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- Chen, J, et al.
(författare)
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A simple method for reconstructing a high-quality NDVI time-series data set based on the Savitzky-Golay filter
- 2004
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Ingår i: Remote Sensing of Environment. - : Elsevier BV. - 0034-4257. ; 91:3-4, s. 332-344
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Tidskriftsartikel (refereegranskat)abstract
- Although the Normalized Difference Vegetation Index (NDVI) time-series data, derived from NOAA/AVFIRR, SPOT/VEGETATION, TERRA or AQUA/MODIS, has been successfully used in research regarding global environmental change, residual noise in the NDVI time-series data, even after applying strict pre-processing, impedes further analysis and risks generating erroneous results. Based on the assumptions that NDVI time-series follow annual cycles of growth and decline of vegetation, and that clouds or poor atmospheric conditions usually depress NDVI values, we have developed in the present study a simple but robust method based on the Savitzky-Golay filter to smooth out noise in NDVI time-series, specifically that caused primarily by cloud contamination and atmospheric variability. Our method was developed to make data approach the upper NDVI envelope and to reflect the changes in NDVI patterns via an iteration process. From the results obtained by applying the newly developed method to a 10-day MVC SPOT VGT-S product, we provide optimized parameters for the new method and compare this technique with the BISE algorithm and Fourier-based fitting method. Our results indicate that the new method is more effective in obtaining high-quality NDVI time-series.
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- Chen, ZH, et al.
(författare)
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Regulation of MUC5AC mucin secretion by depletion of AQP5 in SPC-A1 cells
- 2006
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Ingår i: Biochemical and Biophysical Research Communications. - : Elsevier BV. - 1090-2104 .- 0006-291X. ; 342:3, s. 775-781
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Tidskriftsartikel (refereegranskat)abstract
- Airway mucus is regulated by many inflammatory mediators such as ILs, TNF-alpha, EGF, PGF2 alpha, LT, and so on. Recently, the relationship between membrane ion channel and Mucus production has been under investigation. The present study aimed to examine whether AQP5 was involved in modulation of mucin expression and secretion in airway submucosal gland cells (SPC-Al). A recombinant plasmid (pShAQP5) containing small hairpin RNA expression cassette targeting AQP5 sequence was constructed. In pShAQP5 transiently transfected cells, ELISA showed MUC5AC synthesis and secretion were increased by 57.9% and 85.3%, respectively, on day 5 after pShAQP5 transfection. While in five stably transfected clones (shAQP5-G1, G2, G3, A2, and A5), the upregulated levels of M MAC mRNA were 118%, 165%, 65% 123%, and 38%, respectively. The elevated levels of M MAC synthesis and secretion varied from 59-156% and 33-166%, respectively. This is the first reliable investigation of the regulation of MUC5AC mucin secretion by silencing AQP5. Further study of the regulatory mechanism between AQPs and mucins may provide new strategies for development of novel antihypersecretory drugs in airway diseases.
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- Shah, S, et al.
(författare)
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Genome-wide association and Mendelian randomisation analysis provide insights into the pathogenesis of heart failure
- 2020
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Ingår i: Nature communications. - : Springer Science and Business Media LLC. - 2041-1723. ; 11:1, s. 163-
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Tidskriftsartikel (refereegranskat)abstract
- Heart failure (HF) is a leading cause of morbidity and mortality worldwide. A small proportion of HF cases are attributable to monogenic cardiomyopathies and existing genome-wide association studies (GWAS) have yielded only limited insights, leaving the observed heritability of HF largely unexplained. We report results from a GWAS meta-analysis of HF comprising 47,309 cases and 930,014 controls. Twelve independent variants at 11 genomic loci are associated with HF, all of which demonstrate one or more associations with coronary artery disease (CAD), atrial fibrillation, or reduced left ventricular function, suggesting shared genetic aetiology. Functional analysis of non-CAD-associated loci implicate genes involved in cardiac development (MYOZ1, SYNPO2L), protein homoeostasis (BAG3), and cellular senescence (CDKN1A). Mendelian randomisation analysis supports causal roles for several HF risk factors, and demonstrates CAD-independent effects for atrial fibrillation, body mass index, and hypertension. These findings extend our knowledge of the pathways underlying HF and may inform new therapeutic strategies.
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- Yakneen, S, et al.
(författare)
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Butler enables rapid cloud-based analysis of thousands of human genomes
- 2020
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Ingår i: Nature biotechnology. - : Springer Science and Business Media LLC. - 1546-1696 .- 1087-0156. ; 38:3, s. 288-
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Tidskriftsartikel (refereegranskat)abstract
- We present Butler, a computational tool that facilitates large-scale genomic analyses on public and academic clouds. Butler includes innovative anomaly detection and self-healing functions that improve the efficiency of data processing and analysis by 43% compared with current approaches. Butler enabled processing of a 725-terabyte cancer genome dataset from the Pan-Cancer Analysis of Whole Genomes (PCAWG) project in a time-efficient and uniform manner.
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