Sökning: onr:"swepub:oai:DiVA.org:kth-299289" >
Full-Length Transcr...
Full-Length Transcriptome of Thalassiosira weissflogii as a Reference Resource and Mining of Chitin-Related Genes
-
- Cheng, Haomiao (författare)
- Chinese Acad Sci, Qingdao 266071, Peoples R China.;Chinese Acad Sci, Shandong Prov Key Lab Expt Marine Biol, Ctr Ocean Megasci, Inst Oceanol, Qingdao 266071, Peoples R China.;Pilot Qingdao Natl Lab Marine Sci & Technol, Lab Marine Biol & Biotechnol, Qingdao 266237, Peoples R China.;Univ Chinese Acad Sci, Beijing 100049, Peoples R China.
-
- Bowler, Chris (författare)
- Univ PSL, Inst Biol ENS IBENS, Dept Biol, Ecole Normale Super,CNRS,INSERM, F-75005 Paris, France.
-
- Xing, Xiaohui (författare)
- KTH,Glykovetenskap,Univ Adelaide, Ctr Excellence Plant Cell Walls, Sch Agr Food & Wine, Australian Res Council, Waite Campus, Urrbrae 5064, Australia.;Univ Adelaide, Sch Agr Food & Wine, Adelaide Glyc, Waite Campus, Urrbrae 5064, Australia.
-
visa fler...
-
- Bulone, Vincent (författare)
- KTH,Glykovetenskap,Univ Adelaide, Ctr Excellence Plant Cell Walls, Sch Agr Food & Wine, Australian Res Council, Waite Campus, Urrbrae 5064, Australia.;Univ Adelaide, Sch Agr Food & Wine, Adelaide Glyc, Waite Campus, Urrbrae 5064, Australia.
-
- Shao, Zhanru (författare)
- Chinese Acad Sci, Qingdao 266071, Peoples R China.;Chinese Acad Sci, Shandong Prov Key Lab Expt Marine Biol, Ctr Ocean Megasci, Inst Oceanol, Qingdao 266071, Peoples R China.;Pilot Qingdao Natl Lab Marine Sci & Technol, Lab Marine Biol & Biotechnol, Qingdao 266237, Peoples R China.
-
- Duan, Delin (författare)
- Chinese Acad Sci, Qingdao 266071, Peoples R China.;Chinese Acad Sci, Shandong Prov Key Lab Expt Marine Biol, Ctr Ocean Megasci, Inst Oceanol, Qingdao 266071, Peoples R China.;Pilot Qingdao Natl Lab Marine Sci & Technol, Lab Marine Biol & Biotechnol, Qingdao 266237, Peoples R China.;Qingdao Bright Moon Seaweed Grp Co Ltd, State Key Lab Bioact Seaweed Subst, Qingdao 266400, Peoples R China.
-
visa färre...
-
Chinese Acad Sci, Qingdao 266071, Peoples R China;Chinese Acad Sci, Shandong Prov Key Lab Expt Marine Biol, Ctr Ocean Megasci, Inst Oceanol, Qingdao 266071, Peoples R China.;Pilot Qingdao Natl Lab Marine Sci & Technol, Lab Marine Biol & Biotechnol, Qingdao 266237, Peoples R China.;Univ Chinese Acad Sci, Beijing 100049, Peoples R China. Univ PSL, Inst Biol ENS IBENS, Dept Biol, Ecole Normale Super,CNRS,INSERM, F-75005 Paris, France. (creator_code:org_t)
- 2021-07-13
- 2021
- Engelska.
-
Ingår i: Marine Drugs. - : MDPI AG. - 1660-3397. ; 19:7
- Relaterad länk:
-
https://www.mdpi.com...
-
visa fler...
-
https://urn.kb.se/re...
-
https://doi.org/10.3...
-
visa färre...
Abstract
Ämnesord
Stäng
- beta-Chitin produced by diatoms is expected to have significant economic and ecological value due to its structure, which consists of parallel chains of chitin, its properties and the high abundance of diatoms. Nevertheless, few studies have functionally characterised chitin-related genes in diatoms owing to the lack of omics-based information. In this study, we first compared the chitin content of three representative Thalassiosira species. Cell wall glycosidic linkage analysis and chitin/chitosan staining assays showed that Thalassiosira weissflogii was an appropriate candidate chitin producer. A full-length (FL) transcriptome of T. weissflogii was obtained via PacBio sequencing. In total, the FL transcriptome comprised 23,362 annotated unigenes, 710 long non-coding RNAs (lncRNAs), 363 transcription factors (TFs), 3113 alternative splicing (AS) events and 3295 simple sequence repeats (SSRs). More specifically, 234 genes related to chitin metabolism were identified and the complete biosynthetic pathways of chitin and chitosan were explored. The information presented here will facilitate T. weissflogii molecular research and the exploitation of beta-chitin-derived high-value enzymes and products.
Ämnesord
- NATURVETENSKAP -- Biologi -- Biokemi och molekylärbiologi (hsv//swe)
- NATURAL SCIENCES -- Biological Sciences -- Biochemistry and Molecular Biology (hsv//eng)
Nyckelord
- PacBio sequencing
- full-length transcriptome
- Thalassiosira weissflogii
- chitin
- chitosan
Publikations- och innehållstyp
- ref (ämneskategori)
- art (ämneskategori)
Hitta via bibliotek
Till lärosätets databas