| 1. |
- Miliotis, Tasso, et al.
(author)
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Protein identification platform utilizing micro dispensing technology interfaced to matrix-assisted laser desorption ionization time-of-flight mass spectrometry
- 2000
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In: Journal of Chromatography A. - 0021-9673. ; 886:1-2, s. 99-110
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Journal article (peer-reviewed)abstract
- An integrated protein microcharacterization/identification platform has been developed. The system has been designed to allow a high flexibility in order to tackle challenging analytical problems. The platform comprises a cooled microautosampler, an integrated system for microcolumn HPLC, and a capillary reversed-phase column that is interfaced to matrix-assisted laser desorption ionization time-of-flight mass spectrometry (MALDI-TOF-MS) system via a low internal volume flow-through microdispenser. The chromatographic separation is continuously transferred onto a MALDI target plate as discrete spots as the dispenser ejects bursts of droplets of the column effluent in a precise array pattern. A refrigerated microfraction collector was coupled to the outlet of the flow-through microdispenser enabling enrichment and re-analysis of interesting fractions. The use of target plates pre-coated with matrix simplified and increased the robustness of the system. By including a separation step prior to the MALDI-TOF-MS analysis and hereby minimizing suppression effects allowed us to obtain higher sequence coverage of proteins compared to conventional MALDI sample preparation methodology. Additionally, synthetic peptides corresponding to autophosphorylated forms of the tryptic fragment 485-496 (ALGADDSYYTAR) of tyrosine kinase ZAP-70 were identified at sensitivities reaching 150 amol. Copyright (C) 2000 Elsevier Science B.V.
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| 2. |
- Torto, Nelson, et al.
(author)
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On-line quantitation of enzymatic mannan hydrolysates in small-volume bioreactors by microdialysis sampling and column liquid chromatography-integrated pulsed electrochemical detection
- 1996
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In: Journal of Chromatography A. - : Elsevier BV. - 0021-9673. ; 725:1, s. 165-175
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Journal article (peer-reviewed)abstract
- Quantitative aspects of on-line microdialysis sampling are investigated with respect to sampling in small-volume bioreactors. Three modes of microdialysis sampling; continuous-flow microdialysis sampling (CFMS), stopped-flow microdialysis sampling with continuous stirring, and stopped-flow microdialysis sampling with stopped stirring were investigated as a possible means for studying bioprocesses. The hydrolytic properties of a well characterised endomannanase from Aspergillus niger were studied using 0.01% ivory nut mannan as substrate in a 5-ml reaction vessel. On-line sampling was achieved using a microdialysis probe fitted with an SPS 6005 membrane. Stopped-flow microdialysis sampling was found to give the least analyte depletion and thus used for quantitation of the enzymatic hydrolysates. However, CFMS can be used when analyte depletion is not significant (large-volume reactor). Hydrolysis of ivory nut mannan gave mainly mannobiose and mannotriose in almost equal amounts, which is consistent with an endo-wise hydrolysis. The concentrations of mannose and mannopentaose did not change significantly over the monitoring period, however, that of mannotetraose increased gradually up to 11 h where it starts to decrease.
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| 3. |
- Welinder, Charlotte, et al.
(author)
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Restricted access chromatographic sample preparation of low mass proteins expressed in human fibroblast cells for proteomics analysis
- 2001
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In: Journal of Chromatography A. - 0021-9673. ; 909:2, s. 279-288
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Journal article (peer-reviewed)abstract
- Two-dimensional electrophoresis and modern image analysis systems have made it possible to study protein expression and regulation of proteins in biological systems. Proteins in the molecular mass region of 20-120 kDa are well investigated and described. However, proteins with masses below 20 kDa are the least investigated as they are rarely seen on 2D-PAGE due to fast migrations in the electric field and lack of staining efficiency. This paper describes a technique that enriches proteins in the lower mass region using solid-phase extraction. The purification step is carried out using C18 functionalised "restricted access" affinity chromatography whereby simultaneous trace enrichment and sample clean up is achieved. In this study expression patterns of TGF-beta stimulated and non-stimulated fibroblasts were compared after the solid-phase fractionation procedure. An increased expression pattern was obtained whereby 400 protein spots could be detected by image analysis in the <20-kDa region. Out of these, specific regulations of 14 spots were found by quantitative image analysis and spots of interest were identified with MALDI TOF-MS. The regulated and identified proteins were triosephosphate isomerase, cofilin and heat shock 27-kDa protein.
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| 4. |
- Önnerfjord, Patrik, et al.
(author)
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High sample throughput flow immunoassay utilising restricted access columns for the separation of bound and free label
- 1998
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In: Journal of Chromatography A. - 0021-9673. ; 800:2, s. 219-230
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Journal article (peer-reviewed)abstract
- A flow immunodetection system with high sample throughput capacity is described for the screening of various analytes. The immunochemical detection principle is based on the chromatographic separation of the formed immunocomplex (AbAg or AbAg*) and the free antigen (Ag) by a restricted access (RA) column, utilising size-exclusion and reversed-phase mechanism. A fluorescein labelled analyte (Ag*) was used in the competitive assay format with fluorescence detection. The speed and simplicity of the assay were the greatest advantages, allowing measurement of the analyte to be carried out in less than 1 min. The biocompatibility and capacity of the restricted access material allowed multiple injections of up to 5000, without any breakthrough of the fluorescent tracer molecule and thus need for regeneration. The flow immunoassay was developed using the well-known atrazine herbicide and some transformation products as model compounds, due to their human toxicity and widespread use. The sample throughput was 80 samples per hour and the detection limits were 1.4 nM (300 pg/ml) for atrazine (Ab I) and 2.3 nM (500 pg/ml) for the sum of triazines (Ab II-III). Different sample matrices, PBS buffer, creek water, and urine were successfully applied in the flow system without the need for any sample handling step. For plasma samples an additional clean-up step using solid-phase extraction had to be included. The resulting detection limits for atrazine in plasma and water samples using this clean-up and trace enrichment procedure were found to be 2 ng/ml and 20 pg/ml, respectively. The analysis could be performed at a sample throughput rate of 400 per 6-h working shift.
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| 5. |
- Marko-Varga, György, et al.
(author)
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Microscale protein expression profiling during disease evolvement
- 2004
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In: Journal of Chromatography A. - : Elsevier BV. - 0021-9673. ; 1053:1-2, s. 279-290
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Journal article (peer-reviewed)abstract
- Advances in technology, such as laser capture microdissection (LCM), have allowed for the specific sampling of cells within their natural functional micro-environment. In model systems using LCM, we have studied the global protein expression profiles of airway epithelial cells during a response to allergen provocation. Bronchial epithelial cells were first identified and phenotyped histologically in snap frozen lung samples of experimentally sensitised mice. Consecutive thin sections of whole lung were then sampled using preparative LCM procedures. Lysates of the captured epithelium (7500 shots) or whole lung were prepared for two-dimensional gel electrophoretic separation and 1400 protein spots were annotated by image analysis. Protein identities were established by matching peptide masses detected using matrix-assisted laser desorption ionization time-of-flight MS as well as electrospray ionization MS-MS sequencing. Using the Mascot database of protein/peptide identities high significance scores in terms of sequence coverage (range 22-70%) and number of peptides (range 7-22 peptides/protein) were obtained for approximately 500 proteins, with examples listed in Table 1. In quantitative terms, the LCM procedure allows the statistical sampling of singular populations of cells distributed throughout tissues and organs. The absolute number of cells required for "entry level" measurements of protein profiles will vary over an order of magnitude depending on the physical size and frequency of the cells being studied within each biological compartment as well as the dynamic range of the proteins being measured, and the absolute limits of detection within the technologies being employed. (C) 2004 Elsevier B.V. All rights reserved.
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