| 1. |
- Hartmann, Laura, et al.
(author)
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Crosstalk between Two bZIP Signaling Pathways Orchestrates Salt-Induced Metabolic Reprogramming in Arabidopsis Roots
- 2015
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In: The Plant Cell. - : American Society of Plant Biologists. - 1040-4651 .- 1532-298X. ; 27:8, s. 2244-2260
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Journal article (peer-reviewed)abstract
- Soil salinity increasingly causes crop losses worldwide. Although roots are the primary targets of salt stress, the signaling networks that facilitate metabolic reprogramming to induce stress tolerance are less understood than those in leaves. Here, a combination of transcriptomic and metabolic approaches was performed in salt-treated Arabidopsis thaliana roots, which revealed that the group S1 basic leucine zipper transcription factors bZIP1 and bZIP53 reprogram primary C- and N-metabolism. In particular, gluconeogenesis and amino acid catabolism are affected by these transcription factors. Importantly, bZIP1 expression reflects cellular stress and energy status in roots. In addition to the well-described abiotic stress response pathway initiated by the hormone abscisic acid (ABA) and executed by SnRK2 (Snf1-RELATED-PROTEIN-KINASE2) and AREB-like bZIP factors, we identify a structurally related ABA-independent signaling module consisting of SnRK1s and S1 bZIPs. Crosstalk between these signaling pathways recruits particular bZIP factor combinations to establish at least four distinct gene expression patterns. Understanding this signaling network provides a framework for securing future crop productivity.
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| 2. |
- Mikryukov, Vladimir, et al.
(author)
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Connecting the multiple dimensions of global soil fungal diversity
- 2023
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In: Science advances. - 2375-2548. ; 9:48
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Journal article (peer-reviewed)abstract
- How the multiple facets of soil fungal diversity vary worldwide remains virtually unknown, hindering the management of this essential species-rich group. By sequencing high-resolution DNA markers in over 4000 topsoil samples from natural and human-altered ecosystems across all continents, we illustrate the distributions and drivers of different levels of taxonomic and phylogenetic diversity of fungi and their ecological groups. We show the impact of precipitation and temperature interactions on local fungal species richness (alpha diversity) across different climates. Our findings reveal how temperature drives fungal compositional turnover (beta diversity) and phylogenetic diversity, linking them with regional species richness (gamma diversity). We integrate fungi into the principles of global biodiversity distribution and present detailed maps for biodiversity conservation and modeling of global ecological processes.
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| 3. |
- Tedersoo, Leho, et al.
(author)
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Global patterns in endemicity and vulnerability of soil fungi.
- 2022
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In: Global change biology. - : Wiley. - 1365-2486 .- 1354-1013. ; 28:22, s. 6696-6710
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Journal article (peer-reviewed)abstract
- Fungi are highly diverse organisms, which provide multiple ecosystem services. However, compared with charismatic animals and plants, the distribution patterns and conservation needs of fungi have been little explored. Here, we examined endemicity patterns, global change vulnerability and conservation priority areas for functional groups of soil fungi based on six global surveys using a high-resolution, long-read metabarcoding approach. We found that the endemicity of all fungi and most functional groups peaks in tropical habitats, including Amazonia, Yucatan, West-Central Africa, Sri Lanka, and New Caledonia, with a negligible island effect compared with plants and animals. We also found that fungi are predominantly vulnerable to drought, heat and land-cover change, particularly in dry tropical regions with high human population density. Fungal conservation areas of highest priority include herbaceous wetlands, tropical forests, and woodlands. We stress that more attention should be focused on the conservation of fungi, especially root symbiotic arbuscular mycorrhizal and ectomycorrhizal fungi in tropical regions as well as unicellular early-diverging groups and macrofungi in general. Given the low overlap between the endemicity of fungi and macroorganisms, but high conservation needs in both groups, detailed analyses on distribution and conservation requirements are warranted for other microorganisms and soil organisms.
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| 4. |
- Vicente-Serrano, S. M., et al.
(author)
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Vegetation greening in Spain detected from long term data (1981-2015)
- 2020
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In: International Journal of Remote Sensing. - : Informa UK Limited. - 0143-1161 .- 1366-5901. ; 41:5, s. 1709-1740
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Journal article (peer-reviewed)abstract
- This study describes a newly developed high-resolution (1.1 km) Normalized Difference Vegetation Index dataset for the peninsular Spain and the Balearic Islands (Sp_1km_NDVI). This dataset is developed based on National Oceanic and Atmospheric Administration–Advanced Very High Resolution Radiometer (NOAA–AVHRR) afternoon images, spanning the past three decades (1981–2015). After a careful pre-processing procedure, including calibration with post-launch calibration coefficients, geometric and topographic corrections, cloud removal, temporal filtering, and bi-weekly composites by maximum NDVI-value, we assessed changes in vegetation greening over the study domain using Mann-Kendall and Theil-Sen statistics. Our trend results were compared with those derived from some widely recognized global NDVI datasets [e.g. the Global Inventory Modelling and Mapping Studies 3rd generation (GIMMS3g), Smoothed NDVI (SMN) and Moderate-Resolution Imaging Spectroradiometer (MODIS)]. Results demonstrate that there is a good agreement between the annual trends based on Sp_1km_NDVI product and other datasets. Nonetheless, we found some differences in the spatial patterns of the NDVI trends at the seasonal scale. Overall, in comparison to the available global NDVI datasets, Sp_1km_NDVI allows for characterizing changes in vegetation greening at a more-detailed spatial and temporal scale. In specific, our dataset provides relatively long-term corrected satellite time series (>30 years), which are crucial to understand the response of vegetation to climate change and human-induced activities. Also, given the complex spatial structure of NDVI changes over the study domain, particularly due to the rapid land intensification processes, the spatial resolution (1.1 km) of our dataset can provide detailed spatial information on the inter-annual variability of vegetation greening in this Mediterranean region and assess its links to climate change and variability.
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