| 1. |
- Andersson, Magnus, et al.
(författare)
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Physical Properties of Biopolymers Assessed by Optical Tweezers : Analysis of folding and refolding of bacterial pili
- 2008
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Ingår i: ChemPhysChem. - : Wiley-VCH Verlagsgesellschaft. - 1439-4235 .- 1439-7641. ; 9:2, s. 221-235
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Tidskriftsartikel (refereegranskat)abstract
- Bacterial adhesion to surfaces mediated by specific adhesion organelles that promote infections, as exemplified by the pili of uropathogenic E. coli, is studied mostly at the level of cell-cell interactions and thereby reflects the averaged behavior of multiple pili. The role of pilus rod structure has therefore only been estimated from the outcome of experiments involving large numbers of organelles at the same time. It has, however, lately become clear that the biomechanical behavior of the pilus shafts play an important, albeit hitherto rather unrecognized, role in the adhesion process. For example, it has been observed that shafts from two different strains, even though they are similar in structure, result in large differences in the ability of the bacteria to adhere to their host tissue. However, in order to identify all properties of pilus structures that are of importance in the adhesion process, the biomechanical properties of pili must be assessed at the single-molecule level. Due to the low range of forces of these structures, until recently it was not possible to obtain such information. However, with the development of force-measuring optical tweezers (FMOT) with force resolution in the low piconewton range, it has lately become possible to assess forces mediated by individual pili on single living bacteria in real time. FMOT allows for a more or less detailed mapping of the biomechanical properties of individual pilus shafts, in particular those that are associated with their elongation and contraction under stress. This Mi- nireview presents the FMOT technique, the biological model system, and results from assessment of the biomechanical properties of bacterial pili. The information retrieved is also compared with that obtained by atomic force microscopy.
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| 2. |
- Axner, Ove, 1957-, et al.
(författare)
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Assessing bacterial adhesion on an individual adhesin and single pili level using optical tweezers
- 2011
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Ingår i: Bacterial adhesion. - Berlin : Springer Berlin/Heidelberg. ; , s. 301-313
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Bokkapitel (refereegranskat)abstract
- Optical tweezers (OT) are a technique that, by focused laser light, can both manipulate micrometer sized objects and measure minute forces (in the pN range) in biological systems. The technique is therefore suitable for assessment of bacterial adhesion on an individual adhesin-receptor and single attachment organelle (pili) level. This chapter summarizes the use of OT for assessment of adhesion mechanisms of both non-piliated and piliated bacteria. The latter include the important helix-like pili expressed by uropathogenic Escherichia coli (UPEC), which have shown to have unique and intricate biomechanical properties. It is conjectured that the large flexibility of this type of pili allows for a redistribution of an external shear force among several pili, thereby extending the adhesion lifetime of bacteria. Systems with helix-like adhesion organelles may therefore act as dynamic biomechanical machineries, enhancing the ability of bacteria to withstand high shear forces originating from rinsing flows such as in the urinary tract. This implies that pili constitute an important virulence factor and a possible target for future anti-microbial drugs.
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| 3. |
- Axner, Ove, 1957-, et al.
(författare)
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Laser spectrometric techniques in analytical atomic spectrometry
- 2012
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Ingår i: Encyclopedia of analytical chemistry. - Chichester, UK : John Wiley & Sons, Ltd. - 9780470027318
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Bokkapitel (refereegranskat)abstract
- The main purpose of this article is to describe the theory, instrumentation, and analytical performance of laser analytical atomic spectrometry, focusing on absorption, fluorescence, and ionization techniques. The structure of the article is such that it first provides an outline of the theory of light-matter interactions that prevail for each type of technique as well as of the most common modulation techniques, primarily, wavelength modulation (WM). This is followed by a section that covers the most important types of instrumentation used. The article finally provides a detailed discussion on the specific instrumentation, mode of operation, use, performance, and applications (both analytical and diagnostic) of each technique. In terms of laser atomic absorption, the focus of the discussion is on the use of approaches to enhance the detection capability by either reducing the amount of noise (as is done by the wavelength modulation absorption spectrometry (WMAS) technique) or by providing an extended interaction length (giving rise to cavity-enhanced absorption spectrometry (CEAS) techniques in general, and cavity ring-down spectrometry (CRDS) in particular). Laser atomic fluorescence techniques (often referred to as laser-excited atomic fluorescence spectrometry (LEAFS)) as well as laser ionization techniques (termed either laser-enhanced ionization (LEI) or resonance ionization spectrometry (RIS)) are also covered in some detail. It is shown that several of these techniques are capable of detecting a variety of elements in liquid samples down to low picogram per milliliter (pg mL−1) or parts-per-trillion (ppt) concentrations and in low femtogram amounts. Also other properties of the techniques, e.g. selectivity and linear dynamic range (LDR), are in general superior to those of conventional (nonlaser-based techniques).
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| 4. |
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| 5. |
- Axner, Ove, 1957-, et al.
(författare)
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NICE-OHMS – frequency modulation cavity-enhanced spectroscopy : principles and performance
- 2014
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Ingår i: Cavity-Enhanced Spectroscopy and Sensing. - Berlin : Springer Berlin/Heidelberg. - 9783642400025 - 9783642400032 ; , s. 221-251
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Bokkapitel (refereegranskat)abstract
- Noise-immune cavity-enhanced optical heterodyne molecular spectroscopy (NICE-OHMS) is a sensitive technique for detection of molecular species in gas phase. It is based on a combination of frequency modulation for reduction of noise and cavity enhancement for prolongation of the interaction length between the light and a sample. It is capable of both Doppler-broadened and sub-Doppler detection with absorption sensitivity down to the 10−12 and 10−14 Hz−1/2 cm−1 range, respectively. This chapter provides a thorough description of the basic principles and the performance of the technique.
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| 6. |
- Axner, Ove, 1957-, et al.
(författare)
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Noise-immune cavity-enhanced analytical atomic spectrometry — NICE-AAS : a technique for detection of elements down to zeptogram amounts
- 2014
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Ingår i: Spectrochimica Acta Part B - Atomic Spectroscopy. - : Elsevier. - 0584-8547 .- 1873-3565. ; 100, s. 211-235
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Tidskriftsartikel (refereegranskat)abstract
- Noise-immune cavity-enhanced optical heterodyne molecular spectroscopy (NICE-OHMS) is a powerful technique for detection of molecular compounds in gas phase that is based on a combination of two important concepts: frequency modulation spectroscopy (FMS) for reduction of noise, and cavity enhancement, for prolongation of the interaction length between the light and the sample. Due to its unique properties, it has demonstrated unparalleled detection sensitivity when it comes to detection of molecular constituents in the gas phase. However, despite these, it has so far not been used for detection of atoms, i.e. for elemental analysis. The present work presents an assessment of the expected performance of Doppler-broadened (Db) NICE-OHMS for analytical atomic spectrometry, then referred to as noise-immune cavity-enhanced analytical atomic spectrometry (NICE-AAS). After a description of the basic principles of Db-NICE-OHMS, the modulation and detection conditions for optimum performance are identified. Based on a previous demonstrated detection sensitivity of Db-NICE-OHMS of 5×10−12 cm−1 Hz−1∕2 (corresponding to a single-pass absorbance of 7×10−11 over 10 s), the expected limits of detection (LODs) of Hg and Na by NICE-AAS are estimated. Hg is assumed to be detected in gas phase directly while Na is considered to be atomized in a graphite furnace (GF) prior to detection. It is shown that in the absence of spectral interferences, contaminated sample compartments, and optical saturation, it should be feasible to detect Hg down to 10 zg/cm3 (10 fg/m3 or 10-5 ng/m3), which corresponds to 25 atoms/cm3, and Na down to 0.5 zg (zg = zeptogram = 10-21 g), representing 50 zg/mL (parts-per-sextillion, pps, 1:1021) in liquid solution (assuming a sample of 10 µL) or solely 15 atoms injected into the GF, respectively. These LODs are several orders of magnitude lower (better) than any previous laser-based absorption technique previously has demonstrated under atmospheric pressure conditions. It is prophesied that NICE-AAS could provide such high detection sensitivity that the instrumentation should not, by itself, be the limiting factor of an assessment of elemental abundance; the accuracy of an assessment would then instead be limited by concomitant species, e.g. originating from the handling procedures of the sample or the environment.
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| 7. |
- Ehlers, Patrick, 1981-, et al.
(författare)
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Doppler broadened NICE-OHMS beyond the triplet formalism : assessment of optimum modulation index
- 2014
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Ingår i: Journal of the Optical Society of America. B, Optical physics. - : Optical Society of America. - 0740-3224 .- 1520-8540. ; 31:7, s. 1499-1507
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Tidskriftsartikel (refereegranskat)abstract
- The dependence of Doppler broadened noise-immune cavity-enhanced optical heterodyne molecular spectrometry (NICE-OHMS) on the modulation index, beta, has been investigated experimentally on C2H2 and CO2, both in the absence and the presence of optical saturation. It is shown that the maximum signals are obtained for beta that produce more than one pair of sidebands: in the Doppler limit and for the prevailing conditions (unsaturated transition and the pertinent modulation frequency and Doppler widths) around 1 and 1.4 for the dispersion and absorption detection phases, respectively. The results verify predictions given in an accompanying work. It is also shown that there is no substantial broadening of the NICE-OHMS signal for beta < 1. The use of beta of unity has yielded a Db-NICE-OHMS detection sensitivity of 4.9 x 10(-12) cm(-1) Hz(-1/2), which is the lowest (best) value so far achieved for NICE-OHMS based on a tunable laser. The number of sidebands that needs to be included in fits of the line-shape function to obtain good accuracy has been assessed. It is concluded that it is enough to consider three pairs of sidebands whenever the systematic errors in a concentration assessment should be below 1% when beta < 2 are used and <1 parts per thousand for beta < 1.5.
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| 8. |
- Ehlers, Patrick, 1981-, et al.
(författare)
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Doppler broadened noise-immune cavity-enhanced optical heterodyne molecular spectrometry : optimum modulation and demodulation conditions, cavity length, and modulation order
- 2014
-
Ingår i: Journal of the Optical Society of America. B, Optical physics. - : The Optical Society of America. - 0740-3224 .- 1520-8540. ; 31:9, s. 2051-2060
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Tidskriftsartikel (refereegranskat)abstract
- Doppler broadened noise-immune cavity-enhanced optical heterodyne molecular spectrometry (Db-NICE-OHMS) has been scrutinized with respect to modulation and demodulation conditions (encompassing the modulation frequency,nu(m), the modulation index, beta, and the detection phase, theta), the cavity length, L, and the modulation order, k (defined as nu(m)/nu(FSR), where nu(FSR) is the free-spectral range of the cavity), primarily in the Doppler limit but also for two specific situations in the Voigt regime (for equal Doppler and homogeneous width and for purely Lorentzian broadened transitions), both in the absence and presence of optical saturation (the latter for the case in which the homogeneous broadening is smaller than the modulation frequency). It is found that, for a system with a given cavity length, the optimum conditions (i.e., those that produce the largest NICE-OHMS signal) for an unsaturated transition in the Doppler limit comprise nu(m)/Gamma(D) = 1.6 (where Gamma(D) is the half-width at half-maximum of the Doppler width of the transition), beta = 1.3, and theta = 0.78 pi. It is also found that the maximum is rather broad; the signal takes 95% of its maximum value for modulation frequencies in the entire 0.4 less than or similar to nu(m)/Gamma(D) less than or similar to 2.4 range. When optical saturation sets in, theta shifts toward the dispersion phase. The optimum conditions encompass k > 1 whenever L > 0.35L(D) and 2.6L(D) for the dispersion and absorption modes of detection, respectively [where L-D is a characteristic length given by c/(2 Gamma(D))]. Similar conditions are found under pressure broadened conditions.
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| 9. |
- Ehlers, Patrick, 1981-, et al.
(författare)
-
Fiber-laser-based noise-immune cavity-enhanced optical heterodyne molecular spectrometry incorporating an optical circulator
- 2014
-
Ingår i: Optics Letters. - : Optical Society of America. - 0146-9592 .- 1539-4794. ; 39:2, s. 279-282
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Tidskriftsartikel (refereegranskat)abstract
- To reduce the complexity of fiber-laser-based noise-immune cavity-enhanced optical heterodyne molecular spectrometry, a system incorporating a fiber-coupled optical circulator to deflect the cavity-reflected light for laser stabilization has been realized. Detection near the shot-noise limit has been demonstrated for both Doppler-broadened and sub-Doppler signals, yielding a lowest detectable absorption and optical phase shift of 2.2 x 10(-12) cm(-1) and 4.0 x 10(-12) cm(-1), respectively, both for a 10 s integration time, where the former corresponds to a detection limit of C2H2 of 5 ppt. (C) 2014 Optical Society of America
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| 10. |
- Ehlers, Patrick, 1981-, et al.
(författare)
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Fiber-laser-based noise-immune cavity-enhanced optical heterodyne molecular spectrometry instrumentation for Doppler-broadened detection in the 10-12 cm-1 Hz-1/2 region
- 2012
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Ingår i: Journal of the Optical Society of America. B, Optical physics. - : Optical Society of America. - 0740-3224 .- 1520-8540. ; 29:6, s. 1305-1315
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Tidskriftsartikel (refereegranskat)abstract
- A fiber-laser-based noise-immune cavity-enhanced optical heterodyne molecular spectrometry (FL-NICE-OHMS) system for white-noise-limited Doppler-broadened detection down to 5.6 x 10(-12) cm(-1) Hz(-1/2) is demonstrated. The system is based on a previous FL-NICE-OHMS instrumentation in which the locking of the laser frequency to a cavity mode has been improved by the use of an acousto-optic modulator (AOM) and provision of a more stable environment by the employment of a noise-isolating enclosed double-layer table, a temperature regulation of the laboratory, and an ultra-high-vacuum (UHV) gas system. White-noise behavior up to 10 s provides the instrument with a minimum detectable on-resonance absorbance per unit length of 1.8 x 10(-12) cm(-1) and a relative single-pass absorption (Delta I/I) of 7.2 x 10(-11). The system was applied to detection of acetylene on a transition at 1531.588 nm, yielding a detection sensitivity of C2H2 in atmospheric pressure gas of 4 ppt (measured over 10 s). (C) 2012 Optical Society of America
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