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1.
  • Bustamante, Mariana, et al. (författare)
  • Automatic Time-Resolved Cardiovascular Segmentation of 4D Flow MRI Using Deep Learning
  • 2023
  • Ingår i: Journal of Magnetic Resonance Imaging. - Hoboken, NJ, United States : John Wiley & Sons. - 1053-1807 .- 1522-2586. ; 57:1, s. 191-203
  • Tidskriftsartikel (refereegranskat)abstract
    • Background Segmenting the whole heart over the cardiac cycle in 4D flow MRI is a challenging and time-consuming process, as there is considerable motion and limited contrast between blood and tissue.Purpose To develop and evaluate a deep learning-based segmentation method to automatically segment the cardiac chambers and great thoracic vessels from 4D flow MRI. Study Type Retrospective.Subjects A total of 205 subjects, including 40 healthy volunteers and 165 patients with a variety of cardiac disorders were included. Data were randomly divided into training (n = 144), validation (n = 20), and testing (n = 41) sets.Field Strength/Sequence A 3 T/time-resolved velocity encoded 3D gradient echo sequence (4D flow MRI).Assessment A 3D neural network based on the U-net architecture was trained to segment the four cardiac chambers, aorta, and pulmonary artery. The segmentations generated were compared to manually corrected atlas-based segmentations. End-diastolic (ED) and end-systolic (ES) volumes of the four cardiac chambers were calculated for both segmentations.Statistical tests Dice score, Hausdorff distance, average surface distance, sensitivity, precision, and miss rate were used to measure segmentation accuracy. Bland-Altman analysis was used to evaluate agreement between volumetric parameters.Results The following evaluation metrics were computed: mean Dice score (0.908 +/- 0.023) (mean +/- SD), Hausdorff distance (1.253 +/- 0.293 mm), average surface distance (0.466 +/- 0.136 mm), sensitivity (0.907 +/- 0.032), precision (0.913 +/- 0.028), and miss rate (0.093 +/- 0.032). Bland-Altman analyses showed good agreement between volumetric parameters for all chambers. Limits of agreement as percentage of mean chamber volume (LoA%), left ventricular: 9.3%, 13.5%, left atrial: 12.4%, 16.9%, right ventricular: 9.9%, 15.6%, and right atrial: 18.7%, 14.4%; for ED and ES, respectively.Data conclusion The addition of this technique to the 4D flow MRI assessment pipeline could expedite and improve the utility of this type of acquisition in the clinical setting. Evidence Level 4Technical Efficacy Stage 1
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2.
  • Bustamante, Mariana, et al. (författare)
  • Using Deep Learning to Emulate the Use of an External Contrast Agent in Cardiovascular 4D Flow MRI
  • 2021
  • Ingår i: Journal of Magnetic Resonance Imaging. - : Wiley. - 1053-1807 .- 1522-2586. ; 54:3, s. 777-786
  • Tidskriftsartikel (refereegranskat)abstract
    • Background Although contrast agents would be beneficial, they are seldom used in four-dimensional (4D) flow magnetic resonance imaging (MRI) due to potential side effects and contraindications. Purpose To develop and evaluate a deep learning architecture to generate high blood-tissue contrast in noncontrast 4D flow MRI by emulating the use of an external contrast agent. Study Type Retrospective. Subjects Of 222 data sets, 141 were used for neural network (NN) training (69 with and 72 without contrast agent). Evaluation was performed on the remaining 81 noncontrast data sets. Field Strength/Sequences Gradient echo or echo-planar 4D flow MRI at 1.5 T and 3 T. Assessment A cyclic generative adversarial NN was trained to perform image translation between noncontrast and contrast data. Evaluation was performed quantitatively using contrast-to-noise ratio (CNR), signal-to-noise ratio (SNR), structural similarity index (SSIM), mean squared error (MSE) of edges, and Dice coefficient of segmentations. Three observers performed a qualitative assessment of blood-tissue contrast, noise, presence of artifacts, and image structure visualization. Statistical Tests The Wilcoxon rank-sum test evaluated statistical significance. Kendalls concordance coefficient assessed interobserver agreement. Results Contrast in the regions of interest (ROIs) in the NN enhanced images increased by 88%, CNR increased by 63%, and SNR improved by 48% (all P < 0.001). The SSIM was 0.82 +/- 0.01, and the MSE of edges was 0.09 +/- 0.01 (range [0,1]). Segmentations based on the generated images resulted in a Dice similarity increase of 15.25%. The observers managed to differentiate between contrast MR images and our results; however, they preferred the NN enhanced images in 76.7% of cases. This percentage increased to 93.3% for phase-contrast MR angiograms created from the NN enhanced data. Visual grading scores were blood-tissue contrast = 4.30 +/- 0.74, noise = 3.12 +/- 0.98, and presence of artifacts = 3.63 +/- 0.76. Image structures within and without the ROIs resulted in scores of 3.42 +/- 0.59 and 3.07 +/- 0.71, respectively (P < 0.001). Data Conclusion The proposed approach improves blood-tissue contrast in MR images and could be used to improve data quality, visualization, and postprocessing of cardiovascular 4D flow data. Evidence Level 3 Technical Efficacy Stage 1
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3.
  • Cibis, Merih, et al. (författare)
  • Creating Hemodynamic Atlases of Cardiac 4D Flow MRI
  • 2017
  • Ingår i: Journal of Magnetic Resonance Imaging. - : WILEY. - 1053-1807 .- 1522-2586. ; 46:5, s. 1389-1399
  • Tidskriftsartikel (refereegranskat)abstract
    • Purpose: Hemodynamic atlases can add to the pathophysiological understanding of cardiac diseases. This study proposes a method to create hemodynamic atlases using 4D Flow magnetic resonance imaging (MRI). The method is demonstrated for kinetic energy (KE) and helicity density (Hd). Materials and Methods: Thirteen healthy subjects underwent 4D Flow MRI at 3T. Phase-contrast magnetic resonance cardioangiographies (PC-MRCAs) and an average heart were created and segmented. The PC-MRCAs, KE, and Hd were nonrigidly registered to the average heart to create atlases. The method was compared with 1) rigid, 2) affine registration of the PC-MRCAs, and 3) affine registration of segmentations. The peak and mean KE and Hd before and after registration were calculated to evaluate interpolation error due to nonrigid registration. Results: The segmentations deformed using nonrigid registration overlapped (median: 92.3%) more than rigid (23.1%, P amp;lt; 0.001), and affine registration of PC-MRCAs (38.5%, P amp;lt; 0.001) and affine registration of segmentations (61.5%, P amp;lt; 0.001). The peak KE was 4.9 mJ using the proposed method and affine registration of segmentations (P50.91), 3.5 mJ using rigid registration (P amp;lt; 0.001), and 4.2 mJ using affine registration of the PC-MRCAs (P amp;lt; 0.001). The mean KE was 1.1 mJ using the proposed method, 0.8 mJ using rigid registration (P amp;lt; 0.001), 0.9 mJ using affine registration of the PC-MRCAs (P amp;lt; 0.001), and 1.0 mJ using affine registration of segmentations (P50.028). The interpolation error was 5.262.6% at mid-systole, 2.863.8% at early diastole for peak KE; 9.669.3% at mid-systole, 4.064.6% at early diastole, and 4.964.6% at late diastole for peak Hd. The mean KE and Hd were not affected by interpolation. Conclusion: Hemodynamic atlases can be obtained with minimal user interaction using nonrigid registration of 4D Flow MRI. Level of Evidence: 2 Technical Efficacy: Stage 1
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4.
  • Dyverfeldt, Petter, 1980-, et al. (författare)
  • Assessment of fluctuating velocities in disturbed cardiovascular blood flow : in vivo feasibility of generalized phase-contrast MRI
  • 2008
  • Ingår i: Journal of Magnetic Resonance Imaging. - : Wiley. - 1053-1807 .- 1522-2586. ; 28:3, s. 655-663
  • Tidskriftsartikel (refereegranskat)abstract
    • PurposeTo evaluate the feasibility of generalized phase-contrast magnetic resonance imaging (PC-MRI) for the noninvasive assessment of fluctuating velocities in cardiovascular blood flow.Materials and MethodsMultidimensional PC-MRI was used in a generalized manner to map mean flow velocities and intravoxel velocity standard deviation (IVSD) values in one healthy aorta and in three patients with different cardiovascular diseases. The acquired data were used to assess the kinetic energy of both the mean (MKE) and the fluctuating (TKE) velocity field.ResultsIn all of the subjects, both mean and fluctuating flow data were successfully acquired. The highest TKE values in the patients were found at sites characterized by abnormal flow conditions. No regional increase in TKE was found in the normal aorta.ConclusionPC-MRI IVSD mapping is able to detect flow abnormalities in a variety of human cardiovascular conditions and shows promise for the quantitative assessment of turbulence. This approach may assist in clarifying the role of disturbed hemodynamics in cardiovascular diseases.
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5.
  • Dyverfeldt, Petter, et al. (författare)
  • Hemodynamic aspects of mitral regurgitation assessed by generalized phase-contrast MRI
  • 2011
  • Ingår i: Journal of Magnetic Resonance Imaging. - : John Wiley and Sons. - 1053-1807 .- 1522-2586. ; 33:3, s. 582-588
  • Tidskriftsartikel (refereegranskat)abstract
    • Purpose: Mitral regurgitation creates a high velocity jet into the left atrium (LA), contributing both volume andpressure; we hypothesized that the severity of regurgitation would be reflected in the degree of LA flowdistortion.Material and Methods: Three-dimensional cine PC-MRI was applied to determine LA flow patterns andturbulent kinetic energy (TKE) in seven subjects (five patients with posterior mitral leaflet prolapse, two normalsubjects). In addition, the regurgitant volume and the time-velocity profiles in the pulmonary veins weremeasured.Results: The LA flow in the mitral regurgitation patients was highly disturbed with elevated values of TKE.Peak TKE occurred consistently at late systole. The total LA TKE was closely related to the regurgitant volume.LA flow patterns were characterized by a pronounced vortex in proximity to the regurgitant jet. In some patients,pronounced discordances were observed between individual pulmonary venous inflows, but these could not berelated to the direction of the flow jet or parameters describing global LA hemodynamics.Conclusion: PC-MRI permits investigations of atrial and pulmonary vein flow patterns and TKE in significantmitral regurgitation, reflecting the impact of the highly disturbed blood flow that accompanies this importantvalve disease.
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6.
  • Ebbers, Tino, et al. (författare)
  • Improving Computation of Cardiovascular Relative Pressure Fields From Velocity MRI
  • 2009
  • Ingår i: JOURNAL OF MAGNETIC RESONANCE IMAGING. - : Wiley. - 1053-1807 .- 1522-2586. ; 30:1, s. 54-61
  • Tidskriftsartikel (refereegranskat)abstract
    • Purpose: To evaluate a multigrid-based solver for the pressure Poisson equation (PPE) with Galerkin coarsening, which works directly on the specified domain, for the computation of relative pressure fields from velocity MRI data. Materials and Methods: We compared the proposed structure-defined Poisson solver to other popular Poisson solvers working on unmodified rectangular and modified quasirectangular domains using synthetic and in vitro phantoms in which the mathematical solution of the pressure field is known, as well as on in vivo MRI velocity measurements of aortic blood flow dynamics. Results: All three PPE solvers gave accurate results for convex computational domains. Using a rectangular or quasirectangular domain on a more complicated domain, like a c-shape, revealed a systematic underestimation of the pressure amplitudes, while the proposed PPE solver, working directly on the specified domain, provided accurate estimates of the relative pressure fields. Conclusion: Popular iterative approaches with quasirectangular computational domains can lead to significant systematic underestimation of the pressure amplitude. We suggest using a multigrid-based PPE solver with Galerkin coarsening, which works directly on the structure-defined computational domain. This solver provides accurate estimates of the relative pressure fields for both simple and complex geometries with additional significant improvements with respect to execution speed.
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7.
  • Escobar Kvitting, John-Peder, et al. (författare)
  • In Vitro Assessment of Flow Patterns and Turbulence Intensity in Prosthetic Heart Valves Using Generalized Phase-Contrast MRI
  • 2010
  • Ingår i: JOURNAL OF MAGNETIC RESONANCE IMAGING. - : John Wiley and Sons, Ltd. - 1053-1807 .- 1522-2586. ; 31:5, s. 1075-1080
  • Tidskriftsartikel (refereegranskat)abstract
    • Purpose: To assess in vitro the three-dimensional mean velocity field and the extent and degree of turbulence intensity (TI) in different prosthetic heart valves using a generalization of phase-contrast MRI (PC-MRI). Materials and Methods: Four 27-mm aortic valves (Bjork-Shiley Monostrut tilting-disc, St. Jude Medical Standard bileaflet, Medtronic Mosaic stented and Freestyle stentless porcine valve) were tested under steady inflow conditions in a Plexiglas phantom. Three-dimensional PC-MRI data were acquired to measure the mean velocity field and the turbulent kinetic energy (TKE), a direction-independent measure of TI. Results: Velocity and TI estimates could be obtained up and downstream of the valves, except where metallic structure in the valves caused signal void. Distinct differences in the location, extent, and peak values of velocity and TI were observed between the valves tested. The maximum values of TKE varied between the different valves: tilting disc, 100 J/m(3); bileaflet, 115 J/m(3); stented, 200 J/m(3); stentless, 145 J/m(3). Conclusion: The TI downstream from a prosthetic heart valve is dependent on the specific valve design. Generalized PC-MRI can be used to quantify velocity and TI downstream from prosthetic heart valves, which may allow assessment of these aspects of prosthetic valvular function in postoperative patients.
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8.
  • Fredriksson, Alexandru Grigorescu, et al. (författare)
  • 4D flow MRI can detect subtle right ventricular dysfunction in primary left ventricular disease.
  • 2016
  • Ingår i: Journal of Magnetic Resonance Imaging. - : Wiley-Blackwell. - 1053-1807 .- 1522-2586. ; 43:3, s. 558-565
  • Tidskriftsartikel (refereegranskat)abstract
    • PURPOSE: To investigate whether 4D flow magnetic resonance imaging (MRI) can detect subtle right ventricular (RV) dysfunction in primary left ventricular (LV) disease.MATERIALS AND METHODS: 4D flow and morphological 3T MRI data were acquired in 22 patients with mild ischemic heart disease who were stratified into two groups based on LV end-diastolic volume index (EDVI): lower-LVEDVI and higher-LVEDVI, as well as in 11 healthy controls. The RV volume was segmented at end-diastole (ED) and end-systole (ES). Pathlines were emitted from the ED volume and traced forwards and backwards in time to ES. The blood volume was separated into flow components. The Direct Flow (DF) component was defined as RV inflow passing directly to outflow. The kinetic energy (KE) of the DF component was calculated. Echocardiographic conventional RV indices were also assessed.RESULTS: The higher-LVEDVI group had larger LVEDVI and lower LV ejection fraction (98 ± 32 ml/m(2) ; 48 ± 13%) compared to the healthy (67 ± 12, P = 0.002; 64 ± 7, P < 0.001) and lower-LVEDI groups (62 ± 10; 68 ± 7, both P < 0.001). The RV 4D flow-specific measures "DF/EDV volume-ratio" and "DF/EDV KE-ratio at ED" were lower in the higher-LVEDVI group (38 ± 5%; 52 ± 6%) compared to the healthy (44 ± 6; 65 ± 7, P = 0.018 and P < 0.001) and lower-LVEDVI groups (44 ± 6; 64 ± 7, P = 0.011 and P < 0.001). There was no difference in any of the conventional MRI and echocardiographic RV indices between the three groups.CONCLUSION: We found that in primary LV disease mild impairment of RV function can be detected by 4D flow-specific measures, but not by the conventional MRI and echocardiographic indices. J. Magn. Reson. Imaging 2015.
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9.
  • Fredriksson, Alexandru Grigorescu, et al. (författare)
  • Turbulent kinetic energy in the right ventricle : Potential MR marker for risk stratification of adults with repaired Tetralogy of Fallot
  • 2018
  • Ingår i: Journal of Magnetic Resonance Imaging. - Hoboken : John Wiley & Sons. - 1053-1807 .- 1522-2586. ; 47:4, s. 1043-1053
  • Tidskriftsartikel (refereegranskat)abstract
    • Purpose: To assess right ventricular (RV) turbulent kinetic energy (TKE) in patients with repaired Tetralogy of Fallot (rToF) and a spectrum of pulmonary regurgitation (PR), as well as to investigate the relationship between these 4D flow markers and RV remodeling.Materials and Methods: Seventeen patients with rToF and 10 healthy controls were included in the study. Patients were divided into two groups based on PR fraction: one lower PR fraction group (11%) and one higher PR fraction group (>11%). Field strength/sequences: 3D cine phase contrast (4D flow), 2D cine phase contrast (2D flow), and balanced steady-state free precession (bSSFP) at 1.5T. Assessment: The RV volume was segmented in the morphologic short-axis images and TKE parameters were computed inside the segmented RV volume throughout diastole. Statistical tests: One-way analysis of variance with Bonferroni post-hoc test; unpaired t-test; Pearson correlation coefficients; simple and stepwise multiple regression models; intraclass correlation coefficient (ICC).Results: The higher PR fraction group had more remodeled RVs (140 6 25 vs. 107 6 22 [lower PR fraction, P < 0.01] and 93 6 15 ml/m2[healthy, P < 0.001] for RV end-diastolic volume index [RVEDVI]) and higher TKE values (5.95 6 3.15 vs. 2.23 6 0.81 [lower PR fraction, P < 0.01] and 1.91 6 0.78 mJ [healthy, P < 0.001] for Peak Total RV TKE). Multiple regression analysis between RVEDVI and 4D/2D flow parameters showed that Peak Total RV TKE was the strongest predictor of RVEDVI (R25 0.47, P 5 0.002).Conclusion: The 4D flow-specific TKE markers showed a slightly stronger association with RV remodeling than conventional 2D flow PR parameters. These results suggest novel hemodynamic aspects of PR in the development of late complications after ToF repair.
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10.
  • Haraldsson, Henrik, 1977-, et al. (författare)
  • Improved estimation and visualization of two-dimensional myocardial strain rate using MR velocity mapping
  • 2008
  • Ingår i: Journal of Magnetic Resonance Imaging. - : Wiley. - 1053-1807 .- 1522-2586. ; 28:3, s. 604-611
  • Tidskriftsartikel (refereegranskat)abstract
    • Purpose: To estimate regional myocardial strain rate, with reduced sensitivity to noise and velocities outside the region of interest, and provide a visualization of the spatial variation of the obtained tensor field within the myocardium. Materials and Methods: Myocardial velocities were measured using two-dimensional phase contrast velocity mapping. Velocity gradients were estimated using normalized convolution and the calculated 2D strain rate tensor field was visualized using a glyph representation. Validation utilized a numerical phantom with known strain rate distribution. Strain rate glyph visualizations were created for normal myocardium in both systole and diastole and compared to a patient with an anteroseptal infarction. Results: In the phantom study the strain rate calculated with normalized convolution showed a very good agreement with the analytic solution, while traditional methods for gradient estimation were shown to be sensitive to both noise and surrounding velocity data. Normal myocardium showed a homogenous strain rate distribution, while a heterogeneous strain rate can be clearly seen in the patient data. Conclusion: The proposed approach for quantification and visualization of the regional myocardial strain rate can provide an objective measure of regional myocardial contraction and relaxation that may be valuable for the assessment of myocardial heart disease. © 2008 Wiley-Liss, Inc.
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