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Genome-wide association study identifies four novel loci associated with Alzheimer’s endophenotypes and disease modifiers

Deming, Yuetiva (author)
Washington University in St. Louis
Li, Zeran (author)
Washington University in St. Louis
Kapoor, Manav (author)
Icahn School of Medicine at Mount Sinai
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Harari, Oscar (author)
Washington University in St. Louis
Del-Aguila, Jorge L. (author)
Washington University in St. Louis
Black, Kathleen (author)
Washington University in St. Louis
Carrell, David S. (author)
Washington University in St. Louis
Cai, Yefei (author)
Washington University in St. Louis
Fernandez, Maria Victoria (author)
Washington University in St. Louis
Budde, John (author)
Washington University in St. Louis
Ma, Shengmei (author)
Washington University in St. Louis
Saef, Benjamin (author)
Washington University in St. Louis
Howells, Bill (author)
Washington University in St. Louis
Huang, Kuan lin (author)
Washington University in St. Louis
Bertelsen, Sarah (author)
Icahn School of Medicine at Mount Sinai
Fagan, Anne M (author)
Washington University in St. Louis
Holtzman, David M. (author)
Washington University in St. Louis
Morris, John C (author)
Washington University in St. Louis
Kim, Sungeun (author)
State University of New York at Oswego,Indiana University
Saykin, Andrew J. (author)
Indiana University
De Jager, Philip L (author)
Brigham and Women's Hospital / Harvard Medical School,Harvard Medical School,Broad Institute
Albert, Marilyn (author)
Johns Hopkins University School of Medicine
Moghekar, Abhay (author)
Johns Hopkins University School of Medicine
O’Brien, Richard (author)
Duke University
Riemenschneider, Matthias (author)
Saarland University
Petersen, Ronald C (author)
Mayo Clinic Minnesota
Blennow, Kaj (author)
Gothenburg University,Göteborgs universitet,Institutionen för neurovetenskap och fysiologi, sektionen för psykiatri och neurokemi,Institute of Neuroscience and Physiology, Department of Psychiatry and Neurochemistry
Zetterberg, Henrik (author)
Gothenburg University,Göteborgs universitet,Institutionen för neurovetenskap och fysiologi, sektionen för psykiatri och neurokemi,Institute of Neuroscience and Physiology, Department of Psychiatry and Neurochemistry
Minthon, Lennart (author)
Lund University,Lunds universitet,Klinisk minnesforskning,Forskargrupper vid Lunds universitet,Clinical Memory Research,Lund University Research Groups
Van Deerlin, Vivianna M (author)
University of Pennsylvania
Lee, Virginia Man Yee (author)
University of Pennsylvania
Shaw, Leslie M. (author)
University of Pennsylvania
Trojanowski, John Q (author)
University of Pennsylvania
Schellenberg, Gerard D. (author)
University of Pennsylvania
Haines, Jonathan L. (author)
Vanderbilt University
Mayeux, Richard (author)
Columbia University
Pericak-Vance, Margaret A. (author)
University of Miami
Farrer, Lindsay A. (author)
Boston University
Peskind, Elaine R. (author)
University of Washington,VA Puget Sound Health Care System
Li, Ge (author)
VA Puget Sound Health Care System,University of Washington
Di Narzo, Antonio F. (author)
Icahn School of Medicine at Mount Sinai
Kauwe, John S K (author)
Brigham Young University
Goate, Alison M. (author)
Icahn School of Medicine at Mount Sinai
Cruchaga, Carlos (author)
Washington University in St. Louis
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Washington University in St Louis Icahn School of Medicine at Mount Sinai (creator_code:org_t)
 
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2017-02-28
2017
English 18 s.
In: Acta Neuropathologica. - : Springer Science and Business Media LLC. - 0001-6322 .- 1432-0533. ; 133:5, s. 839-856
  • Journal article (peer-reviewed)
Abstract Subject headings
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  • More than 20 genetic loci have been associated with risk for Alzheimer’s disease (AD), but reported genome-wide significant loci do not account for all the estimated heritability and provide little information about underlying biological mechanisms. Genetic studies using intermediate quantitative traits such as biomarkers, or endophenotypes, benefit from increased statistical power to identify variants that may not pass the stringent multiple test correction in case–control studies. Endophenotypes also contain additional information helpful for identifying variants and genes associated with other aspects of disease, such as rate of progression or onset, and provide context to interpret the results from genome-wide association studies (GWAS). We conducted GWAS of amyloid beta (Aβ42), tau, and phosphorylated tau (ptau181) levels in cerebrospinal fluid (CSF) from 3146 participants across nine studies to identify novel variants associated with AD. Five genome-wide significant loci (two novel) were associated with ptau181, including loci that have also been associated with AD risk or brain-related phenotypes. Two novel loci associated with Aβ42 near GLIS1 on 1p32.3 (β = −0.059, P = 2.08 × 10−8) and within SERPINB1 on 6p25 (β = −0.025, P = 1.72 × 10−8) were also associated with AD risk (GLIS1: OR = 1.105, P = 3.43 × 10−2), disease progression (GLIS1: β = 0.277, P = 1.92 × 10−2), and age at onset (SERPINB1: β = 0.043, P = 4.62 × 10−3). Bioinformatics indicate that the intronic SERPINB1 variant (rs316341) affects expression of SERPINB1 in various tissues, including the hippocampus, suggesting that SERPINB1 influences AD through an Aβ-associated mechanism. Analyses of known AD risk loci suggest CLU and FERMT2 may influence CSF Aβ42 (P = 0.001 and P = 0.009, respectively) and the INPP5D locus may affect ptau181 levels (P = 0.009); larger studies are necessary to verify these results. Together the findings from this study can be used to inform future AD studies.

Subject headings

MEDICIN OCH HÄLSOVETENSKAP  -- Klinisk medicin -- Neurologi (hsv//swe)
MEDICAL AND HEALTH SCIENCES  -- Clinical Medicine -- Neurology (hsv//eng)
MEDICIN OCH HÄLSOVETENSKAP  -- Medicinska och farmaceutiska grundvetenskaper -- Neurovetenskaper (hsv//swe)
MEDICAL AND HEALTH SCIENCES  -- Basic Medicine -- Neurosciences (hsv//eng)

Keyword

Alzheimer’s disease
Cerebrospinal fluid biomarkers
Endophenotype
Genome-wide association study

Publication and Content Type

art (subject category)
ref (subject category)

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