| 31. |
- Abbafati, Cristiana, et al.
(author)
-
- 2020
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Journal article (peer-reviewed)
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| 32. |
- Alexandridis, Nikolaos, et al.
(author)
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Archetype models upscale understanding of natural pest control response to land-use change
- 2022
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In: Ecological Applications. - : Wiley. - 1051-0761 .- 1939-5582. ; 32:8
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Journal article (peer-reviewed)abstract
- Control of crop pests by shifting host plant availability and natural enemy activity at landscape scales has great potential to enhance the sustainability of agriculture. However, mainstreaming natural pest control requires improved understanding of how its benefits can be realized across a variety of agroecological contexts. Empirical studies suggest significant but highly variable responses of natural pest control to land-use change. Current ecological models are either too specific to provide insight across agroecosystems, or too generic to guide management with actionable predictions. We suggest getting the full benefit of available empirical, theoretical and methodological knowledge, by combining trait-mediated understanding from correlative studies with the explicit representation of causal relationships achieved by mechanistic modeling. To link these frameworks, we adapt the concept of archetypes, or context-specific generalizations, from sustainability science. Similar responses of natural pest control to land-use gradients across cases that share key attributes, such as functional traits of focal organisms, indicate general processes that drive system behavior in a context-sensitive manner. Based on such observations of natural pest control, a systematic definition of archetypes can provide the basis for mechanistic models of intermediate generality that cover all major agroecosystems worldwide. Example applications demonstrate the potential for upscaling understanding and improving prediction of natural pest control, based on knowledge transfer and scientific synthesis. A broader application of this mechanistic archetype approach promises to enhance ecology's contribution to natural resource management across diverse regions and social-ecological contexts.
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| 33. |
- Andreoni, Igor, et al.
(author)
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Fast-transient Searches in Real Time with ZTFReST : Identification of Three Optically Discovered Gamma-Ray Burst Afterglows and New Constraints on the Kilonova Rate
- 2021
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In: Astrophysical Journal. - : American Astronomical Society. - 0004-637X .- 1538-4357. ; 918:2
-
Journal article (peer-reviewed)abstract
- The most common way to discover extragalactic fast transients, which fade within a few nights in the optical, is via follow-up of gamma-ray burst and gravitational-wave triggers. However, wide-field surveys have the potential to identify rapidly fading transients independently of such external triggers. The volumetric survey speed of the Zwicky Transient Facility (ZTF) makes it sensitive to objects as faint and fast fading as kilonovae, the optical counterparts to binary neutron star mergers, out to almost 200 Mpc. We introduce an open-source software infrastructure, the ZTF REaltime Search and Triggering, ZTFReST, designed to identify kilonovae and fast transients in ZTF data. Using the ZTF alert stream combined with forced point-spread-function photometry, we have implemented automated candidate ranking based on their photometric evolution and fitting to kilonova models. Automated triggering, with a human in the loop for monitoring, of follow-up systems has also been implemented. In 13 months of science validation, we found several extragalactic fast transients independently of any external trigger, including two supernovae with post-shock cooling emission, two known afterglows with an associated gamma-ray burst (ZTF20abbiixp, ZTF20abwysqy), two known afterglows without any known gamma-ray counterpart (ZTF20aajnksq, ZTF21aaeyldq), and three new fast-declining sources (ZTF20abtxwfx, ZTF20acozryr, ZTF21aagwbjr) that are likely associated with GRB200817A, GRB201103B, and GRB210204A. However, we have not found any objects that appear to be kilonovae. We constrain the rate of GW170817-like kilonovae to R < 900 Gpc(-3) yr(-1) (95% confidence). A framework such as ZTFReST could become a prime tool for kilonova and fast-transient discovery with the Vera Rubin Observatory.
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| 34. |
- Arcavi, Iair, et al.
(author)
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Energetic eruptions leading to a peculiar hydrogen-rich explosion of a massive star
- 2017
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In: Nature. - : Springer Science and Business Media LLC. - 0028-0836 .- 1476-4687. ; 551:7679, s. 210-213
-
Journal article (peer-reviewed)abstract
- Every supernova so far observed has been considered to be the terminal explosion of a star. Moreover, all supernovae with absorption lines in their spectra show those lines decreasing in velocity over time, as the ejecta expand and thin, revealing slower-moving material that was previously hidden. In addition, every supernova that exhibits the absorption lines of hydrogen has one main light-curve peak, or a plateau in luminosity, lasting approximately 100 days before declining(1). Here we report observations of iPTF14hls, an event that has spectra identical to a hydrogen-rich core-collapse supernova, but characteristics that differ extensively from those of known supernovae. The light curve has at least five peaks and remains bright for more than 600 days; the absorption lines show little to no decrease in velocity; and the radius of the line-forming region is more than an order of magnitude bigger than the radius of the photosphere derived from the continuum emission. These characteristics are consistent with a shell of several tens of solar masses ejected by the progenitor star at supernova-level energies a few hundred days before a terminal explosion. Another possible eruption was recorded at the same position in 1954. Multiple energetic pre-supernova eruptions are expected to occur in stars of 95 to 130 solar masses, which experience the pulsational pair instability(2-5). That model, however, does not account for the continued presence of hydrogen, or the energetics observed here. Another mechanism for the violent ejection of mass in massive stars may be required.
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| 35. |
- Baba, Yuki G., et al.
(author)
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Host-dependent differences in prey acquisition between populations of a kleptoparasitic spider Argyrodes kumadai (Araneae: Theridiidae)
- 2007
-
In: Ecological Entomology. - : Wiley. - 0307-6946 .- 1365-2311. ; 32:1, s. 38-44
-
Journal article (peer-reviewed)abstract
- 1. A kleptoparasitic spider, Argyrodes kumadai, is known to use phylogenetically unrelated host species in different regions - Cyrtophora moluccensis (Araneidae) in south-west Japan and Agelena silvatica (Agelenidae) in north-east Japan. The work reported here examined whether differences in host characters affect prey acquisition of A. kumadai. 2. Field surveys showed that prey-biomass capture rate of Argyrodes was significantly higher in populations parasitising Cyrtophora than in populations parasitising Agelena. Although Argyrodes appeared to catch fewer prey within Cyrtophora webs, they were able to feed upon substantially larger prey. 3. Differences in prey-biomass capture rate were found to reflect differences in host traits rather than regional differences in potential prey availability. Individuals in populations parasitising Cyrtophora were observed to acquire prey via a number of foraging tactics that included stealing wrapped food bundles, feeding upon prey remains and, in the case of large prey items, feeding together with the host. In contrast, individuals in populations parasitising Agelena were only ever observed to feed upon small prey items ignored by its host. 4. This variability in prey acquisition between kleptoparasite populations reflected different opportunities for feeding within their respective host webs - opportunities that were primarily determined by the foraging behaviour of the host. One key trait associated with host foraging behaviour was host-web structure, namely the presence/absence of a retreat.
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| 36. |
- Bellenguez, Celine, et al.
(author)
-
Genome-wide association study identifies a variant in HDAC9 associated with large vessel ischemic stroke
- 2012
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In: Nature Genetics. - : Springer Science and Business Media LLC. - 1546-1718 .- 1061-4036. ; 44:3, s. 141-328
-
Journal article (peer-reviewed)abstract
- Genetic factors have been implicated in stroke risk, but few replicated associations have been reported. We conducted a genome-wide association study (GWAS) for ischemic stroke and its subtypes in 3,548 affected individuals and 5,972 controls, all of European ancestry. Replication of potential signals was performed in 5,859 affected individuals and 6,281 controls. We replicated previous associations for cardioembolic stroke near PITX2 and ZFHX3 and for large vessel stroke at a 9p21 locus. We identified a new association for large vessel stroke within HDAC9 (encoding histone deacetylase 9) on chromosome 7p21.1 (including further replication in an additional 735 affected individuals and 28,583 controls) (rs11984041; combined P = 1.87 x 10(-11); odds ratio (OR) = 1.42, 95% confidence interval (CI) = 1.28-1.57). All four loci exhibited evidence for heterogeneity of effect across the stroke subtypes, with some and possibly all affecting risk for only one subtype. This suggests distinct genetic architectures for different stroke subtypes.
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| 37. |
- Bellm, Eric C., et al.
(author)
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The Zwicky Transient Facility : Surveys and Scheduler
- 2019
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In: Publications of the Astronomical Society of the Pacific. - : IOP Publishing. - 0004-6280 .- 1538-3873. ; 131:1000
-
Journal article (peer-reviewed)abstract
- We present a novel algorithm for scheduling the observations of time-domain imaging surveys. Our integer linear programming approach optimizes an observing plan for an entire night by assigning targets to temporal blocks, enabling strict control of the number of exposures obtained per field and minimizing filter changes. A subsequent optimization step minimizes slew times between each observation. Our optimization metric self-consistently weights contributions from time-varying airmass, seeing, and sky brightness to maximize the transient discovery rate. We describe the implementation of this algorithm on the surveys of the Zwicky Transient Facility and present its on-sky performance.
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| 38. |
- Berger, David, et al.
(author)
-
Elevated temperature increases genome-wide selection on de novo mutations
- 2021
-
In: Proceedings of the Royal Society of London. Biological Sciences. - : Royal Society. - 0962-8452 .- 1471-2954. ; 288:1944
-
Journal article (peer-reviewed)abstract
- Adaptation in new environments depends on the amount of genetic variation available for evolution, and the efficacy by which natural selection discriminates among this variation. However, whether some ecological factors reveal more genetic variation, or impose stronger selection pressures than others, is typically not known. Here, we apply the enzyme kinetic theory to show that rising global temperatures are predicted to intensify natural selection throughout the genome by increasing the effects of DNA sequence variation on protein stability. We test this prediction by (i) estimating temperature-dependent fitness effects of induced mutations in seed beetles adapted to ancestral or elevated temperature, and (ii) calculate 100 paired selection estimates on mutations in benign versus stressful environments from unicellular and multicellular organisms. Environmental stress per se did not increase mean selection on de novo mutation, suggesting that the cost of adaptation does not generally increase in new ecological settings to which the organism is maladapted. However, elevated temperature increased the mean strength of selection on genome-wide polymorphism, signified by increases in both mutation load and mutational variance in fitness. These results have important implications for genetic diversity gradients and the rate and repeatability of evolution under climate change.
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| 39. |
- Berger, David, et al.
(author)
-
Quantitative genetic divergence and standing genetic (CO)variance in thermal reaction norms along latitude
- 2013
-
In: Evolution. - : Wiley. - 0014-3820 .- 1558-5646. ; 67:8, s. 2385-2399
-
Journal article (peer-reviewed)abstract
- Although the potential to adapt to warmer climate is constrained by genetic trade-offs, our understanding of how selection and mutation shape genetic (co)variances in thermal reaction norms is poor. Using 71 isofemale lines of the fly Sepsis punctum, originating from northern, central, and southern European climates, we tested for divergence in juvenile development rate across latitude at five experimental temperatures. To investigate effects of evolutionary history in different climates on standing genetic variation in reaction norms, we further compared genetic (co) variances between regions. Flies were reared on either high or low food resources to explore the role of energy acquisition in determining genetic trade-offs between different temperatures. Although the latter had only weak effects on the strength and sign of genetic correlations, genetic architecture differed significantly between climatic regions, implying that evolution of reaction norms proceeds via different trajectories at high latitude versus low latitude in this system. Accordingly, regional genetic architecture was correlated to region-specific differentiation. Moreover, hot development temperatures were associated with low genetic variance and stronger genetic correlations compared to cooler temperatures. We discuss the evolutionary potential of thermal reaction norms in light of their underlying genetic architectures, evolutionary histories, and the materialization of trade-offs in natural environments.
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| 40. |
- Berger, David, et al.
(author)
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What keeps insects small? - Size dependent predation on two species of butterfly larvae
- 2006
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In: Evolutionary Ecology. - : Springer Science and Business Media LLC. - 0269-7653 .- 1573-8477. ; 20:6, s. 575-589
-
Journal article (peer-reviewed)abstract
- Insect size usually increases greatly in the latter stages of development, while reproductive value increases strongly with adult size. Mechanisms that can balance the benefits associated with increased growth are poorly understood, raising the question: what keeps insects from becoming larger? If predation risk was to increase with juvenile size, it would make an extension of development very risky, favouring smaller final sizes. But field measures of juvenile mortality seldom show any general patterns of size dependence. We here therefore try to estimate a mechanistic relationship between juvenile size and predation risk by exposing the larvae of two closely related butterflies to a generalist invertebrate predator in a laboratory experiment. Predation risk increased with larval size but was not affected by the species-specific growth rate differences. These results indicate that predation risk may increase with the size of the juvenile even when predators are relatively small. By basing a model simulation on our data we also show that size dependent predation of the kind found in this study has potential to stabilise selection on body size in these species. Thus, these findings suggest that more detailed studies of the size dependence of predation risk on juvenile instars will increase the understanding of what it is that keeps insects small.
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