| 11. |
- Ai, Yue-Jie, et al.
(författare)
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Theoretical studies on the isomerization mechanism of the ortho-green fluorescent protein chromophore
- 2012
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Ingår i: Physical Chemistry, Chemical Physics - PCCP. - : Royal Society of Chemistry (RSC). - 1463-9076 .- 1463-9084. ; 14:38, s. 13409-13414
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Tidskriftsartikel (refereegranskat)abstract
- We present a systematic theoretical investigation on the overall ground state and excited-state isomerization reaction mechanism of ortho-green fluorescent protein chromophore (o-HBDI) using the density functional theory and the multireference methods. The calculated results and subsequent analysis suggest the possible isomerization mechanism for o-HBDI. By comparison with experimental observation and detailed analysis, it is concluded that as initiated by the excited-state intramolecular proton transfer reaction, the conical intersection between the ground state and the excited state along the C4-C5 single-bond rotational coordinate is responsible for the rapid deactivation of o-HBDI.
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| 12. |
- Ai, Yue-Jie, et al.
(författare)
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Ultrafast deactivation processes in the 2-aminopyridine dimer and the adenine-thymine base pair : Similarities and differences
- 2010
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Ingår i: Journal of Chemical Physics. - : AIP Publishing. - 0021-9606 .- 1089-7690. ; 133:6, s. 064302-
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Tidskriftsartikel (refereegranskat)abstract
- 2-aminopyridine dimer has frequently been used as a model system for studying photochemistry of DNA base pairs. We examine here the relevance of 2-aminopyridine dimer for a Watson-Crick adenine-thymine base pair by studying UV-light induced photodynamics along two main hydrogen bridges after the excitation to the localized (1)pi pi(*) excited-state. The respective two-dimensional potential-energy surfaces have been determined by time-dependent density functional theory with Coulomb-attenuated hybrid exchange-correlation functional (CAM-B3LYP). Different mechanistic aspects of the deactivation pathway have been analyzed and compared in detail for both systems, while the related reaction rates have also be obtained from Monte Carlo kinetic simulations. The limitations of the 2-aminopyridine dimer as a model system for the adenine-thymine base pair are discussed. (C) 2010 American Institute of Physics. [doi:10.1063/1.3464485]
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| 13. |
- Chang, Chiao-Nien, et al.
(författare)
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The Design, Structure–Activity, and Kinetic Studies of 3-Benzyl-5-oxa-1,2,3,4-Tetrahydro-2H-chromeno-(3,4-c)pyridin-8-yl Sulfamates as Steroid Sulfatase Inhibitors
- 2022
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Ingår i: Bioorganic chemistry. - : Elsevier BV. - 0045-2068.
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Tidskriftsartikel (refereegranskat)abstract
- Steroid sulfatase inhibitors block the local production of estrogenic steroids and are attractive agents for the treatment of estrogen-dependent cancers. Inspiration of coumarin-based inhibitors, we synthesized thirty-two 5-oxa-1,2,3,4-tetrahydro-2H-chromeno-(3,4-c)pyridin-8-yl sulfamates, focusing on the substitution derivatives on the adjacent phenyl ring and evaluated their abilities to block STS from human placenta and MCF-7 cells. SAR analysis revealed that the incorporation of chlorine at either meta and/or para position of the adjacent phenyl ring of the tricyclic skeleton enhanced STS inhibition. Di-substitutions at the adjacent phenyl ring were superior to mono and tri-substitutions. Further kinetic analysis of these compounds revealed that chloride-bearing compounds, such as 19m, 19v, and 19w, had KI of 0.02 to 0.11 nM and kinact/KI ratios of 8.8-17.5 nM-1min-1, a parameter indicated for the efficiency of irreversible inhibition. We also used the docking model to illustrate the difference in STS inhibitory potency of compounds. Finally, the safety and anti-cancer activity of selected compounds 19m, 19v, and 19w were also studied, showing the results of low cytotoxicity on NHDF cell line and being more potent than irosustat on ZR-75-1 cell, which was a hormone-dependent cancer cell line with high STS expression.
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| 14. |
- Cheng, Fang, et al.
(författare)
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Vimentin coordinates fibroblast proliferation and keratinocyte differentiation in wound healing via TGF-beta-Slug signaling
- 2016
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Ingår i: Proceedings of the National Academy of Sciences of the United States of America. - : Proceedings of the National Academy of Sciences. - 0027-8424 .- 1091-6490. ; 113:30, s. E4320-E4327
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Tidskriftsartikel (refereegranskat)abstract
- Vimentin has been shown to be involved in wound healing, but its functional contribution to this process is poorly understood. Here we describe a previously unrecognized function of vimentin in coordinating fibroblast proliferation and keratinocyte differentiation during wound healing. Loss of vimentin led to a severe deficiency in fibroblast growth, which in turn inhibited the activation of two major initiators of epithelial-mesenchymal transition (EMT), TGF-beta 1 signaling and the Zinc finger transcriptional repressor protein Slug, in vimentin-deficient (VIM-/-) wounds. Correspondingly, VIM-/- wounds exhibited loss of EMT-like keratinocyte activation, limited keratinization, and slow reepithelialization. Furthermore, the fibroblast deficiency abolished collagen accumulation in the VIM-/- wounds. Vimentin reconstitution in VIM-/- fibroblasts restored both their proliferation and TGF-beta 1 production. Similarly, restoring paracrine TGF-beta-Slug-EMT signaling reactivated the transdifferentiation of keratinocytes, reviving their migratory properties, a critical feature for efficient healing. Our results demonstrate that vimentin orchestrates the healing by controlling fibroblast proliferation, TGF-beta 1-Slug signaling, collagen accumulation, and EMT processing, all of which in turn govern the required keratinocyte activation.
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| 15. |
- Dan, Lilin, et al.
(författare)
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Design of Offset Spatial Modulation OFDM
- 2021
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Ingår i: IEEE Transactions on Communications. - : Institute of Electrical and Electronics Engineers (IEEE). - 0090-6778 .- 1558-0857. ; 69:9, s. 6267-6280
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Tidskriftsartikel (refereegranskat)abstract
- In this paper, the idea of offset spatial modulation (OSM) is integrated with orthogonal frequency division multiplexing (OFDM), toward an efficient design to bridge their advantages. Compared to its conventional counterpart as spatial modulation (SM)-OFDM, the proposed OSM-OFDM scheme aims at providing a simplified implementation structure with less number of radio frequency (RF) chains, by introducing an offset between the RF chain and the index of the activated transmit antenna on each subcarrier. Specifically, three types of offset antenna selection (OAS) methods are developed to meet different scene requirements for different number of available RF chains. Furthermore, through theoretical analysis, we quantify the bit error rate upper bounds of OSM-OFDM with different types of OAS methods. Finally, extensive computer simulations demonstrate that OSM-OFDM provides a flexible tradeoff among implementation cost, computation complexity and error performance.
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| 16. |
- Elbediwi, M, et al.
(författare)
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Global Burden of Colistin-Resistant Bacteria: Mobilized Colistin Resistance Genes Study (1980-2018)
- 2019
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Ingår i: Microorganisms. - : MDPI AG. - 2076-2607. ; 7:10
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Tidskriftsartikel (refereegranskat)abstract
- Colistin is considered to be an antimicrobial of last-resort for the treatment of multidrug-resistant Gram-negative bacterial infections. The recent global dissemination of mobilized colistin resistance (mcr) genes is an urgent public health threat. An accurate estimate of the global prevalence of mcr genes, their reservoirs and the potential pathways for human transmission are required to implement control and prevention strategies, yet such data are lacking. Publications from four English (PubMed, Scopus, the Cochrane Database of Systematic Reviews and Web of Science) and two Chinese (CNKI and WANFANG) databases published between 18 November 2015 and 30 December 2018 were identified. In this systematic review and meta-analysis, the prevalence of mcr genes in bacteria isolated from humans, animals, the environment and food products were investigated. A total of 974 publications were identified. 202 observational studies were included in the systematic review and 71 in the meta-analysis. mcr genes were reported from 47 countries across six continents and the overall average prevalence was 4.7% (0.1–9.3%). China reported the highest number of mcr-positive strains. Pathogenic Escherichia coli (54%), isolated from animals (52%) and harboring an IncI2 plasmid (34%) were the bacteria with highest prevalence of mcr genes. The estimated prevalence of mcr-1 pathogenic E. coli was higher in food-animals than in humans and food products, which suggests a role for foodborne transmission. This study provides a comprehensive assessment of prevalence of the mcr gene by source, organism, genotype and type of plasmid.
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| 17. |
- Fang, Ruisen, et al.
(författare)
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Late Ediacaran cavity-dwelling filamentous microorganisms accommodated in a valve-like organism from the uppermost Dengying Formation in eastern Yunnan of South China
- 2022
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Ingår i: Precambrian Research. - : Elsevier. - 0301-9268 .- 1872-7433. ; 379
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Tidskriftsartikel (refereegranskat)abstract
- The Ediacaran–Cambrian transition, one of the major turning points in Earth’s history, is characterized by an epoch-making change in biosphere. In South China, the late Ediacaran Dengying Formation (ca. 551–538 Ma) is an important stratigraphic unit yielding trace fossils, tubular skeletal fossils and some complex forms that represent possible bilateral animals. The fossil-bearing Ediacaran strata of eastern Yunnan is hitherto known from the Jiucheng Member containing the Jiangchuan Biota, together with the enigmatic cosmopolitan taxon Shaanxilithes. Here, we present for the first time cavity-dwelling filamentous microorganisms accommodated within a valve-like fossil from the upper Baiyanshao Member of the Dengying Formation at the Sujiawa Section in Huize County, eastern Yunnan of China. SEM scanning and Micro-CT reconstruction indicate that the well-preserved filaments were characterized by mycelial network structures with abundant branching pattern. Preservation of filamentous microorganisms might result from the decay process of soft parts that were originally accommodated and enclosed within the valve-like organism, and subsequently preserved by early diagenetic phosphatization, which obscures their original organic identity and chemical composition. This paper potentially presents the first fossil evidence of a saprophytic relationship between microorganisms as decomposers and a valve-like organism prior to the eve of the Cambrian Explosion of metazoan animals.
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| 18. |
- Fang, Shu, et al.
(författare)
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Offset Spatial Modulation and Offset Space Shift Keying : Efficient Designs for Single-RF MIMO Systems
- 2019
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Ingår i: IEEE Transactions on Communications. - : IEEE-INST ELECTRICAL ELECTRONICS ENGINEERS INC. - 0090-6778 .- 1558-0857. ; 67:8, s. 5434-5444
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Tidskriftsartikel (refereegranskat)abstract
- Spatial modulation (SM) and space shift keying (SSK) techniques have the unique advantages of their single-radio-frequency (RF) structures compared with conventional multiple-input-multiple-output (MIMO) techniques. However, the transmission rates of these techniques are decided by the maximal switching frequency or by the minimal switching time between the RF chain and transmit antennas, which has been a bottleneck for their applications in future broadband wireless communications. To alleviate this problem, we propose a class of novel offset SM (OSM) and offset SSK (OSSK) schemes, with the aid of channel state information (CSI) at the transmitter. Compared with conventional SM and SSK, the proposed OSM and OSSK schemes can reduce the switching frequency of the RF chain, by introducing an offset between the connected RF chain and the index of the spatial modulated antenna. In extreme conditions, the proposed OSM and OSSK can work without RF switching while maintaining the single-RF advantage of conventional SM and SSK schemes. Through theoretical analysis, we also develop the bit-error rate (BER) performance bounds for the proposed two schemes. Finally, our simulation results demonstrate that the proposed OSM and OSSK outperform their counterparts, including conventional SM, SSK, CSI-aided SM, and CSI-aided SSK, while having a simplified RF-switching structure.
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| 19. |
- Fang, Xing, et al.
(författare)
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Microstructure and mechanical properties of the laser welded air-hardening steel joint
- 2024
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Ingår i: Materials Characterization. - : Elsevier BV. - 1044-5803 .- 1873-4189. ; 213
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Tidskriftsartikel (refereegranskat)abstract
- The decrease in mechanical properties of high-strength steel after welding is an important issue affecting the wide application of high-strength steel. Air-hardening steel is a high-strength steel suitable for lower body structural parts such as subframes. Its application process involves welding, hot forming and other processes. The present work investigates the microstructure and mechanical properties of the air-hardening steel laser welded joint that is air-cooled after hot forming in the two-phase zone (800 °C). The microstructure was characterized by electron backscattered diffraction (EBSD), scanning electron microscope (SEM) and transmission electron microscope (TEM). The results show that during hot forming, the welded joint transforms from martensite to ferrite and acicular martensite, and the base metal transforms from ferrite to polygonal martensite and ferrite. The difference in martensite morphology between the welded joint and the base metal is attributed to the nucleation positions of austenite. The structural evolution of the welded joint and the base metal is accompanied with the annihilation and reproduction of dislocations, which results in significant changes in hardness. The hardness value dropped from the highest 430 HV to 271 HV in the welded joint, while increased from the lowest 184 HV to 203 HV in the base metal. After hot forming, the tensile strength of the welded sample is reduced by only 36 MPa, and the total elongation is slightly decreased by about 1.5% compared with the unwelded sample. The welded joint and the base metal have similar plastic deformation capabilities, since the acicular martensite in the welded joint displays good plastic deformation ability, and the dislocation density of the welded joint and the base metal is similar. Overall, the microstructure and dislocation density of the air-hardening steel welded joint after hot forming are similar to those of the base metal, which is responsible for the good mechanical properties of air-hardening steel welded joint.
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| 20. |
- Hantson, Stijn, et al.
(författare)
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Quantitative assessment of fire and vegetation properties in simulations with fire-enabled vegetation models from the Fire Model Intercomparison Project
- 2020
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Ingår i: Geoscientific Model Development. - : Copernicus GmbH. - 1991-959X .- 1991-9603. ; 13:7, s. 3299-3318
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Tidskriftsartikel (refereegranskat)abstract
- Global fire-vegetation models are widely used to assess impacts of environmental change on fire regimes and the carbon cycle and to infer relationships between climate, land use and fire. However, differences in model structure and parameterizations, in both the vegetation and fire components of these models, could influence overall model performance, and to date there has been limited evaluation of how well different models represent various aspects of fire regimes. The Fire Model Intercomparison Project (FireMIP) is coordinating the evaluation of state-of-the-art global fire models, in order to improve projections of fire characteristics and fire impacts on ecosystems and human societies in the context of global environmental change. Here we perform a systematic evaluation of historical simulations made by nine FireMIP models to quantify their ability to reproduce a range of fire and vegetation benchmarks. The FireMIP models simulate a wide range in global annual total burnt area (39-536 Mha) and global annual fire carbon emission (0.91-4.75 Pg C yr-1) for modern conditions (2002-2012), but most of the range in burnt area is within observational uncertainty (345-468 Mha). Benchmarking scores indicate that seven out of nine FireMIP models are able to represent the spatial pattern in burnt area. The models also reproduce the seasonality in burnt area reasonably well but struggle to simulate fire season length and are largely unable to represent interannual variations in burnt area. However, models that represent cropland fires see improved simulation of fire seasonality in the Northern Hemisphere. The three FireMIP models which explicitly simulate individual fires are able to reproduce the spatial pattern in number of fires, but fire sizes are too small in key regions, and this results in an underestimation of burnt area. The correct representation of spatial and seasonal patterns in vegetation appears to correlate with a better representation of burnt area. The two older fire models included in the FireMIP ensemble (LPJ-GUESS-GlobFIRM, MC2) clearly perform less well globally than other models, but it is difficult to distinguish between the remaining ensemble members; some of these models are better at representing certain aspects of the fire regime; none clearly outperforms all other models across the full range of variables assessed.
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