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The genetic basis f...
The genetic basis for ecological adaptation of the Atlantic herring revealed by genome sequencing
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- Martínez Barrio, Álvaro (author)
- Uppsala universitet,Science for Life Laboratory, SciLifeLab,Molekylär evolution,Institutionen för medicinsk biokemi och mikrobiologi
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- Lamichhaney, Sangeet, 1984- (author)
- Uppsala universitet,Institutionen för medicinsk biokemi och mikrobiologi,Science for Life Laboratory, SciLifeLab
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- Fan, Guangyi (author)
- State Key Laboratory of Quality Research in Chinese Medicine, Institute of Chinese Medical Sciences, University of Macau, Macau, China; BGI-Shenzhen, Shenzen, China; 5 College of Physics, Qingdao University, Qingdao, China
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- Rafati, Nima (author)
- Uppsala universitet,Institutionen för medicinsk biokemi och mikrobiologi,Science for Life Laboratory, SciLifeLab
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- Pettersson, Mats (author)
- Uppsala universitet,Institutionen för medicinsk biokemi och mikrobiologi,Science for Life Laboratory, SciLifeLab
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- Zhang, He (author)
- BGI-Shenzhen, Shenzen, China; College of Physics, Qingdao University, Qingdao, China
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- Dainat, Jacques (author)
- Uppsala universitet,Institutionen för medicinsk biokemi och mikrobiologi,Science for Life Laboratory, SciLifeLab
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- Ekman, Diana (author)
- Stockholms universitet,Institutionen för biokemi och biofysik,Science for Life Laboratory (SciLifeLab)
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- Höppner, Marc P. (author)
- Uppsala universitet,Institutionen för medicinsk biokemi och mikrobiologi,Science for Life Laboratory, SciLifeLab
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- Jern, Patric (author)
- Uppsala universitet,Institutionen för medicinsk biokemi och mikrobiologi,Science for Life Laboratory, SciLifeLab
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- Martin, Marcel (author)
- Stockholms universitet,Institutionen för biokemi och biofysik,Science for Life Laboratory (SciLifeLab)
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- Nystedt, Björn (author)
- Uppsala universitet,Molekylär evolution,Science for Life Laboratory, SciLifeLab
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- Liu, Xin (author)
- BGI-Shenzhen, Shenzen, China
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- Chen, Wenbin (author)
- BGI-Shenzhen, Shenzhen, China
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- Liang, Xinming (author)
- BGI-Shenzhen, Shenzhen, China
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- Shi, Chengcheng (author)
- BGI-Shenzhen, Shenzhen, China
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- Fu, Yuanyuan (author)
- BGI-Shenzhen, Shenzhen, China
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- Ma, Kailong (author)
- BGI-Shenzhen, Shenzhen, China
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- Zhan, Xiao (author)
- BGI-Shenzhen, Shenzhen, China
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- Feng, Chungang (author)
- Uppsala universitet,Institutionen för medicinsk biokemi och mikrobiologi,Science for Life Laboratory, SciLifeLab
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- Gustafson, Ulla (author)
- Swedish University of Agricultural Sciences,Sveriges lantbruksuniversitet,Institutionen för husdjursgenetik (HGEN),Department of Animal Breeding and Genetics
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- Rubin, Carl-Johan (author)
- Uppsala universitet,Institutionen för medicinsk biokemi och mikrobiologi,Science for Life Laboratory, SciLifeLab
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- Sällman Almén, Markus (author)
- Uppsala universitet,Institutionen för medicinsk biokemi och mikrobiologi,Science for Life Laboratory, SciLifeLab
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- Blass, Martina (author)
- Swedish University of Agricultural Sciences,Sveriges lantbruksuniversitet,Institutionen för akvatiska resurser,Department of Aquatic Resources
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- Casini, Michele (author)
- Swedish University of Agricultural Sciences,Sveriges lantbruksuniversitet,Institutionen för akvatiska resurser,Department of Aquatic Resources
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- Folkvord, Arild (author)
- Department of Biology, University of Bergen, Bergen, Norway; Hjort Center of Marine Ecosystem Dynamics, Bergen, Norway; Institute of Marine Research, Bergen, Norway
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- Laikre, Linda (author)
- Stockholms universitet,Zoologiska institutionen
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- Ryman, Nils (author)
- Stockholms universitet,Zoologiska institutionen
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- Lee, Simon Ming-Yuen Lee (author)
- State Key Laboratory of Quality Research in Chinese Medicine, Institute of Chinese Medical Sciences, University of Macau, Macao
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- Xu, Xun (author)
- BGI-Shenzhen, Shenzhen, China
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- Andersson, Leif (author)
- Swedish University of Agricultural Sciences,Sveriges lantbruksuniversitet,Uppsala universitet,Institutionen för medicinsk biokemi och mikrobiologi,Science for Life Laboratory, SciLifeLab,Department of Animal Breeding and Genetics, Swedish University of Agricultural Sciences, Uppsala, Sweden; Department of Veterinary Integrative Biosciences, Texas A&M University, Texas, United States,Institutionen för husdjursgenetik (HGEN)
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(creator_code:org_t)
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- 2016
- 2016
- English.
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In: eLIFE. - 2050-084X. ; 5
- Related links:
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https://doi.org/10.7...
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https://uu.diva-port... (primary) (Raw object)
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https://urn.kb.se/re...
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https://doi.org/10.7...
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https://res.slu.se/i...
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https://urn.kb.se/re...
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Abstract
Subject headings
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- Ecological adaptation is of major relevance to speciation and sustainable population management, but the underlying genetic factors are typically hard to study in natural populations due to genetic differentiation caused by natural selection being confounded with genetic drift in subdivided populations. Here, we use whole genome population sequencing of Atlantic and Baltic herring to reveal the underlying genetic architecture at an unprecedented detailed resolution for both adaptation to a new niche environment and timing of reproduction. We identify almost 500 independent loci associated with a recent niche expansion from marine (Atlantic Ocean) to brackish waters (Baltic Sea), and more than 100 independent loci showing genetic differentiation between spring- and autumn-spawning populations irrespective of geographic origin. Our results show that both coding and non-coding changes contribute to adaptation. Haplotype blocks, often spanning multiple genes and maintained by selection, are associated with genetic differentiation.
Subject headings
- LANTBRUKSVETENSKAPER -- Bioteknologi med applikationer på växter och djur -- Genetik och förädling inom lantbruksvetenskap (hsv//swe)
- AGRICULTURAL SCIENCES -- Agricultural Biotechnology -- Genetics and Breeding in Agricultural Sciences (hsv//eng)
- NATURVETENSKAP -- Biologi -- Evolutionsbiologi (hsv//swe)
- NATURAL SCIENCES -- Biological Sciences -- Evolutionary Biology (hsv//eng)
- NATURVETENSKAP -- Biologi -- Genetik (hsv//swe)
- NATURAL SCIENCES -- Biological Sciences -- Genetics (hsv//eng)
- LANTBRUKSVETENSKAPER -- Lantbruksvetenskap, skogsbruk och fiske -- Fisk- och akvakulturforskning (hsv//swe)
- AGRICULTURAL SCIENCES -- Agriculture, Forestry and Fisheries -- Fish and Aquacultural Science (hsv//eng)
- NATURVETENSKAP -- Biologi (hsv//swe)
- NATURAL SCIENCES -- Biological Sciences (hsv//eng)
Publication and Content Type
- ref (subject category)
- art (subject category)
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eLIFE
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- By the author/editor
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Martínez Barrio, ...
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Lamichhaney, San ...
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Fan, Guangyi
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Rafati, Nima
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Pettersson, Mats
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Zhang, He
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show more...
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Dainat, Jacques
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Ekman, Diana
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Höppner, Marc P.
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Jern, Patric
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Martin, Marcel
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Nystedt, Björn
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Liu, Xin
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Chen, Wenbin
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Liang, Xinming
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Shi, Chengcheng
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Fu, Yuanyuan
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Ma, Kailong
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Zhan, Xiao
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Feng, Chungang
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Gustafson, Ulla
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Rubin, Carl-Joha ...
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Sällman Almén, M ...
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Blass, Martina
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Casini, Michele
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Folkvord, Arild
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Laikre, Linda
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Ryman, Nils
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Lee, Simon Ming- ...
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Xu, Xun
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Andersson, Leif
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show less...
- About the subject
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- AGRICULTURAL SCIENCES
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AGRICULTURAL SCI ...
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and Agricultural Bio ...
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and Genetics and Bre ...
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- NATURAL SCIENCES
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NATURAL SCIENCES
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and Biological Scien ...
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and Evolutionary Bio ...
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- NATURAL SCIENCES
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NATURAL SCIENCES
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and Biological Scien ...
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and Genetics
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- AGRICULTURAL SCIENCES
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AGRICULTURAL SCI ...
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and Agriculture Fore ...
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and Fish and Aquacul ...
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- NATURAL SCIENCES
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NATURAL SCIENCES
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and Biological Scien ...
- Articles in the publication
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eLIFE
- By the university
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Uppsala University
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Swedish University of Agricultural Sciences
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Stockholm University