| 231. |
- Jansen, Marielle J. A., et al.
(författare)
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Patient-specific fine-tuning of convolutional neural networks for follow-up lesion quantification
- 2020
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Ingår i: Journal of Medical Imaging. - : SPIE-SOC PHOTO-OPTICAL INSTRUMENTATION ENGINEERS. - 2329-4302 .- 2329-4310. ; 7:6
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Tidskriftsartikel (refereegranskat)abstract
- Purpose: Convolutional neural network (CNN) methods have been proposed to quantify lesions in medical imaging. Commonly, more than one imaging examination is available for a patient, but the serial information in these images often remains unused. CNN-based methods have the potential to extract valuable information from previously acquired imaging to better quantify lesions on current imaging of the same patient.Approach: A pretrained CNN can be updated with a patient's previously acquired imaging: patient-specific fine-tuning (FT). In this work, we studied the improvement in performance of lesion quantification methods on magnetic resonance images after FT compared to a pretrained base CNN. We applied the method to two different approaches: the detection of liver metastases and the segmentation of brain white matter hyperintensities (WMH).Results: The patient-specific fine-tuned CNN has a better performance than the base CNN. For the liver metastases, the median true positive rate increases from 0.67 to 0.85. For the WMH segmentation, the mean Dice similarity coefficient increases from 0.82 to 0.87.Conclusions: We showed that patient-specific FT has the potential to improve the lesion quantification performance of general CNNs by exploiting a patient's previously acquired imaging.
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| 232. |
- Jeffries, R. D., et al.
(författare)
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The Gaia-ESO Survey : empirical estimates of stellar ages from lithium equivalent widths (eagles)
- 2023
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Ingår i: Monthly notices of the Royal Astronomical Society. - : Oxford University Press (OUP). - 0035-8711 .- 1365-2966. ; 523:1, s. 802-824
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Tidskriftsartikel (refereegranskat)abstract
- We present an empirical model of age-dependent photospheric lithium depletion, calibrated using a large homogeneously analysed sample of 6200 stars in 52 open clusters, with ages from 2 to 6000 Myr and -0.3 < [Fe/H] < 0.2, observed in the Gaia-ESO spectroscopic survey. The model is used to obtain age estimates and posterior age probability distributions from measurements of the Li i 6708 angstrom equivalent width for individual (pre) main-sequence stars with 3000 < T-eff/K < 6500, a domain where age determination from the HR diagram is either insensitive or highly model-dependent. In the best cases, precisions of 0.1 dex in log age are achievable; even higher precision can be obtained for coeval groups and associations where the individual age probabilities of their members can be combined. The method is validated on a sample of exoplanet-hosting young stars, finding agreement with claimed young ages for some, but not others. We obtain better than 10 per cent precision in age, and excellent agreement with published ages, for seven well-studied young moving groups. The derived ages for young clusters (<1 Gyr) in our sample are also in good agreement with their training ages, and consistent with several published model-insensitive lithium depletion boundary ages. For older clusters, there remain systematic age errors that could be as large as a factor of 2. There is no evidence to link these errors to any strong systematic metallicity dependence of (pre) main-sequence lithium depletion, at least in the range -0.29 < [Fe/H] < 0.18. Our methods and model are provided as software - 'Empirical AGes from Lithium Equivalent widthS' (eagles).
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| 233. |
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| 234. |
- Li, Jian-Yang, et al.
(författare)
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Ejecta from the DART-produced active asteroid Dimorphos
- 2023
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Ingår i: Nature. - : Springer Nature. - 0028-0836 .- 1476-4687. ; 616, s. 452-456
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Tidskriftsartikel (refereegranskat)abstract
- Some active asteroids have been proposed to be formed as a result of impact events1. Because active asteroids are generally discovered by chance only after their tails have fully formed, the process of how impact ejecta evolve into a tail has, to our knowledge, not been directly observed. The Double Asteroid Redirection Test (DART) mission of NASA2, in addition to having successfully changed the orbital period of Dimorphos3, demonstrated the activation process of an asteroid resulting from an impact under precisely known conditions. Here we report the observations of the DART impact ejecta with the Hubble Space Telescope from impact time T + 15 min to T + 18.5 days at spatial resolutions of around 2.1 km per pixel. Our observations reveal the complex evolution of the ejecta, which are first dominated by the gravitational interaction between the Didymos binary system and the ejected dust and subsequently by solar radiation pressure. The lowest-speed ejecta dispersed through a sustained tail that had a consistent morphology with previously observed asteroid tails thought to be produced by an impact4,5. The evolution of the ejecta after the controlled impact experiment of DART thus provides a framework for understanding the fundamental mechanisms that act on asteroids disrupted by a natural impact1,6.
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| 235. |
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| 236. |
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| 237. |
- Martin, DP, et al.
(författare)
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Selection analysis identifies unusual clustered mutational changes in Omicron lineage BA.1 that likely impact Spike function
- 2022
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Ingår i: bioRxiv : the preprint server for biology. - : Cold Spring Harbor Laboratory.
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Tidskriftsartikel (övrigt vetenskapligt/konstnärligt)abstract
- Among the 30 non-synonymous nucleotide substitutions in the Omicron S-gene are 13 that have only rarely been seen in other SARS-CoV-2 sequences. These mutations cluster within three functionally important regions of the S-gene at sites that will likely impact (i) interactions between subunits of the Spike trimer and the predisposition of subunits to shift from down to up configurations, (ii) interactions of Spike with ACE2 receptors, and (iii) the priming of Spike for membrane fusion. We show here that, based on both the rarity of these 13 mutations in intrapatient sequencing reads and patterns of selection at the codon sites where the mutations occur in SARS-CoV-2 and related sarbecoviruses, prior to the emergence of Omicron the mutations would have been predicted to decrease the fitness of any genomes within which they occurred. We further propose that the mutations in each of the three clusters therefore cooperatively interact to both mitigate their individual fitness costs, and adaptively alter the function of Spike. Given the evident epidemic growth advantages of Omicron over all previously known SARS-CoV-2 lineages, it is crucial to determine both how such complex and highly adaptive mutation constellations were assembled within the Omicron S-gene, and why, despite unprecedented global genomic surveillance efforts, the early stages of this assembly process went completely undetected.
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| 238. |
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