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MASQOT-GUI :
MASQOT-GUI : spot quality assessment for the two-channel microarray platform
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- Bylesjö, Max (författare)
- Umeå universitet,Kemiska institutionen
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- Sjödin, Andreas (författare)
- Umeå universitet,Institutionen för fysiologisk botanik,Umeå Plant Science Centre (UPSC)
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- Eriksson, Daniel (författare)
- Umeå universitet,Umeå Plant Science Centre (UPSC)
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- Antti, Henrik (författare)
- Umeå universitet,Kemiska institutionen
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- Moritz, Thomas (författare)
- Umeå universitet,Umeå Plant Science Centre (UPSC)
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- Jansson, Stefan, 1959- (författare)
- Umeå universitet,Institutionen för fysiologisk botanik,Umeå Plant Science Centre (UPSC)
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- Trygg, Johan (författare)
- Umeå universitet,Kemiska institutionen,Computational Life Science Cluster (CLiC)
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(creator_code:org_t)
- 2006-08-09
- 2006
- Engelska.
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Ingår i: Bioinformatics. - : Oxford University Press (OUP). - 1367-4803 .- 1367-4811. ; 22:20, s. 2554-2555
- Relaterad länk:
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http://www.ncbi.nlm....
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https://academic.oup...
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https://urn.kb.se/re...
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https://doi.org/10.1...
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Abstract
Ämnesord
Stäng
- MASQOT-GUI provides an open-source, platform-independent software pipeline for two-channel microarray spot quality control. This includes gridding, segmentation, quantification, quality assessment and data visualization. It hosts a set of independent applications, with interactions between the tools as well as import and export support for external software. The implementation of automated multivariate quality control assessment, which is a unique feature of MASQOT-GUI, is based on the previously documented and evaluated MASQOT methodology. Further abilities of the application are outlined and illustrated. AVAILABILITY: MASQOT-GUI is Java-based and licensed under the GNU LGPL. Source code and installation files are available for download at http://masqot-gui.sourceforge.net/
Ämnesord
- NATURVETENSKAP -- Biologi (hsv//swe)
- NATURAL SCIENCES -- Biological Sciences (hsv//eng)
Nyckelord
- Computer Graphics
- In Situ Hybridization; Fluorescence/instrumentation/methods/standards
- Information Storage and Retrieval/*methods
- Oligonucleotide Array Sequence Analysis/*instrumentation/*methods/standards
- Quality Control
- Software
- Spectrometry; Fluorescence/instrumentation/*methods/standards
- User-Computer Interface
Publikations- och innehållstyp
- ref (ämneskategori)
- art (ämneskategori)
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