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Bioconda: A sustainable and comprehensive software distribution for the life sciences

Grüning, Björn (author)
Dale, Ryan (author)
Sjödin, Andreas (author)
show more...
Chapman, Brad (author)
Rowe, Jillian (author)
Tomkins-Tinch, Christopher (author)
Valieris, Renan (author)
Caprez, Adam (author)
Batut, Bérénice (author)
Haudgaard, Mathias (author)
Cokelaer, Thomas (author)
Beauchamp, Kyle (author)
Pedersen, Brent (author)
Hoogstrate, Youri (author)
Bretaudeau, Anthony (author)
Ryan, Devon (author)
Le Corguillé, Gildas (author)
Yusuf, Dilmurat (author)
Luna-Valero, Sebastian (author)
Kirchner, Rory (author)
Brinda, Karel (author)
Wollmann, Thomas (author)
Raden, Martin (author)
van Heeringen, Simon (author)
Soranzo, Nicola (author)
Pantano, Lorena (author)
Charlop-Powers, Zachary (author)
Unneberg, Per (author)
De Smet, Matthias (author)
Martin, Marcel (author)
Von Kuster, Greg (author)
Antao, Tiago (author)
Miladi, Milad (author)
Thornton, Kevin (author)
Brueffer, Christian (author)
Lund University,Lunds universitet,Bröstcancer-genetik,Sektion I,Institutionen för kliniska vetenskaper, Lund,Medicinska fakulteten,Breastcancer-genetics,Section I,Department of Clinical Sciences, Lund,Faculty of Medicine
van der Beek, Marius (author)
Maticzka, Daniel (author)
Blank, Clemens (author)
Will, Sebastian (author)
Gravouil, Kévin (author)
Wolff, Joachim (author)
Holtgrewe, Manuel (author)
Fallmann, Jörg (author)
Piro, Vitor (author)
Shlyakhter, Ilya (author)
Yousif, Ayman (author)
Mabon, Philip (author)
Zhang, Xiao-Ou (author)
Shen, Wei (author)
Cabral, Jennifer (author)
Thomas, Cristel (author)
Enns, Eric (author)
Brown, Joseph (author)
Boekel, Jorrit (author)
de Hollander, Mattias (author)
Kelleher, Jerome (author)
Turaga, Nitesh (author)
de Ruiter, Julian (author)
Bouvier, Dave (author)
Gladman, Simon (author)
Choudhary, Saket (author)
Harding, Nicholas (author)
Eggenhofer, Florian (author)
Kratz, Arne (author)
Fang, Zhuoqing (author)
Kleinkauf, Robert (author)
Timm, Henning (author)
Cock, Peter (author)
Seiler, Enrico (author)
Brislawn, Colin (author)
Nguyen, Hai (author)
Bakken Stovner, Endre (author)
Ewels, Philip (author)
Chambers, Matt (author)
Johnson, James (author)
Hägglund, Emil (author)
Ye, Simon (author)
Valls Guimera, Roman (author)
Pruesse, Elmar (author)
Dunn, Augustine (author)
Parsons, Lance (author)
Patro, Rob (author)
Koppstein, David (author)
Grassi, Elena (author)
Wohlers, Inken (author)
Reynolds, Alex (author)
Cornwell, MacIntosh (author)
Stoler, Nicholas (author)
Blankenberg, Daniel (author)
He, Guowei (author)
Bargull, Marcel (author)
Junge, Alexander (author)
Farouni, Rick (author)
Freeberg, Mallory (author)
Singh, Sourav (author)
Bogema, Daniel (author)
Cumbo, Fabio (author)
Wang, Liang-Bo (author)
Larson, David (author)
Workentine, Matthew (author)
Kumar Devisetty, Upendra (author)
Laurent, Sacha (author)
Roger, Pierrick (author)
Garnier, Xavier (author)
Agren, Rasmus (author)
Khan, Aziz (author)
Eppley, John (author)
Li, Wei (author)
Stöcker, Bianca Katharina (author)
Rausch, Tobias (author)
Taylor, James (author)
Wright, Patrick (author)
Taranto, Adam (author)
Chicco, Davide (author)
Sennblad, Bengt (author)
Baaijens, Jasmijn (author)
Gopez, Matthew (author)
Abdennur, Nezar (author)
Milne, Iain (author)
Preussner, Jens (author)
Pinello, Luca (author)
Srivastava, Avi (author)
Chande, Aroon (author)
Kensche, Philip Reiner (author)
Pirola, Yuri (author)
Knudsen, Michael (author)
de Bruijn, Ino (author)
Blin, Kai (author)
Gonnella, Giorgio (author)
Enache, Oana (author)
Rai, Vivek (author)
Waters, Nicholas (author)
Hiltemann, Saskia (author)
Bendall, Matthew (author)
Stahl, Christoph (author)
Miles, Alistair (author)
Boursin, Yannick (author)
Perez-Riverol, Yasset (author)
Schmeier, Sebastian (author)
Clarke, Erik (author)
Arvai, Kevin (author)
Jung, Matthieu (author)
Di Domenico, Tomás (author)
Seiler, Julien (author)
Rasche, Eric (author)
Kornobis, Etienne (author)
Beisser, Daniela (author)
Rahmann, Sven (author)
Mikheyev, Alexander (author)
Tran, Camy (author)
Capellades, Jordi (author)
Schröder, Christopher (author)
Salatino, Adrian Emanuel (author)
Dirmeier, Simon (author)
Webster, Timothy (author)
Moskalenko, Oleksandr (author)
Stephen, Gordon (author)
Köster, Johannes (author)
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 (creator_code:org_t)
Cold Spring Harbor Laboratory, 2017
English 13 s.
  • Other publication (other academic/artistic)
Abstract Subject headings
Close  
  • We present Bioconda (https://bioconda.github.io), a distribution of bioinformatics software for the lightweight, multi-platform and language-agnostic package manager Conda. Currently, Bioconda offers a collection of over 3000 software packages, which is continuously maintained, updated, and extended by a growing global community of more than 200 contributors. Bioconda improves analysis reproducibility by allowing users to define isolated environments with defined software versions, all of which are easily installed and managed without administrative privileges.

Subject headings

NATURVETENSKAP  -- Data- och informationsvetenskap -- Bioinformatik (hsv//swe)
NATURAL SCIENCES  -- Computer and Information Sciences -- Bioinformatics (hsv//eng)
NATURVETENSKAP  -- Biologi -- Bioinformatik och systembiologi (hsv//swe)
NATURAL SCIENCES  -- Biological Sciences -- Bioinformatics and Systems Biology (hsv//eng)
MEDICIN OCH HÄLSOVETENSKAP  -- Annan medicin och hälsovetenskap -- Övrig annan medicin och hälsovetenskap (hsv//swe)
MEDICAL AND HEALTH SCIENCES  -- Other Medical and Health Sciences -- Other Medical and Health Sciences not elsewhere specified (hsv//eng)

Keyword

Bioinformatics
Bioinformatics tools
Computational biology
Software distribution

Publication and Content Type

ovr (subject category)
vet (subject category)

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By the author/editor
Grüning, Björn
Dale, Ryan
Sjödin, Andreas
Chapman, Brad
Rowe, Jillian
Tomkins-Tinch, C ...
show more...
Valieris, Renan
Caprez, Adam
Batut, Bérénice
Haudgaard, Mathi ...
Cokelaer, Thomas
Beauchamp, Kyle
Pedersen, Brent
Hoogstrate, Your ...
Bretaudeau, Anth ...
Ryan, Devon
Le Corguillé, Gi ...
Yusuf, Dilmurat
Luna-Valero, Seb ...
Kirchner, Rory
Brinda, Karel
Wollmann, Thomas
Raden, Martin
van Heeringen, S ...
Soranzo, Nicola
Pantano, Lorena
Charlop-Powers, ...
Unneberg, Per
De Smet, Matthia ...
Martin, Marcel
Von Kuster, Greg
Antao, Tiago
Miladi, Milad
Thornton, Kevin
Brueffer, Christ ...
van der Beek, Ma ...
Maticzka, Daniel
Blank, Clemens
Will, Sebastian
Gravouil, Kévin
Wolff, Joachim
Holtgrewe, Manue ...
Fallmann, Jörg
Piro, Vitor
Shlyakhter, Ilya
Yousif, Ayman
Mabon, Philip
Zhang, Xiao-Ou
Shen, Wei
Cabral, Jennifer
Thomas, Cristel
Enns, Eric
Brown, Joseph
Boekel, Jorrit
de Hollander, Ma ...
Kelleher, Jerome
Turaga, Nitesh
de Ruiter, Julia ...
Bouvier, Dave
Gladman, Simon
Choudhary, Saket
Harding, Nichola ...
Eggenhofer, Flor ...
Kratz, Arne
Fang, Zhuoqing
Kleinkauf, Rober ...
Timm, Henning
Cock, Peter
Seiler, Enrico
Brislawn, Colin
Nguyen, Hai
Bakken Stovner, ...
Ewels, Philip
Chambers, Matt
Johnson, James
Hägglund, Emil
Ye, Simon
Valls Guimera, R ...
Pruesse, Elmar
Dunn, Augustine
Parsons, Lance
Patro, Rob
Koppstein, David
Grassi, Elena
Wohlers, Inken
Reynolds, Alex
Cornwell, MacInt ...
Stoler, Nicholas
Blankenberg, Dan ...
He, Guowei
Bargull, Marcel
Junge, Alexander
Farouni, Rick
Freeberg, Mallor ...
Singh, Sourav
Bogema, Daniel
Cumbo, Fabio
Wang, Liang-Bo
Larson, David
Workentine, Matt ...
Kumar Devisetty, ...
Laurent, Sacha
Roger, Pierrick
Garnier, Xavier
Agren, Rasmus
Khan, Aziz
Eppley, John
Li, Wei
Stöcker, Bianca ...
Rausch, Tobias
Taylor, James
Wright, Patrick
Taranto, Adam
Chicco, Davide
Sennblad, Bengt
Baaijens, Jasmij ...
Gopez, Matthew
Abdennur, Nezar
Milne, Iain
Preussner, Jens
Pinello, Luca
Srivastava, Avi
Chande, Aroon
Kensche, Philip ...
Pirola, Yuri
Knudsen, Michael
de Bruijn, Ino
Blin, Kai
Gonnella, Giorgi ...
Enache, Oana
Rai, Vivek
Waters, Nicholas
Hiltemann, Saski ...
Bendall, Matthew
Stahl, Christoph
Miles, Alistair
Boursin, Yannick
Perez-Riverol, Y ...
Schmeier, Sebast ...
Clarke, Erik
Arvai, Kevin
Jung, Matthieu
Di Domenico, Tom ...
Seiler, Julien
Rasche, Eric
Kornobis, Etienn ...
Beisser, Daniela
Rahmann, Sven
Mikheyev, Alexan ...
Tran, Camy
Capellades, Jord ...
Schröder, Christ ...
Salatino, Adrian ...
Dirmeier, Simon
Webster, Timothy
Moskalenko, Olek ...
Stephen, Gordon
Köster, Johannes
show less...
About the subject
NATURAL SCIENCES
NATURAL SCIENCES
and Computer and Inf ...
and Bioinformatics
NATURAL SCIENCES
NATURAL SCIENCES
and Biological Scien ...
and Bioinformatics a ...
MEDICAL AND HEALTH SCIENCES
MEDICAL AND HEAL ...
and Other Medical an ...
and Other Medical an ...
By the university
Lund University

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