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Sökning: onr:"swepub:oai:lup.lub.lu.se:763d9716-047a-4bff-a09d-c6a288dd0949" > The HUPO proteomics...

LIBRIS Formathandbok  (Information om MARC21)
FältnamnIndikatorerMetadata
00003721naa a2200481 4500
001oai:lup.lub.lu.se:763d9716-047a-4bff-a09d-c6a288dd0949
003SwePub
008160401s2013 | |||||||||||000 ||eng|
0247 a https://lup.lub.lu.se/record/36364912 URI
0247 a https://doi.org/10.1093/database/bat0092 DOI
040 a (SwePub)lu
041 a engb eng
042 9 SwePub
072 7a art2 swepub-publicationtype
072 7a ref2 swepub-contenttype
1001 a Mayer, Gerhard4 aut
2451 0a The HUPO proteomics standards initiative-mass spectrometry controlled vocabulary
264 c 2013-03-12
264 1b Oxford University Press (OUP),c 2013
520 a Controlled vocabularies (CVs), i.e. a collection of predefined terms describing a modeling domain, used for the semantic annotation of data, and ontologies are used in structured data formats and databases to avoid inconsistencies in annotation, to have a unique (and preferably short) accession number and to give researchers and computer algorithms the possibility for more expressive semantic annotation of data. The Human Proteome Organization (HUPO)-Proteomics Standards Initiative (PSI) makes extensive use of ontologies/CVs in their data formats. The PSI-Mass Spectrometry (MS) CV contains all the terms used in the PSI MS-related data standards. The CV contains a logical hierarchical structure to ensure ease of maintenance and the development of software that makes use of complex semantics. The CV contains terms required for a complete description of an MS analysis pipeline used in proteomics, including sample labeling, digestion enzymes, instrumentation parts and parameters, software used for identification and quantification of peptides/proteins and the parameters and scores used to determine their significance. Owing to the range of topics covered by the CV, collaborative development across several PSI working groups, including proteomics research groups, instrument manufacturers and software vendors, was necessary. In this article, we describe the overall structure of the CV, the process by which it has been developed and is maintained and the dependencies on other ontologies.
650 7a MEDICIN OCH HÄLSOVETENSKAPx Medicinska och farmaceutiska grundvetenskaperx Immunologi inom det medicinska området0 (SwePub)301102 hsv//swe
650 7a MEDICAL AND HEALTH SCIENCESx Basic Medicinex Immunology in the medical area0 (SwePub)301102 hsv//eng
7001 a Montecchi-Palazzi, Luisa4 aut
7001 a Ovelleiro, David4 aut
7001 a Jones, Andrew R.4 aut
7001 a Binz, Pierre-Alain4 aut
7001 a Deutsch, Eric W.4 aut
7001 a Chambers, Matthew4 aut
7001 a Kallhardt, Marius4 aut
7001 a Levander, Fredriku Lund University,Lunds universitet,Institutionen för immunteknologi,Institutioner vid LTH,Lunds Tekniska Högskola,Department of Immunotechnology,Departments at LTH,Faculty of Engineering, LTH4 aut0 (Swepub:lu)tmb-fle
7001 a Shofstahl, James4 aut
7001 a Orchard, Sandra4 aut
7001 a Vizcaino, Juan Antonio4 aut
7001 a Hermjakob, Henning4 aut
7001 a Stephan, Christian4 aut
7001 a Meyer, Helmut E.4 aut
7001 a Eisenacher, Martin4 aut
7102 a Institutionen för immunteknologib Institutioner vid LTH4 org
7730 t Database: the journal of biological databases and curationd : Oxford University Press (OUP)g , s. 009-009q <009-009x 1758-0463
8564 u http://dx.doi.org/10.1093/database/bat009x freey FULLTEXT
8564 u https://doi.org/10.1093/database/bat009
8564 8u https://lup.lub.lu.se/record/3636491
8564 8u https://doi.org/10.1093/database/bat009

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