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Cross-Species Appli...
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Shafer, Aaron B. A.Uppsala universitet,Evolutionsbiologi
(författare)
Cross-Species Application of SNP Chips is Not Suitable for Identifying Runs of Homozygosity
- Artikel/kapitelEngelska2016
Förlag, utgivningsår, omfång ...
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2016-01-15
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Oxford University Press (OUP),2016
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LIBRIS-ID:oai:DiVA.org:uu-284642
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https://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-284642URI
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https://doi.org/10.1093/jhered/esv137DOI
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Språk:engelska
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Sammanfattning på:engelska
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Ämneskategori:art swepub-publicationtype
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Cross-species application of single-nucleotide polymorphism (SNP) chips is a valid, relatively cost-effective alternative to the high-throughput sequencing methods generally required to obtain a genome-wide sampling of polymorphisms. Kharzinova et al. (2015) examined the applicability of SNP chips developed in domestic bovids (cattle and sheep) to a semi-wild cervid (reindeer). The ancestors of bovids and cervids diverged between 20 and 30 million years ago (Hassanin and Douzery 2003; Bibi et al. 2013). Empirical work has shown that for a SNP chip developed in a bovid and applied to a cervid species, approximately 50% genotype success with 1% of the loci being polymorphic is expected (Miller et al. 2012). The genotyping of Kharzinova et al. (2015) follows this pattern; however, these data are not appropriate for identifying runs of homozygosity (ROH) and can be problematic for estimating linkage disequilibrium (LD) and we caution readers in this regard.
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Miller, Joshua M.Yale Univ, Dept Ecol & Evolutionary Biol, New Haven, CT USA.
(författare)
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Kardos, MartyUppsala universitet,Evolutionsbiologi(Swepub:uu)marka787
(författare)
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Uppsala universitetEvolutionsbiologi
(creator_code:org_t)
Sammanhörande titlar
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Ingår i:Journal of Heredity: Oxford University Press (OUP)107:2, s. 193-1950022-15031465-7333
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