the room, which is close to the real scene. First, the echo signal is processed and the micro-Doppler features are extracted, and each frame corresponds to a row vector. Then, this vector is used as the input signal of the optoelectronic RC. We numerically studied the impact of parameters such as the size of the RC and the regularization coefficient in the system. Finally, the classification accuracy of five targets reaches 87%.
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