| 1. |
- Crous, P. W., et al.
(författare)
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Fusarium : more than a node or a foot-shaped basal cell
- 2021
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Ingår i: Studies in mycology. - : CENTRAALBUREAU SCHIMMELCULTURE. - 0166-0616 .- 1872-9797. ; :98
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Tidskriftsartikel (refereegranskat)abstract
- Recent publications have argued that there are potentially serious consequences for researchers in recognising distinct genera in the terminal fusarioid clade of the family Nectriaceae. Thus, an alternate hypothesis, namely a very broad concept of the genus Fusarium was proposed. In doing so, however, a significant body of data that supports distinct genera in Nectriaceae based on morphology, biology, and phylogeny is disregarded. A DNA phylogeny based on 19 orthologous protein-coding genes was presented to support a very broad concept of Fusarium at the F1 node in Nectriaceae. Here, we demonstrate that re-analyses of this dataset show that all 19 genes support the F3 node that represents Fusarium sensu stricto as defined by F. sambucinum (sexual morph synonym Gibberella pulicaris). The backbone of the phylogeny is resolved by the concatenated alignment, but only six of the 19 genes fully support the F1 node, representing the broad circumscription of Fusarium. Furthermore, a re-analysis of the concatenated dataset revealed alternate topologies in different phylogenetic algorithms, highlighting the deep divergence and unresolved placement of various Nectriaceae lineages proposed as members of Fusarium. Species of Fusarium s. str. are characterised by Gibberella sexual morphs, asexual morphs with thin- or thick-walled macroconidia that have variously shaped apical and basal cells, and trichothecene mycotoxin production, which separates them from other fusarioid genera. Here we show that the Wollenweber concept of Fusarium presently accounts for 20 segregate genera with clear-cut synapomorphic traits, and that fusarioid macroconidia represent a character that has been gained or lost multiple times throughout Nectriaceae. Thus, the very broad circumscription of Fusarium is blurry and without apparent synapomorphies, and does not include all genera with fusarium-like macroconidia, which are spread throughout Nectriaceae (e.g., Cosmosporella, Macroconia, Microcera). In this study four new genera are introduced, along with 18 new species and 16 new combinations. These names convey information about relationships, morphology, and ecological preference that would otherwise be lost in a broader definition of Fusarium. To assist users to correctly identify fusarioid genera and species, we introduce a new online identification database, Fusarioid-ID, accessible at www.fusarium.org. The database comprises partial sequences from multiple genes commonly used to identify fusarioid taxa (act1, CaM, his3, rpb1, rpb2, tef1, tub2, ITS, and LSU). In this paper, we also present a nomenclator of names that have been introduced in Fusarium up to January 2021 as well as their current status, types, and diagnostic DNA barcode data. In this study, researchers from 46 countries, representing taxonomists, plant pathologists, medical mycologists, quarantine officials, regulatory agencies, and students, strongly support the application and use of a more precisely delimited Fusarium (= Gibberella) concept to accommodate taxa from the robust monophyletic node F3 on the basis of a well-defined and unique combination of morphological and biochemical features. This F3 node includes, among others, species of the F. fujikuroi, F. incarnatum-equiseti, F. oxysporum, and F. sambucinum species complexes, but not species of Bisifusarium [F. dimerum species complex (SC)], Cyanonectria (F. buxicola SC), Geejayessia (F. staphyleae SC), Neocosmospora (F. solani SC) or Rectifusarium (F. ventricosum SC). The present study represents the first step to generating a new online monograph of Fusarium and allied fusarioid genera (www.fusarium.org).
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| 2. |
- Chen, Yilin, et al.
(författare)
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The combination of genomic offset and niche modelling provides insights into climate change-driven vulnerability
- 2022
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Ingår i: Nature Communications. - : Springer Science and Business Media LLC. - 2041-1723. ; 13:1
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Tidskriftsartikel (refereegranskat)abstract
- Global warming is increasingly exacerbating biodiversity loss. Populations locally adapted to spatially heterogeneous environments may respond differentially to climate change, but this intraspecific variation has only recently been considered when modelling vulnerability under climate change. Here, we incorporate intraspecific variation in genomic offset and ecological niche modelling to estimate climate change-driven vulnerability in two bird species in the Sino-Himalayan Mountains. We found that the cold-tolerant populations show higher genomic offset but risk less challenge for niche suitability decline under future climate than the warm-tolerant populations. Based on a genome-niche index estimated by combining genomic offset and niche suitability change, we identified the populations with the least genome-niche interruption as potential donors for evolutionary rescue, i.e., the populations tolerant to climate change. We evaluated potential rescue routes via a landscape genetic analysis. Overall, we demonstrate that the integration of genomic offset, niche suitability modelling, and landscape connectivity can improve climate change-driven vulnerability assessments and facilitate effective conservation management.
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| 3. |
- Fu, Rao, et al.
(författare)
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First report of Sphenothallus Hall, 1847 from the lower Cambrian of North China
- 2023
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Ingår i: Alcheringa. - 0311-5518 .- 1752-0754. ; , s. 1-9
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Tidskriftsartikel (refereegranskat)abstract
- Sphenothallus is a tubular organism that is one of the most widely distributed and longest-ranging genera through the Palaeozoic. Despite its apparent cosmopolitan distribution, the genus has never been reported from North China. New specimens of Sphenothallus sp. have been discovered in the upper part of the Houjiashan and base of the Mantou formations (early to middle Age 4, Epoch 2, Cambrian) in Jiangsu Province, North China. The specimens are small tubes (up to 5 mm long) and have typical Sphenothallus characteristics, such as a multilayered lamellar structure, and subcircular to elliptical transverse cross-section with a pair of longitudinal thickenings situated at the widest diameter. Our material shows that both the rate of apertural expansion and the curvature of the tubes are significantly larger in early growth stages than in the later growth stages. As the diameter of the aperture increases, the transverse cross-section of the Sphenothallus sp. tube changes from subcircular at the proximal end to elliptical or lenticular at the distal end, and its wall thickness changes from uniform to thickening longitudinally. The discovery of Sphenothallus sp. from the North China Platform represents an extension of its palaeogeographic range during the Cambrian.
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| 4. |
- Liu, Fan, et al.
(författare)
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A fresh look at the Hyolithid Doliutheca from the Early Cambrian (Stage 4) Shipai Formation of the Three Gorges Area, Hubei, South China
- 2022
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Ingår i: Biology. - : MDPI AG. - 2079-7737. ; 11:6, s. 875-875
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Tidskriftsartikel (refereegranskat)abstract
- New hyolith specimens from the early Cambrian (Stage 4) of the Three Gorges area, western Hubei Province are described and assigned to the species Doliutheca orientalis. Doliutheca are preserved in two taphonomic modes: casts in silty mudstone revealing gross morphology and some soft parts, and internal molds in calcareous pelites, which exhibit new morphological details of the conch and operculum. SEM and Micro-CT analyses show that Doliutheca preserve well-developed platy clavicles and cardinal processes on the interior of the operculum composed of rod-shaped tubular elements. This observation and the distinct cardinal and conical shields of the operculum indicate that Doliutheca could be placed within the Family Paramicrocornidae, most recently established as a group of hyoliths closely related to hyolithids.
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| 5. |
- Liu, Fan, et al.
(författare)
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Are hyoliths Palaeozoic lophophorates?
- 2020
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Ingår i: National Science Reviews. - : Oxford University Press (OUP). - 2095-5138 .- 2053-714X. ; 7:2, s. 453-469
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Tidskriftsartikel (refereegranskat)abstract
- The phylogenetic position of hyoliths has long been unsettled, with recent discoveries of a tentaculate feeding apparatus (‘lophophore’) and fleshy apical extensions from the shell (‘pedicle’) suggesting a lophophorate affinity. Here, we describe the first soft parts associated with the feeding apparatus of an orthothecid hyolith, Triplicatella opimus from the Chengjiang biota of South China. The tuft-like arrangement of the tentacles of T. opimus differs from that of hyolithids, suggesting they collected food directly from the substrate. A reassessment of the feeding organ in hyolithids indicates that it does not represent a lophophore and our analysis of the apical structures associated with some orthothecids show that these represent crushed portions of the shell and are not comparable to the brachiopod pedicle. The new information suggests that hyoliths are more likely to be basal members of the lophotrochozoans rather than lophophorates closely linked with the Phylum Brachiopoda.
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| 6. |
- Liu, Fan, et al.
(författare)
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Revision of Triplicatella (Orthothecida, Hyolitha) with preserved digestive tracts from the early Cambrian Chengjiang Lagerstätte, South China
- 2021
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Ingår i: Historical Biology. - : Taylor & Francis. - 0891-2963 .- 1029-2381. ; 33:9, s. 1857-1871
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Tidskriftsartikel (refereegranskat)abstract
- The cap-shaped shells of Triplicatella are known almost exclusively from small shelly fossil assemblages with articulated specimens showing unequivocally that they represent the operculum of a hyolith. Abundant specimens of Triplicatella opimus from the fine-grained shales of the Chengjiang Lagerstätte of South China with soft-part preservation are documented herein. The soft tissues, including the feeding apparatus and complex digestive system, in T. opimus strongly suggest that Triplicatella was a deposit feeder. The digestive tract of T. opimus consists of two limbs, a spiral loop folded into a chevron-like structure and a slightly recurved to straight anal tube, which are preserved as reddish-black traces enriched in iron. The new anatomical information obtained from T. opimus in the Chengjiang Biota suggests an intermediate stage in the development of the characteristic folded gut of orthothecid hyoliths. The new anatomical information reported here shows that Triplicatella is one of the best-preserved early members of the Orthothecida and promotes our understanding of the general anatomy and evolution of the Hyolitha.
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| 7. |
- Liu, Fan, et al.
(författare)
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Soft part preservation in hyolithids from the lower Cambrian (Stage 4) Guanshan Biota of South China and its implications
- 2021
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Ingår i: Palaeogeography, Palaeoclimatology, Palaeoecology. - : Elsevier BV. - 0031-0182 .- 1872-616X. ; 562, s. 110079-110079
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Tidskriftsartikel (refereegranskat)abstract
- Hyoliths, known globally from the Cambrian to the Permian are generally recognized as early lophotrochozoan animals of uncertain phylogenetic position. The calcareous exoskeleton of hyolithids, one of the two subgroups of hyoliths, consist of four elements including a conical conch, an external operculum, and a pair of curved enigmatic helens, but their ecology and internal morphology have long been considered controversial. Here we present for the first time, remarkably preserved hyolithids with helens and interior soft tissues from the Guanshan Biota (Cambrian, Stage 4) of Shijiangjun section, Wuding County in eastern Yunnan Province of South China. Preserved soft tissues and organs encompass the digestive tract, muscle scars and connective tissues between the operculum and conch. Three modes of soft part preservation in hyolithids from the Guanshan Biota are described: (1) preservation through pyritization, (2) sediment-infilling of guts, and (3) bacterial biofilm pseudomorphs (expressed as large internal hollow cavities), resulting from endogenous bacterial decay of soft parts. Such differential preservation of hyolith guts indicates different taphonomic modes for the soft parts of Cambrian animals in the Guanshan Biota. The newly collected material yields the oldest preserved guts in hyolithids from Konservat-biotas, and reveals new evidence for reconstructing hyolithid anatomy, such as the articulation mechanism of the opercula and the internal structures in the conch. Comparisons with younger wellpreserved hyolithid specimens indicate that the gut anatomy of hyolithids was evolutionarily conservative from the early Cambrian through to at least the Ordovician.
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| 8. |
- Skovsted, Christian, 1974-, et al.
(författare)
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First discovery of Small Shelly Fossils and new occurrences of brachiopods and trilobites from the early Cambrian (Stage 4) of the Swedish Caledonides, Lapland
- 2021
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Ingår i: GFF. - London : Taylor & Francis. - 1103-5897 .- 2000-0863. ; 143:2-3, s. 134-150
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Tidskriftsartikel (refereegranskat)abstract
- New fossil discoveries are reported from the Grammajukku Formation at Luobákte south of Lake Torneträsk in northern Swedish Lapland, including a fauna of Small Shelly Fossils (SSF) from a limestone bed in the uppermost part of the formation and new occurrences of brachiopods and trilobites in siltstones of the lower part of the formation. The moderately diverse SSF fauna is the first of its kind reported from the Swedish Caledonides and includes the first record of the tommotiid Lapworthella schodackensis and the bradoriid spine Mongolitubulus spinosus from Baltica, together with fragmentary specimens of Bradoria sp. and remains of one additional bradoriid arthropod, a protoconodont and a helcionelloid mollusc. In addition, the limestone bed yields abundant specimens of the brachiopods Botsfordia cf. caelata and Eoobolus cf. priscus and an unidentified ellipsocephalid trilobite. Lower down in the Grammajukku Formation, specimens of both brachiopod taxa, orthothecid hyoliths, the trilobite Ellipsocephalus cf. gripi and an unidentified holmiid trilobite were found at several levels in a siltstone, previously regarded as unfossiliferous. These discoveries markedly increase the known diversity of the palaeobiota from the Grammajukku Formation in northern Lapland and provide new insights into the biostratigraphy and palaeoenvironment of the lower Cambrian in Scandinavia and the palaeobiogeography of Cambrian faunas in general.
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| 9. |
- Yang, Xuan, et al.
(författare)
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Geochemical records and environmental analysis of the Ediacaran-Cambrian boundary in Eastern Yunnan, South China
- 2023
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Ingår i: Frontiers in Earth Science. - 2296-6463. ; 11
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Tidskriftsartikel (refereegranskat)abstract
- The Ediacaran–Cambrian transition is characterized by an unprecedented change in biosphere, lithosphere, and atmosphere. However, the identification of this transition and its global correlation remains debated. East Yunnan is a region of utmost importance in the study of the Ediacaran-Cambrian transition. Although strata from this region have been well studied, recognition of the base of the Cambrian continues to be controversial. This paper presents, a carbon chemostratigraphic isotope and trace element profile through the Dengying and Zhujiaqing formations in the Sujiawa section in East Yunnan. Through carbon isotope and trace element analyses of the Dengying and Zhujiaqing formations we attempt to regionally correlate the section and discuss the paleo-marine redox environment changes during this period. The Fe content of samples is low and the Mn/Sr ratios of the majority of the Sujiawa section samples is lower than 10 and shows no correlations with δ13Ccarb and δ18Ocarb values, indicating that the samples retain near-primary δ13Ccarb characteristics. The carbon isotope profile from the Sujiawa section, shows a prominent negative δ13Ccarb in the basal Zhongyicun Member (N1’, −7.3‰) that most likely represents the prominent negative excursion recorded in Ediacaran-Cambrian strata across the world. REE patterns and Y/Ho ratios were used to screen samples, to ensure that the primary seawater REE features and Ce anomalies were preserved. The samples satisfying this screening process show seawater-like REE distribution patterns in leached carbonates and may have recorded Ce anomalies of the seawater from which the carbonates precipitated. These data show that the Baiyanshao Member has Ce/Ce* values between 0.57 and 0.88, the Daibu Member between 0.56 and 0.83, and the Zhongyicun Member between 0.60 and 0.96. The Ce anomalies through the section indicates that the region experienced suboxic-oxic-anoxic conditions throughout the Ediacaran-Cambrian period. Carbon isotope and trace element analyses indicate that the strata record a negative carbon isotope excursion event and anoxic conditions during the period of deposition. This study complements the carbon chemostratigraphic information and trace element data in the region and provides valuable clues for understanding the lithofacies changes through the Ediacaran and Cambrian in different regions of South China.
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