Global phylogeography and ancient evolution of the widespread human gut virus crAssphage

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Fältnamn	Indikatorer	Metadata
000		07475naa a2201693 4500
001		oai:DiVA.org:su-175024
003		SwePub
008		191104s2019 \| \|\|\|\|\|\|\|\|\|\|\|000 \|\|eng\|
024	7	a https://urn.kb.se/resolve?urn=urn:nbn:se:su:diva-1750242 URI
024	7	a https://doi.org/10.1038/s41564-019-0494-62 DOI
040		a (SwePub)su
041		a engb eng
042		9 SwePub
072	7	a ref2 swepub-contenttype
072	7	a art2 swepub-publicationtype
100	1	a Edwards, Robert A.4 aut
245	1 0	a Global phylogeography and ancient evolution of the widespread human gut virus crAssphage
264		c 2019-07-08
264	1	b Springer Science and Business Media LLC,c 2019
338		a print2 rdacarrier
520		a Microbiomes are vast communities of microorganisms and viruses that populate all natural ecosystems. Viruses have been considered to be the most variable component of microbiomes, as supported by virome surveys and examples of high genomic mosaicism. However, recent evidence suggests that the human gut virome is remarkably stable compared with that of other environments. Here, we investigate the origin, evolution and epidemiology of crAssphage, a widespread human gut virus. Through a global collaboration, we obtained DNA sequences of crAssphage from more than one-third of the world's countries and showed that the phylogeography of crAssphage is locally clustered within countries, cities and individuals. We also found fully colinear crAssphage-like genomes in both Old-World and New-World primates, suggesting that the association of crAssphage with primates may be millions of years old. Finally, by exploiting a large cohort of more than 1,000 individuals, we tested whether crAssphage is associated with bacterial taxonomic groups of the gut microbiome, diverse human health parameters and a wide range of dietary factors. We identified strong correlations with different clades of bacteria that are related to Bacteroidetes and weak associations with several diet categories, but no significant association with health or disease. We conclude that crAssphage is a benign cosmopolitan virus that may have coevolved with the human lineage and is an integral part of the normal human gut virome.
650	7	a MEDICIN OCH HÄLSOVETENSKAPx Medicinska och farmaceutiska grundvetenskaperx Mikrobiologi inom det medicinska området0 (SwePub)301092 hsv//swe
650	7	a MEDICAL AND HEALTH SCIENCESx Basic Medicinex Microbiology in the medical area0 (SwePub)301092 hsv//eng
700	1	a Vega, Alejandro A.4 aut
700	1	a Norman, Holly M.4 aut
700	1	a Ohaeri, Maria4 aut
700	1	a Levi, Kyle4 aut
700	1	a Dinsdale, Elizabeth A.4 aut
700	1	a Cinek, Ondrej4 aut
700	1	a Aziz, Ramy K.4 aut
700	1	a McNair, Katelyn4 aut
700	1	a Barr, Jeremy J.4 aut
700	1	a Bibby, Kyle4 aut
700	1	a Brouns, Stan J. J.4 aut
700	1	a Cazares, Adrian4 aut
700	1	a de Jonge, Patrick A.4 aut
700	1	a Desnues, Christelle4 aut
700	1	a Diaz Munoz, Samuel L.4 aut
700	1	a Fineran, Peter C.4 aut
700	1	a Kurilshikov, Alexander4 aut
700	1	a Lavigne, Rob4 aut
700	1	a Mazankova, Karla4 aut
700	1	a McCarthy, David T.4 aut
700	1	a Nobrega, Franklin L.4 aut
700	1	a Reyes Munoz, Alejandro4 aut
700	1	a Tapia, German4 aut
700	1	a Trefault, Nicole4 aut
700	1	a Tyakht, Alexander4 aut
700	1	a Vinuesa, Pablo4 aut
700	1	a Wagemans, Jeroen4 aut
700	1	a Zhernakova, Alexandra4 aut
700	1	a Aarestrup, Frank M.4 aut
700	1	a Ahmadov, Gunduz4 aut
700	1	a Alassaf, Abeer4 aut
700	1	a Anton, Josefa4 aut
700	1	a Asangba, Abigail4 aut
700	1	a Billings, Emma K.4 aut
700	1	a Cantu, Vito Adrian4 aut
700	1	a Carlton, Jane M.4 aut
700	1	a Cazares, Daniel4 aut
700	1	a Cho, Gyu-Sung4 aut
700	1	a Condeff, Tess4 aut
700	1	a Cortes, Pilar4 aut
700	1	a Cranfield, Mike4 aut
700	1	a Cuevas, Daniel A.4 aut
700	1	a De la Iglesia, Rodrigo4 aut
700	1	a Decewicz, Przemyslaw4 aut
700	1	a Doane, Michael P.4 aut
700	1	a Dominy, Nathaniel J.4 aut
700	1	a Dziewit, Lukasz4 aut
700	1	a Elwasila, Bashir Mukhtar4 aut
700	1	a Murat Eren, A.4 aut
700	1	a Franz, Charles4 aut
700	1	a Fu, Jingyuan4 aut
700	1	a Garcia-Aljaro, Cristina4 aut
700	1	a Ghedin, Elodie4 aut
700	1	a Gulino, Kristen M.4 aut
700	1	a Haggerty, John M.4 aut
700	1	a Head, Steven R.4 aut
700	1	a Hendriksen, Rene S.4 aut
700	1	a Hill, Colin4 aut
700	1	a Hyoty, Heikki4 aut
700	1	a Ilina, Elena N.4 aut
700	1	a Irwin, Mitchell T.4 aut
700	1	a Jeffries, Thomas C.4 aut
700	1	a Jofre, Juan4 aut
700	1	a Junge, Randall E.4 aut
700	1	a Kelley, Scott T.4 aut
700	1	a Mirzaei, Mohammadali Khan4 aut
700	1	a Kowalewski, Martin4 aut
700	1	a Kumaresan, Deepak4 aut
700	1	a Leigh, Steven R.4 aut
700	1	a Lipson, David4 aut
700	1	a Lisitsyna, Eugenia S.4 aut
700	1	a Llagostera, Montserrat4 aut
700	1	a Maritz, Julia M.4 aut
700	1	a Marr, Linsey C.4 aut
700	1	a McCann, Angela4 aut
700	1	a Molshanski-Mor, Shahar4 aut
700	1	a Monteiro, Silvia4 aut
700	1	a Moreira-Grez, Benjamin4 aut
700	1	a Morris, Megan4 aut
700	1	a Mugisha, Lawrence4 aut
700	1	a Muniesa, Maite4 aut
700	1	a Neve, Horst4 aut
700	1	a Nam-phuong, Nguyen4 aut
700	1	a Nigro, Olivia D.4 aut
700	1	a Nilsson, Anders S.u Stockholms universitet,Institutionen för molekylär biovetenskap, Wenner-Grens institut4 aut0 (Swepub:su)annil
700	1	a O'Connell, Taylor4 aut
700	1	a Odeh, Rasha4 aut
700	1	a Oliver, Andrew4 aut
700	1	a Piuri, Mariana4 aut
700	1	a Prussin, Aaron J.4 aut
700	1	a Qimron, Udi4 aut
700	1	a Quan, Zhe-Xue4 aut
700	1	a Rainetova, Petra4 aut
700	1	a Ramirez-Rojas, Adan4 aut
700	1	a Raya, Raul4 aut
700	1	a Reasor, Kim4 aut
700	1	a Rice, Gillian A. O.4 aut
700	1	a Rossi, Alessandro4 aut
700	1	a Santos, Ricardo4 aut
700	1	a Shimashita, John4 aut
700	1	a Stachler, Elyse N.4 aut
700	1	a Stene, Lars C.4 aut
700	1	a Strain, Ronan4 aut
700	1	a Stumpf, Rebecca4 aut
700	1	a Torres, Pedro J.4 aut
700	1	a Twaddle, Alan4 aut
700	1	a Ibekwe, MaryAnn Ugochi4 aut
700	1	a Villagra, Nicolas4 aut
700	1	a Wandro, Stephen4 aut
700	1	a White, Bryan4 aut
700	1	a Whiteley, Andy4 aut
700	1	a Whiteson, Katrine L.4 aut
700	1	a Wijmenga, Cisca4 aut
700	1	a Zambrano, Maria M.4 aut
700	1	a Zschach, Henrike4 aut
700	1	a Dutilh, Bas E.4 aut
710	2	a Stockholms universitetb Institutionen för molekylär biovetenskap, Wenner-Grens institut4 org
773	0	t Nature Microbiologyd : Springer Science and Business Media LLCg 4:10, s. 1727-1736q 4:10<1727-1736x 2058-5276
856	4	u https://europepmc.org/articles/pmc7440971?pdf=render
856	4 8	u https://urn.kb.se/resolve?urn=urn:nbn:se:su:diva-175024
856	4 8	u https://doi.org/10.1038/s41564-019-0494-6

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Av författaren/redakt...: Edwards, Robert ...; Vega, Alejandro ...; Norman, Holly M.; Ohaeri, Maria; Levi, Kyle; Dinsdale, Elizab ...; visa fler...; Cinek, Ondrej; Aziz, Ramy K.; McNair, Katelyn; Barr, Jeremy J.; Bibby, Kyle; Brouns, Stan J. ...; Cazares, Adrian; de Jonge, Patric ...; Desnues, Christe ...; Diaz Munoz, Samu ...; Fineran, Peter C ...; Kurilshikov, Ale ...; Lavigne, Rob; Mazankova, Karla; McCarthy, David ...; Nobrega, Frankli ...; Reyes Munoz, Ale ...; Tapia, German; Trefault, Nicole; Tyakht, Alexande ...; Vinuesa, Pablo; Wagemans, Jeroen; Zhernakova, Alex ...; Aarestrup, Frank ...; Ahmadov, Gunduz; Alassaf, Abeer; Anton, Josefa; Asangba, Abigail; Billings, Emma K ...; Cantu, Vito Adri ...; Carlton, Jane M.; Cazares, Daniel; Cho, Gyu-Sung; Condeff, Tess; Cortes, Pilar; Cranfield, Mike; Cuevas, Daniel A ...; De la Iglesia, R ...; Decewicz, Przemy ...; Doane, Michael P ...; Dominy, Nathanie ...; Dziewit, Lukasz; Elwasila, Bashir ...; Murat Eren, A.; Franz, Charles; Fu, Jingyuan; Garcia-Aljaro, C ...; Ghedin, Elodie; Gulino, Kristen ...; Haggerty, John M ...; Head, Steven R.; Hendriksen, Rene ...; Hill, Colin; Hyoty, Heikki; Ilina, Elena N.; Irwin, Mitchell ...; Jeffries, Thomas ...; Jofre, Juan; Junge, Randall E ...; Kelley, Scott T.; Mirzaei, Mohamma ...; Kowalewski, Mart ...; Kumaresan, Deepa ...; Leigh, Steven R.; Lipson, David; Lisitsyna, Eugen ...; Llagostera, Mont ...; Maritz, Julia M.; Marr, Linsey C.; McCann, Angela; Molshanski-Mor, ...; Monteiro, Silvia; Moreira-Grez, Be ...; Morris, Megan; Mugisha, Lawrenc ...; Muniesa, Maite; Neve, Horst; Nam-phuong, Nguy ...; Nigro, Olivia D.; Nilsson, Anders ...; O'Connell, Taylo ...; Odeh, Rasha; Oliver, Andrew; Piuri, Mariana; Prussin, Aaron J ...; Qimron, Udi; Quan, Zhe-Xue; Rainetova, Petra; Ramirez-Rojas, A ...; Raya, Raul; Reasor, Kim; Rice, Gillian A. ...; Rossi, Alessandr ...; Santos, Ricardo; Shimashita, John; Stachler, Elyse ...; Stene, Lars C.; Strain, Ronan; Stumpf, Rebecca; Torres, Pedro J.; Twaddle, Alan; Ibekwe, MaryAnn ...; Villagra, Nicola ...; Wandro, Stephen; White, Bryan; Whiteley, Andy; Whiteson, Katrin ...; Wijmenga, Cisca; Zambrano, Maria ...; Zschach, Henrike; Dutilh, Bas E.; visa färre...

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