| 341. |
- Psaltis, Dimitrios, et al.
(författare)
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Gravitational Test beyond the First Post-Newtonian Order with the Shadow of the M87 Black Hole
- 2020
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Ingår i: Physical Review Letters. - 1079-7114 .- 0031-9007. ; 125:14
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Tidskriftsartikel (refereegranskat)abstract
- The 2017 Event Horizon Telescope (EHT) observations of the central source in M87 have led to the first measurement of the size of a black-hole shadow. This observation offers a new and clean gravitational test of the black-hole metric in the strong-field regime. We show analytically that spacetimes that deviate from the Kerr metric but satisfy weak-field tests can lead to large deviations in the predicted black-hole shadows that are inconsistent with even the current EHT measurements. We use numerical calculations of regular, parametric, non-Kerr metrics to identify the common characteristic among these different parametrizations that control the predicted shadow size. We show that the shadow-size measurements place significant constraints on deviation parameters that control the second post-Newtonian and higher orders of each metric and are, therefore, inaccessible to weak-field tests. The new constraints are complementary to those imposed by observations of gravitational waves from stellar-mass sources.
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| 342. |
- Ran, Liang, et al.
(författare)
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Genome Erosion in a Nitrogen-Fixing Vertically Transmitted Endosymbiotic Multicellular Cyanobacterium
- 2010
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Ingår i: PLOS ONE. - : Public Library of Science (PLoS). - 1932-6203. ; 5:7
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Tidskriftsartikel (refereegranskat)abstract
- Background: An ancient cyanobacterial incorporation into a eukaryotic organism led to the evolution of plastids (chloroplasts) and subsequently to the origin of the plant kingdom. The underlying mechanism and the identities of the partners in this monophyletic event remain elusive.Methodology/Principal Findings: To shed light on this evolutionary process, we sequenced the genome of a cyanobacterium residing extracellularly in an endosymbiosis with a plant, the water-fern Azolla filiculoides Lam. This symbiosis was selected as it has characters which make it unique among extant cyanobacterial plant symbioses: the cyanobacterium lacks autonomous growth and is vertically transmitted between plant generations. Our results reveal features of evolutionary significance. The genome is in an eroding state, evidenced by a large proportion of pseudogenes (31.2%) and a high frequency of transposable elements (,600) scattered throughout the genome. Pseudogenization is found in genes such as the replication initiator dnaA and DNA repair genes, considered essential to free-living cyanobacteria. For some functional categories of genes pseudogenes are more prevalent than functional genes. Loss of function is apparent even within the ‘core’ gene categories of bacteria, such as genes involved in glycolysis and nutrient uptake. In contrast, serving as a critical source of nitrogen for the host, genes related to metabolic processes such as cell differentiation and nitrogen-fixation are well preserved.Conclusions/Significance: This is the first finding of genome degradation in a plant symbiont and phenotypically complex cyanobacterium and one of only a few extracellular endosymbionts described showing signs of reductive genome evolution. Our findings suggest an ongoing selective streamlining of this cyanobacterial genome which has resulted in an organism devoted to nitrogen fixation and devoid of autonomous growth. The cyanobacterial symbiont of Azolla can thus be considered at the initial phase of a transition from free-living organism to a nitrogen-fixing plant entity, a transition process which may mimic what drove the evolution of chloroplasts from a cyanobacterial ancestor.
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| 343. |
- Ren, Hanyu, et al.
(författare)
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Untangling the effects of climate variation and human interference on grassland dynamics in North China
- 2024
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Ingår i: Land Degradation and Development. - 1085-3278 .- 1099-145X. ; 35:1, s. 467-483
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Tidskriftsartikel (refereegranskat)abstract
- Climatic and anthropogenic disturbances play pivotal roles in shaping the dynamics of grassland. Quantifying their impacts on grassland variation is essential to ensure sustainable grassland management. In this study, we employed the Thornthwaite Memorial and Carnegie-Ames-Stanford-approach (CASA) models to investigate the spatiotemporal effects of these two variables on grassland variation in northern China from 2000 to 2016, using the net primary productivity (NPP) as a measure. Our findings reveal that approximately 25.92% of the grassland in northern China experienced degradation, while restored grasslands occupied 45% of the total grassland area. The average grassland actual NPP (ANPP) and human-induced NPP decreased at rates of -0.60 and -5.62 gC m-2 a-1, respectively. Conversely, potential NPP exhibited an upward trend with an average increase of 2.27 gC m-2 a-1. Furthermore, grassland ANPP showed a projected increase in most parts of northern China. Climate change emerged as the primary driver for grassland restoration in Xinjiang, Qinghai, and Inner Mongolia, leading to an increase of 21582.79 Gg C in grassland NPP. In contrast, human activities were the dominant catalysts for grassland degradation, resulting in a reduction of 51932.3 Gg C in grassland NPP. Human-induced grassland degradation was ubiquitous in northwest and northeast China. With the exception of slope grassland, climate change primarily influenced the restoration of most grassland types, while human activities were the primary cause of degradation. Our analysis indicated a strong correlation between temperature and grassland degradation, while precipitation played a pivotal role in grassland restoration in northern China. Human interference demonstrated both positive and negative impacts on grassland changes. In conclusion, the increase in precipitation and the implementation of ecological restoration plans have effectively promoted the restoration of grasslands in northern China.
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| 344. |
- Robbins, Hilary A., et al.
(författare)
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Design and methodological considerations for biomarker discovery and validation in the Integrative Analysis of Lung Cancer Etiology and Risk (INTEGRAL) Program
- 2023
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Ingår i: Annals of Epidemiology. - : Elsevier. - 1047-2797 .- 1873-2585. ; 77, s. 1-12
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Tidskriftsartikel (refereegranskat)abstract
- The Integrative Analysis of Lung Cancer Etiology and Risk (INTEGRAL) program is an NCI-funded initiative with an objective to develop tools to optimize low-dose CT (LDCT) lung cancer screening. Here, we describe the rationale and design for the Risk Biomarker and Nodule Malignancy projects within INTEGRAL. The overarching goal of these projects is to systematically investigate circulating protein markers to include on a panel for use (i) pre-LDCT, to identify people likely to benefit from screening, and (ii) post-LDCT, to differentiate benign versus malignant nodules. To identify informative proteins, the Risk Biomarker project measured 1161 proteins in a nested-case control study within 2 prospective cohorts (n = 252 lung cancer cases and 252 controls) and replicated associations for a subset of proteins in 4 cohorts (n = 479 cases and 479 controls). Eligible participants had a current or former history of smoking and cases were diagnosed up to 3 years following blood draw. The Nodule Malignancy project measured 1078 proteins among participants with a heavy smoking history within four LDCT screening studies (n = 425 cases diagnosed up to 5 years following blood draw, 430 benign-nodule controls, and 398 nodule-free controls). The INTEGRAL panel will enable absolute quantification of 21 proteins. We will evaluate its performance in the Risk Biomarker project using a case-cohort study including 14 cohorts (n = 1696 cases and 2926 subcohort representatives), and in the Nodule Malignancy project within five LDCT screening studies (n = 675 cases, 680 benign-nodule controls, and 648 nodule-free controls). Future progress to advance lung cancer early detection biomarkers will require carefully designed validation, translational, and comparative studies.
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| 345. |
- Satapathy, Kaushik, et al.
(författare)
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The Variability of the Black Hole Image in M87 at the Dynamical Timescale
- 2022
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Ingår i: Astrophysical Journal. - : American Astronomical Society. - 1538-4357 .- 0004-637X. ; 925:1
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Tidskriftsartikel (refereegranskat)abstract
- The black hole images obtained with the Event Horizon Telescope (EHT) are expected to be variable at the dynamical timescale near their horizons. For the black hole at the center of the M87 galaxy, this timescale (5-61 days) is comparable to the 6 day extent of the 2017 EHT observations. Closure phases along baseline triangles are robust interferometric observables that are sensitive to the expected structural changes of the images but are free of station-based atmospheric and instrumental errors. We explored the day-to-day variability in closure-phase measurements on all six linearly independent nontrivial baseline triangles that can be formed from the 2017 observations. We showed that three triangles exhibit very low day-to-day variability, with a dispersion of similar to 3 degrees-5 degrees. The only triangles that exhibit substantially higher variability (similar to 90 degrees-180 degrees) are the ones with baselines that cross the visibility amplitude minima on the u-v plane, as expected from theoretical modeling. We used two sets of general relativistic magnetohydrodynamic simulations to explore the dependence of the predicted variability on various black hole and accretion-flow parameters. We found that changing the magnetic field configuration, electron temperature model, or black hole spin has a marginal effect on the model consistency with the observed level of variability. On the other hand, the most discriminating image characteristic of models is the fractional width of the bright ring of emission. Models that best reproduce the observed small level of variability are characterized by thin ring-like images with structures dominated by gravitational lensing effects and thus least affected by turbulence in the accreting plasmas.
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| 346. |
- Satizabal, Claudia L., et al.
(författare)
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Genetic architecture of subcortical brain structures in 38,851 individuals
- 2019
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Ingår i: Nature Genetics. - : Nature Publishing Group. - 1061-4036 .- 1546-1718. ; 51:11, s. 1624-
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Tidskriftsartikel (refereegranskat)abstract
- Subcortical brain structures are integral to motion, consciousness, emotions and learning. We identified common genetic variation related to the volumes of the nucleus accumbens, amygdala, brainstem, caudate nucleus, globus pallidus, putamen and thalamus, using genome-wide association analyses in almost 40,000 individuals from CHARGE, ENIGMA and UK Biobank. We show that variability in subcortical volumes is heritable, and identify 48 significantly associated loci (40 novel at the time of analysis). Annotation of these loci by utilizing gene expression, methylation and neuropathological data identified 199 genes putatively implicated in neurodevelopment, synaptic signaling, axonal transport, apoptosis, inflammation/infection and susceptibility to neurological disorders. This set of genes is significantly enriched for Drosophila orthologs associated with neurodevelopmental phenotypes, suggesting evolutionarily conserved mechanisms. Our findings uncover novel biology and potential drug targets underlying brain development and disease.
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| 347. |
- Schoch, Conrad L., et al.
(författare)
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Finding needles in haystacks: linking scientific names, reference specimens and molecular data for Fungi
- 2014
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Ingår i: Database: The Journal of Biological Databases and Curation. - : Oxford University Press (OUP). - 1758-0463. ; 2014:bau061, s. 1-21
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Tidskriftsartikel (refereegranskat)abstract
- DNA phylogenetic comparisons have shown that morphology-based species recognition often underestimates fungal diversity. Therefore, the need for accurate DNA sequence data, tied to both correct taxonomic names and clearly annotated specimen data, has never been greater. Furthermore, the growing number of molecular ecology and microbiome projects using high-throughput sequencing require fast and effective methods for en masse species assignments. In this article, we focus on selecting and re-annotating a set of marker reference sequences that represent each currently accepted order of Fungi. The particular focus is on sequences from the internal transcribed spacer region in the nuclear ribosomal cistron, derived from type specimens and/or ex-type cultures. Re-annotated and verified sequences were deposited in a curated public database at the National Center for Biotechnology Information (NCBI), namely the RefSeq Targeted Loci (RTL) database, and will be visible during routine sequence similarity searches with NR_prefixed accession numbers. A set of standards and protocols is proposed to improve the data quality of new sequences, and we suggest how type and other reference sequences can be used to improve identification of Fungi.
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| 348. |
- Shao, Wen-Ze, et al.
(författare)
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Motion Deblurring Using Non-stationary Image Modeling
- 2015
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Ingår i: Journal of Mathematical Imaging and Vision. - : Springer Science and Business Media LLC. - 0924-9907 .- 1573-7683. ; 52:2, s. 234-248
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Tidskriftsartikel (refereegranskat)abstract
- It is well-known that shaken cameras or mobile phones during exposure usually lead to motion blurry photographs. Therefore, camera shake deblurring or motion deblurring is required and requested in many practical scenarios. The contribution of this paper is the proposal of a simple yet effective approach for motion blur kernel estimation, i.e., blind motion deblurring. Though there have been proposed severalmethods formotion blur kernel estimation in the literature, we impose a type of non-stationary Gaussian prior on the gradient fields of sharp images, in order to automatically detect and purse the salient edges of images as the important clues to blur kernel estimation. On one hand, the prior is able to promote sparsity inherited in the non-stationarity of the precision parameters (inverse of variances). On the other hand, since the prior is in a Gaussian form, there exists a great possibility of deducing a conceptually simple and computationally tractable inference scheme. Specifically, the well-known expectation-maximization algorithm is used to alternatingly estimate the motion blur kernels, the salient edges of images as well as the precision parameters in the image prior. In difference from many existing methods, no hyperpriors are imposed on any parameters in this paper; there are not any pre-processing steps involved in the proposed method, either, such as explicit suppression of random noise or prediction of salient edge structures. With estimated motion blur kernels, the deblurred images are finally generated using an off-the-shelf non-blind deconvolution method proposed by Krishnan and Fergus (Adv Neural Inf Process Syst 22:1033-1041, 2009). The rationality and effectiveness of our proposed method have been well demonstrated by the experimental results on both synthetic and realistic motion blurry images, showing state-of-the-art blind motion deblurring performance of the proposed approach in the term of quantitative metric as well as visual perception.
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| 349. |
- Shi, Yu-Sheng, et al.
(författare)
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Limonoids from Citrus : Chemistry, anti-tumor potential, and other bioactivities
- 2020
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Ingår i: Journal of Functional Foods. - : ELSEVIER. - 1756-4646 .- 2214-9414. ; 75
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Tidskriftsartikel (refereegranskat)abstract
- Citrus limonoids are tetranortriterpenoids compounds mainly found in oranges, lemons, grapefruits, and other fruits of Citrus. They are proved to be the leading cause of bitterness in Citrus fruits and are mainly consumed for therapeutic purposes and as food. Numerous studies have focused on Citrus limonoids and intend to develop new chemotherapeutic or complementary medicine in recent years. Citrus limonoids showed various bioactivities such as anti-tumor, antioxidative, anti-inflammatory, anti-neurological diseases, immunomodulatory, anti -insect, anti-bacteria, antiviral activities, etc. This review summarized limonoids from Citrus to date, along with their chemical structures and biological activities with a particular focus on their anti-tumor potential.
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| 350. |
- Siegbahn, Per E. M., 1945-, et al.
(författare)
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The energetics of N2 reduction by vanadium containing nitrogenase
- 2024
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Ingår i: Physical Chemistry, Chemical Physics - PCCP. - 1463-9076 .- 1463-9084. ; 26:3, s. 1684-1695
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Tidskriftsartikel (refereegranskat)abstract
- The main class of nitrogenases has a molybdenum in its cofactor. A mechanism for Mo-nitrogenase has recently been described. In the present study, another class of nitrogenases has been studied, the one with a vanadium instead of a molybdenum in its cofactor. It is generally believed that these classes use the same general mechanism to activate nitrogen. The same methodology has been used here as the one used for Mo-nitrogenase. N2 activation is known to occur after four reductions in the catalytic cycle, in the E4 state. The main features of the mechanism for Mo-nitrogenase found in the previous study are an activation process in four steps prior to catalysis, the release of a sulfide during the activation steps and the formation of H2 from two hydrides in E4, just before N2 is activated. The same features have been found here for V-nitrogenase. A difference is that five steps are needed in the activation process, which explains why the ground state of V-nitrogenase is a triplet (even number) and the one for Mo-nitrogenase is a quartet (odd number). The reason an additional step is needed for V-nitrogenase is that V3+ can be reduced to V2+, in contrast to the case for Mo3+ in Mo-nitrogenase. The fact that V3+ is Jahn–Teller active has important consequences. N2H2 is formed in E4 with reasonably small barriers.
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