| 1. |
- Palmer, Nicholette D, et al.
(författare)
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A genome-wide association search for type 2 diabetes genes in African Americans.
- 2012
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Ingår i: PloS one. - San Francisco : Public Library of Science (PLoS). - 1932-6203. ; 7:1, s. e29202-
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Tidskriftsartikel (refereegranskat)abstract
- African Americans are disproportionately affected by type 2 diabetes (T2DM) yet few studies have examined T2DM using genome-wide association approaches in this ethnicity. The aim of this study was to identify genes associated with T2DM in the African American population. We performed a Genome Wide Association Study (GWAS) using the Affymetrix 6.0 array in 965 African-American cases with T2DM and end-stage renal disease (T2DM-ESRD) and 1029 population-based controls. The most significant SNPs (n = 550 independent loci) were genotyped in a replication cohort and 122 SNPs (n = 98 independent loci) were further tested through genotyping three additional validation cohorts followed by meta-analysis in all five cohorts totaling 3,132 cases and 3,317 controls. Twelve SNPs had evidence of association in the GWAS (P<0.0071), were directionally consistent in the Replication cohort and were associated with T2DM in subjects without nephropathy (P<0.05). Meta-analysis in all cases and controls revealed a single SNP reaching genome-wide significance (P<2.5×10(-8)). SNP rs7560163 (P = 7.0×10(-9), OR (95% CI) = 0.75 (0.67-0.84)) is located intergenically between RND3 and RBM43. Four additional loci (rs7542900, rs4659485, rs2722769 and rs7107217) were associated with T2DM (P<0.05) and reached more nominal levels of significance (P<2.5×10(-5)) in the overall analysis and may represent novel loci that contribute to T2DM. We have identified novel T2DM-susceptibility variants in the African-American population. Notably, T2DM risk was associated with the major allele and implies an interesting genetic architecture in this population. These results suggest that multiple loci underlie T2DM susceptibility in the African-American population and that these loci are distinct from those identified in other ethnic populations.
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| 2. |
- Voight, Benjamin F., et al.
(författare)
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Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis
- 2010
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Ingår i: Nature Genetics. - : Springer Science and Business Media LLC. - 1061-4036 .- 1546-1718. ; 42:7, s. 579-589
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Tidskriftsartikel (refereegranskat)abstract
- By combining genome-wide association data from 8,130 individuals with type 2 diabetes (T2D) and 38,987 controls of European descent and following up previously unidentified meta-analysis signals in a further 34,412 cases and 59,925 controls, we identified 12 new T2D association signals with combined P < 5 x 10(-8). These include a second independent signal at the KCNQ1 locus; the first report, to our knowledge, of an X-chromosomal association (near DUSP9); and a further instance of overlap between loci implicated in monogenic and multifactorial forms of diabetes (at HNF1A). The identified loci affect both beta-cell function and insulin action, and, overall, T2D association signals show evidence of enrichment for genes involved in cell cycle regulation. We also show that a high proportion of T2D susceptibility loci harbor independent association signals influencing apparently unrelated complex traits.
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| 3. |
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- 2019
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Tidskriftsartikel (refereegranskat)
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| 4. |
- Abarenkov, Kessy, et al.
(författare)
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Annotating public fungal ITS sequences from the built environment according to the MIxS-Built Environment standard – a report from a May 23-24, 2016 workshop (Gothenburg, Sweden)
- 2016
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Ingår i: MycoKeys. - : Pensoft Publishers. - 1314-4057 .- 1314-4049. ; 16, s. 1-15
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Tidskriftsartikel (refereegranskat)abstract
- Recent molecular studies have identified substantial fungal diversity in indoor environments. Fungi and fungal particles have been linked to a range of potentially unwanted effects in the built environment, including asthma, decay of building materials, and food spoilage. The study of the built mycobiome is hampered by a number of constraints, one of which is the poor state of the metadata annotation of fungal DNA sequences from the built environment in public databases. In order to enable precise interrogation of such data – for example, “retrieve all fungal sequences recovered from bathrooms” – a workshop was organized at the University of Gothenburg (May 23-24, 2016) to annotate public fungal barcode (ITS) sequences according to the MIxS-Built Environment annotation standard (http://gensc.org/mixs/). The 36 participants assembled a total of 45,488 data points from the published literature, including the addition of 8,430 instances of countries of collection from a total of 83 countries, 5,801 instances of building types, and 3,876 instances of surface-air contaminants. The results were implemented in the UNITE database for molecular identification of fungi (http://unite.ut.ee) and were shared with other online resources. Data obtained from human/animal pathogenic fungi will furthermore be verified on culture based metadata for subsequent inclusion in the ISHAM-ITS database (http://its.mycologylab.org).
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| 6. |
- Afzelius, Mikael, et al.
(författare)
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Development of multipoint vibrational coherent anti-Stokes Raman spectroscopy for flame applications
- 2006
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Ingår i: Applied Optics. - 2155-3165. ; 45:6, s. 1177-1186
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Tidskriftsartikel (refereegranskat)abstract
- A novel technique for coherent anti-Stokes Raman spectroscopy (CARS) measurements in multiple points is presented. In a multipass cavity the pump and Stokes laser beams are multiply reflected and refocused into a measurement volume with an adjustable number of separated points along a line. This optical arrangement was used in a vibrational CARS setup with planar BOXCARS phase-matching configuration. The CARS spectra from spatially separated points were recorded at different heights on a CCD camera. Measurements of temperature profiles were carried out in the burned gas zone of a premixed one-dimensional flame to demonstrate the applicability of this method for temperature measurements in high-temperature regions. The ability to measure in flames with strong density gradients was demonstrated by simultaneous measurements of Q-branch spectra of N-2 and CO in a Wolfhard-Parker burner flame. Interference phenomena found in multipoint spectra are discussed, and possible solutions are proposed. Merits and limitations of the technique are discussed. (c) 2006 Optical Society of America.
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| 7. |
- Afzelius, Mikael, et al.
(författare)
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Pure rotational coherent anti-Stokes Raman spectroscopy in mixtures of CO and N-2
- 2004
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Ingår i: Applied Optics. - 2155-3165. ; 43:36, s. 6664-6672
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Tidskriftsartikel (refereegranskat)abstract
- We present a model for quantitative measurements in binary mixtures of nitrogen and carbon monoxide by the use of dual-broadband rotational coherent anti-Stokes Raman spectroscopy. The model has been compared with experimental rotational coherent anti-Stokes Raman scattering spectra recorded within the temperature range of 294-702 K. Temperatures and concentrations were evaluated by spectral fits using libraries of theoretically calculated spectra. The relative error of the temperature measurements was 1-2%, and the absolute error of the CO concentration measurements was <0.5% for temperatures less than or equal to600 K. For higher temperatures, the gas composition was not chemically stable, and we observed a conversion of CO to CO2. The influence of important spectroscopic parameters such as the anisotropic polarizability and Raman line-broadening coefficients are discussed in terms of concentration measurements. In particular, it is shown that the CO concentration measurement was more accurate if N-2-CO and CO-N-2 line-broadening coefficients were included in the calculation. The applicability of the model for quantitative flame measurements is demonstrated by measuring CO concentrations in ethylene/air flames. (C) 2004 Optical Society of America.
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| 9. |
- Andersson, Arne, et al.
(författare)
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Ottenby fågelstation : Årsrapport 1999
- 1999
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Rapport (övrigt vetenskapligt/konstnärligt)abstract
- Decenniets, seklets och milleniets sista år blev ett år av stora förändringar vid Ottenby fågelstation. Deföregående tre-fyra åren hade präglats av mycket dålig ekonomi och därtill personalproblem. Under 1998blev situationen akut. Som ett första led i att förbättra situationen ombildades Ottenbykommittén (avSveriges Ornitologiska Förening satt att sköta fågelstationen) under hösten 1998. Den störstaförändringen blev sedan att Jan Pettersson, platschef sedan 1978, sades upp. Därtill kom uppsägning,pensionering, dödsfall (se nedan) och sedan tidigare överflyttade tjänster till OFAB, vilket innebar detatt den “fast” anställda personalstyrkan, som 1992 var 7 personer, reducerades till noll!Ottenbykommittén har nu fått en mycket mer aktiv roll i stationens arbete. Olika verksamhetsdelar haridentifierats och ledamöterna har getts olika ansvarsområden.Kommittén bestod under året av :Åke Lindström (ordförande)Christian Hjort (sekreterare, utlandsverksamheten)Dennis Kraft (ekonomi)Arne Andersson (datafrågor)Dennis Hasselquist (samordning av ansökningar)Anders Hedenström (forskningssamordnare)Niclas Jonzén (personal)Lars Lindell (SOF:s styrelse).Aktiviteterna inom dessa olika områden redovisas nedan och här skallbara de generella linjerna i arbetet läggas fram.Tvivelsutan förbättrades arbetsklimatet för den ideellt arbetandepersonalen på fågelstationen och glädjande nog var tillströmningen storav arbetsvilliga ungdomar. Stationen blev på många sätt öppnare, inteminst mot fågelskådarleden. Fler personer besökte stationen och pådetta sätt kan många fler känna sig delaktiga och trivas. Nackdelen äratt det rent praktiskt blir svårare att driva verksamheten med mångamänniskor närvarande och relativt stor omsättning på personer.Genom mycket hård åtstramning på utgiftssidan kunde ett förväntat rejält underskott i budgeten vändastill en liten vinst. Alla inblandade skall ha stor ära av detta eftersom både stora som små uppoffringarkrävts för att styra ekonomin rätt. Den lilla vinsten användes till att börja täcka det underskott somunder många år ackumulerats. Även om det nu känns som att vi har en god kontroll över den löpandeekonomin så måste vi på lång sikt hitta fler finansieringskällor till stationens verksamhet. Det är tillexempel mycket otillfredsställande att vi nu inte har någon heltidsanställd personal, något som på siktmåste lösas.Fågelstationens gamla dröm om att ha en egen filial söder om Sahara gick i uppfyllelse under 1999 meden månads försöksverksamhet i Nigeria under våren. Denna slog väl ut på alla sätt och verksamhetenskall nu intensifieras under 2000.Datahanteringen fick sig en rejäl skjuts framåt under året och kan vi bara snart förnya maskinparken finnsgrunden för en smidig och effektiv datahantering vid stationen. Detta kommer att underlätta bådeutåtriktad verksamhet (Internet) och eget analysarbete.Ottenby Försäljnings AB (OFAB), som drivit den affärsmässiga delen av stationens verksamhet sedan1995, fortsatte sin verksamhet parallellt med fågelstationens ideella verksamhet. Genom verksamheten iNaturum och restaurang Fågel Blå svarar OFAB för en viktig del av fågelstationens publika aktiviteter.Det är av stor vikt för framtiden att behålla och utveckla det goda samarbetet mellan fågelstationen ochOFAB.Figur 1. Åke LindströmFigur 2. Patrik Rhönnstad, platschef 1999Kontinuiteten i det praktiska arbetet på stationen blev naturligtvis något lidande av att den rutineradepersonalen försvunnit. Situationen hjälptes dock upp signifikant av att OFABs personal fanns på plats(Håkan och Annika Lundkvist, Gösta Friberg) samt att nye platschefen och många av de ideelltarbetande hade erfarenhet från tidigare år.
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