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- Blacque, O E, et al.
(författare)
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Functional genomics of the cilium, a sensory organelle
- 2005
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Ingår i: Current Biology. - : Elsevier BV. - 0960-9822 .- 1879-0445. ; 15:10, s. 935-941
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Tidskriftsartikel (refereegranskat)abstract
- Cilia and flagella play important roles in many physiological processes, including cell and fluid movement, sensory perception, and development [1]. The biogenesis and maintenance of cilia depend on intraflagellar transport (IFT), a motility process that operates bidirectionally along the ciliary axoneme [1, 2]. Disruption in IFT and cilia function causes several human disorders, including polycystic kidneys, retinal dystrophy, neurosensory impairment, and Bardet-Bledl syndrome (BBS) [3-5]. To uncover new ciliary components, including IFT proteins, we compared C. elegans ciliated neuronal and nonciliated cells through serial analysis of gene expression (SAGE) and screened for genes potentially regulated by the cillogenic transcription factor, DAF-19 [6]. Using these complementary approaches, we identified numerous candidate ciliary genes and confirmed the ciliated-cell-specific expression of 14 novel genes. One of these, C27H5.7a, encodes a ciliary protein that undergoes IFT. As with other IFT proteins, its ciliary localization and transport is disrupted by mutations in IFT and bbs genes. Furthermore, we demonstrate that the ciliary structural defect of C. elegans dyf-13(mn396) mutants is caused by a mutation in C27H5.7a. Together, our findings help define a ciliary transcriptome and suggest that DYF-13, an evolutionarily conserved protein, is a novel core IFT component required for cilia function.
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| 4. |
- Andrén, Elinor, et al.
(författare)
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The relative influences of climate and volcanic activity on Holocene lake development inferred from a mountain lake in central Kamchatka
- 2015
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Ingår i: Global and Planetary Change. - : Elsevier BV. - 1872-6364 .- 0921-8181. ; 134, s. 67-81
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Tidskriftsartikel (refereegranskat)abstract
- A sediment sequence was taken from a closed, high altitude lake (informal name Olive-backed Lake) in the central mountain range of Kamchatka, in the Russian Far East. The sequence was dated by radiocarbon and tephrochronology and used for multi-proxy analyses (chironomids, pollen, diatoms). Although the evolution of Beringian climate through the Holocene is primarily driven by global forcing mechanisms, regional controls, such as volcanic activity or vegetation dynamics, lead to a spatial heterogeneous response. This study aims to reconstruct past changes in the aquatic and terrestrial ecosystems and to separate the climate-driven response from a response to regional or localised environmental change. Radiocarbon dates from plant macrophytes gave a basal date of 7800 cal yr BP. Coring terminated in a tephra layer, so sedimentation at the lake started prior to this date, possibly in the early Holocene following local glacier retreat. Initially the catchment vegetation was dominated by Betula and Alnus woodland with a mosaic of open, wet, aquatic and semi-aquatic habitats. Between 7800 and 6000 cal yr BP the diatom-inferred lake water was pH 4.4-53 and chironomid and diatom assemblages in the lake were initially dominated by a small number of acidophilic/acid tolerant taxa. The frequency of Pinus pumila (Siberian dwarf pine) pollen increased from 5000 cal yr BP and threshold analysis indicates that P. pumila arrived in the catchment between 4200 and 3000 cal yr BP. Its range expansion was probably mediated by strengthening of the Aleutian Low pressure system and increased winter snowfall. The diatominferred pH reconstructions show that after an initial period of low pH, pH gradually increased from 5500 cal yr BP to pH 5.8 at 1500 cal yr BP. This trend of increasing pH through the Holocene is unusual in lake records, but the initially low pH may have resulted directly or indirectly from intense regional volcanic activity during the midHolocene. The chironomid-inferred July temperature reconstruction suggests cool periods between 32002800 cal yr BP and 1100-700 cal yr BP and a warmer period between 2800 and 1100 cal yr BP. Chironomid and diatom DCA scores decline from ca. 6000 cal yr BP, indicating compositional changes in these aquatic assemblages. In comparison declines in pollen PCA scores are delayed, starting ca. 5100 cal yr BP. The results suggest that while catchment vegetation was responding primarily to climate change, the biota within the lake and lake water chemistry were responding to localised environmental conditions. Crown Copyright (C) 2015 Published by Elsevier B.V. All rights reserved.
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- Engel, Katja, et al.
(författare)
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Meeting Report : 1st International Functional Metagenomics Workshop May 7-8, 2012, St. Jacobs, Ontario, Canada
- 2013
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Ingår i: Standards in Genomic Sciences. - : Springer Science and Business Media LLC. - 1944-3277. ; 8:1, s. 106-111
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Tidskriftsartikel (övrigt vetenskapligt/konstnärligt)abstract
- This report summarizes the events of the 1st International Functional Metagenomics Workshop. The workshop was held on May 7 and 8, 2012, in St. Jacobs, Ontario, Canada and was focused on building an international functional metagenomics community, exploring strategic research areas, and identifying opportunities for future collaboration and funding. The workshop was initiated by researchers at the University of Waterloo with support from the Ontario Genomics Institute (OGI), Natural Sciences and Engineering Research Council of Canada (NSERC) and the University of Waterloo.
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| 6. |
- Solovieva, N., et al.
(författare)
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The Holocene environmental history of a small coastal lake on the north-eastern Kamchatka Peninsula
- 2015
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Ingår i: Global and Planetary Change. - : Elsevier BV. - 1872-6364 .- 0921-8181. ; 134, s. 55-66
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Tidskriftsartikel (refereegranskat)abstract
- A radiocarbon and tephra-dated sediment core from Lifebuoy Lake, located on the north-east coast of Kamchatka Peninsula, was analysed for pollen, spores, diatoms, chironomids and tephra in order to uncover regional environmental history. The 6500-year environmental history of Lifebuoy Lake correlates with the broad regional patterns of vegetation development and climate dynamics with both diatoms and chironomids showing near-synchronous changes. Between ca. 6300 and 3900 cal yr BP, the lake ecosystem was naturally enriched, with several Stephanodiscus species dominating the diatom plankton. This natural eutrophication state is likely to be due to a combination of the base-rich catchment geology, the fertilisation effect of several fires in the catchment, silica input from tephra layers and, possibly, nitrogen input from seabirds. The substantial tephra deposit at about 3850 cal yr BP might have stopped sedimentary phosphorus from entering the lake water thus decreasing the trophic state of the lake and facilitating the shift in diatom composition to a benthic Fragiliariaceae complex. Both diatoms and chironomids showed simultaneous compositional changes, which are also reflected by statistically significant changes in their rates of change 300-400 years after the arrival of Pinus pumila in the lake catchment. The rapid increase in both total diatom concentration and the percentage abundance of the large heavy species, Aulacoseira subarctica might be a response to the change in timing and intensity of lake spring turnover due to the changes in the patterns of North Pacific atmospheric circulation, most notably westward shift Of the Aleutian Low. The two highest peaks in A. subarctica abundance at Lifebouy Lake occurred during opposite summer temperature inferences: the earlier peak (3500-2900 cal yr BP) coincided with warm summers and the latter peak (300 cal yr BP-present) occurred during the cold summer period. These imply that A. subarctica shows no direct response to the changes of summer air temperature. Instead, it appears to thrive during the periods of increased winter precipitation, thicker ice and late spring turn-over periods, i.e., shows indirect response to climate. The clearest effect of tephra deposition on the lake ecosystem is above 908 cm (ca. 3800 cal yr BP) where the tephra deposit might have caused the shift from Stephanodiscus-dominated planktonic assemblages to the Fragilariaceae complex of benthic species. Tephra deposits might have also contributed towards the development of eutrophic plankton from about 6300 cal yr BP. It is not certain if several tephra deposits influenced diatom and chironomid changes during the last 300 years. (C) 2015 The Authors. Published by Elsevier B.V.
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| 8. |
- Dusingizimana, T., et al.
(författare)
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Household-Level Coverage of Iron-Biofortified Beans in the Northern Province of Rwanda
- 2023
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Ingår i: Current Developments in Nutrition. - : Elsevier. - 2475-2991. ; 7:6
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Tidskriftsartikel (refereegranskat)abstract
- Background: Biofortification, the process of enhancing the micronutrient content of staple crops, is a nutrition-sensitive agricultural intervention with the potential to increase micronutrient intakes and improve health outcomes, especially among vulnerable populations. Although data are available on the number of farming households that grow biofortified crops, information on the coverage of biofortified foods in the general population is limited. Such information is critical to assess the performance of biofortification programs and guide decisions related to program implementation while ascertaining progress toward achieving expected impacts. Objective: This study aimed to assess the household coverage of iron-biofortified beans (IBBs) in rural areas of the Northern Province of Rwanda. Methods: We applied methods previously used to assess coverage in large-scale food fortification programs to develop coverage indicators for IBBs. These indicators were 1) consumption of beans in any form; 2) awareness of IBBs; 3) availability of IBBs; 4) consumption of IBBs (ever); and 5) consumption of IBBs (current). Results: Of the 535 households surveyed, 98% consumed beans in any form and 79% were aware of IBBs. Among the 321 households that provided bean samples, only 40% of the samples were biofortified (as determined by a breeding specialist) and only 21% of respondents were able to correctly identify IBBs. Although 52% of households reported to be ever consuming biofortified beans, only 10% of households were currently consuming these beans. Conclusions: Despite relatively high awareness of IBBs among surveyed households, a few households currently consume IBBs, highlighting the need to explore strategies to promote consumption. More research is also required to investigate factors hindering the consumption of IBBs. © 2023
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