Sökning: onr:"swepub:oai:DiVA.org:umu-176693" > The complete chloro...
Fältnamn | Indikatorer | Metadata |
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000 | 03681naa a2200517 4500 | |
001 | oai:DiVA.org:umu-176693 | |
003 | SwePub | |
008 | 201114s2017 | |||||||||||000 ||eng| | |
024 | 7 | a https://urn.kb.se/resolve?urn=urn:nbn:se:umu:diva-1766932 URI |
024 | 7 | a https://doi.org/10.3389/fpls.2017.003042 DOI |
040 | a (SwePub)umu | |
041 | a engb eng | |
042 | 9 SwePub | |
072 | 7 | a ref2 swepub-contenttype |
072 | 7 | a art2 swepub-publicationtype |
100 | 1 | a Asaf, Sajjad4 aut |
245 | 1 0 | a The complete chloroplast genome of wild rice (Oryza minuta) and its comparison to related species |
264 | c 2017-03-07 | |
264 | 1 | b Frontiers Media S.A.c 2017 |
338 | a electronic2 rdacarrier | |
520 | a Oryza minuta, a tetraploid wild relative of cultivated rice (family Poaceae), possesses a BBCC genome and contains genes that confer resistance to bacterial blight (BB) and white-backed (WBPH) and brown (BPH) plant hoppers. Based on the importance of this wild species, this study aimed to understand the phylogenetic relationships of O. minuta with other Oryza species through an in-depth analysis of the composition and diversity of the chloroplast (cp) genome. The analysis revealed a cp genome size of 135,094 bp with a typical quadripartite structure and consisting of a pair of inverted repeats separated by small and large single copies, 139 representative genes, and 419 randomly distributed microsatellites. The genomic organization, gene order, GC content and codon usage are similar to those of typical angiosperm cp genomes. Approximately 30 forward, 28 tandem and 20 palindromic repeats were detected in the O. minuta cp genome. Comparison of the complete O. minuta cp genome with another eleven Oryza species showed a high degree of sequence similarity and relatively high divergence of intergenic spacers. Phylogenetic analyses were conducted based on the complete genome sequence, 65 shared genes and matK gene showed same topologies and O. minuta forms a single clade with parental O. punctata. Thus, the complete O. minuta cp genome provides interesting insights and valuable information that can be used to identify related species and reconstruct its phylogeny. | |
650 | 7 | a LANTBRUKSVETENSKAPERx Bioteknologi med applikationer på växter och djurx Växtbioteknologi0 (SwePub)404012 hsv//swe |
650 | 7 | a AGRICULTURAL SCIENCESx Agricultural Biotechnologyx Plant Biotechnology0 (SwePub)404012 hsv//eng |
653 | a wild rice (Oryza minuta) | |
653 | a cp genome | |
653 | a repeat analysis | |
653 | a codon usage | |
653 | a phylogeny | |
653 | a sequence divergence | |
653 | a SSRs | |
700 | 1 | a Waqas, Muhammad4 aut |
700 | 1 | a Khan, Abdul L.4 aut |
700 | 1 | a Khan, Muhammad A.4 aut |
700 | 1 | a Kang, Sang-Mo4 aut |
700 | 1 | a Imran, Qari Muhammadu School of Applied Biosciences, Kyungpook National University, Daegu, South Korea4 aut0 (Swepub:umu)muim0025 |
700 | 1 | a Shahzad, Raheem4 aut |
700 | 1 | a Bilal, Saqib4 aut |
700 | 1 | a Yun, Byung-Wook4 aut |
700 | 1 | a Lee, In-Jung4 aut |
710 | 2 | a School of Applied Biosciences, Kyungpook National University, Daegu, South Korea4 org |
773 | 0 | t Frontiers in Plant Scienced : Frontiers Media S.A.g 8q 8x 1664-462X |
856 | 4 | u https://doi.org/10.3389/fpls.2017.00304y Fulltext |
856 | 4 | u https://umu.diva-portal.org/smash/get/diva2:1500957/FULLTEXT01.pdfx primaryx Raw objecty fulltext:print |
856 | 4 | u https://www.frontiersin.org/articles/10.3389/fpls.2017.00304/pdf |
856 | 4 8 | u https://urn.kb.se/resolve?urn=urn:nbn:se:umu:diva-176693 |
856 | 4 8 | u https://doi.org/10.3389/fpls.2017.00304 |
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