| 1. |
- Carreno-Quintero, Natalia, et al.
(author)
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Non-targeted discovery of high-value bio-products in Nicotiana glauca L : a potential renewable plant feedstock
- 2024
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In: Bioresources and bioprocessing. - : Springer Nature. - 2197-4365. ; 11:1
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Journal article (peer-reviewed)abstract
- The evaluation of plant-based feedstocks is an important aspect of biorefining. Nicotiana glauca is a solanaceous, non-food crop that produces large amounts of biomass and is well adapted to grow in suboptimal conditions. In the present article, compatible sequential solvent extractions were applied to N. glauca leaves to enable the generation of enriched extracts containing higher metabolite content comparing to direct leaf extracts. Typically, between 60 to 100 metabolite components were identified within the fractions. The occurrence of plant fatty acids, fatty acid alcohols, alkanes, sterols and terpenoids was detected by gas liquid chromatography-mass spectrometry (GC-MS) and metabolite identification was confirmed by comparison of physico-chemical properties displayed by available authentic standards. Collectively, co-products such waxes, oils, fermentable sugars, and terpenoids were all identified and quantified. The enriched fractions of N. glauca revealed a high level of readily extractable hydrocarbons, oils and high value co-products. In addition, the saccharification yield and cell wall composition analyses in the stems revealed the potential of the residue material as a promising lignocellulosic substrate for the production of fermentable sugars. In conclusion a multifractional cascade for valuable compounds/commodities has been development, that uses N. glauca biomass. These data have enabled the evaluation of N. glauca material as a potential feedstock for biorefining.
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| 2. |
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| 3. |
- Liu, Shentan, et al.
(author)
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Effects of bioelectricity generation processes on methane emission and bacterial community in wetland and carbon fate analysis
- 2022
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In: Bioresources and Bioprocessing. - : Springer Science and Business Media LLC. - 2197-4365. ; 9:1
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Journal article (peer-reviewed)abstract
- Wetlands are an important carbon sink for greenhouse gases (GHGs), and embedding microbial fuel cell (MFC) into constructed wetland (CW) has become a new technology to control methane (CH4) emission. Rhizosphere anode CW–MFC was constructed by selecting rhizome-type wetland plants with strong hypoxia tolerance, which could provide photosynthetic organics as alternative fuel. Compared with non-planted system, CH4 emission flux and power output from the planted CW–MFC increased by approximately 0.48 ± 0.02 mg/(m2·h) and 1.07 W/m3, respectively. The CH4 emission flux of the CW–MFC operated under open-circuit condition was approximately 0.46 ± 0.02 mg/(m2·h) higher than that under closed-circuit condition. The results indicated that plants contributed to the CH4 emission from the CW–MFC, especially under open-circuit mode conditions. The CH4 emission from the CW–MFC was proportional to external resistance, and it increased by 0.67 ± 0.01 mg/(m2·h) when the external resistance was adjusted from 100 to 1000 Ω. High throughput sequencing further showed that there was a competitive relationship between electrogenic bacteria and methanogens. The flora abundance of electrogenic bacteria was high, while methanogens mainly consisted of Methanothrix, Methanobacterium and Methanolinea. The form and content of element C were analysed from solid phase, liquid phase and gas phase. It was found that a large amount of carbon source (TC = 254.70 mg/L) was consumed mostly through microbial migration and conversion, and carbon storage and GHGs emission accounted for 60.38% and 35.80%, respectively. In conclusion, carbon transformation in the CW–MFC can be properly regulated via competition of microorganisms driven by environmental factors, which provides a new direction and idea for the control of CH4 emission from wetlands. Graphical Abstract: [Figure not available: see fulltext.].
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| 4. |
- Luo, Hongzhen, et al.
(author)
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Prediction of phenolic compounds and glucose content from dilute inorganic acid pretreatment of lignocellulosic biomass using artificial neural network modeling
- 2021
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In: Bioresources and Bioprocessing. - : Springer Science and Business Media Deutschland GmbH. - 2197-4365. ; 8:1
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Journal article (peer-reviewed)abstract
- Dilute inorganic acids hydrolysis is one of the most promising pretreatment strategies with high recovery of fermentable sugars and low cost for sustainable production of biofuels and chemicals from lignocellulosic biomass. The diverse phenolics derived from lignin degradation during pretreatment are the main inhibitors for enzymatic hydrolysis and fermentation. However, the content features of derived phenolics and produced glucose under different conditions are still unclear due to the highly non-linear characteristic of biomass pretreatment. Here, an artificial neural network (ANN) model was developed for simultaneous prediction of the derived phenolic contents (CPhe) and glucose yield (CGlc) in corn stover hydrolysate before microbial fermentation by integrating dilute acid pretreatment and enzymatic hydrolysis. Six processing parameters including inorganic acid concentration (CIA), pretreatment temperature (T), residence time (t), solid-to-liquid ratio (RSL), kinds of inorganic acids (kIA), and enzyme loading dosage (E) were used as input variables. The CPhe and CGlc were set as the two output variables. An optimized topology structure of 6–12-2 in the ANN model was determined by comparing root means square errors, which has a better prediction efficiency for CPhe (R2 = 0.904) and CGlc (R2 = 0.906). Additionally, the relative importance of six input variables on CPhe and CGlc was firstly calculated by the Garson equation with net weight matrixes. The results indicated that CIA had strong effects (22%-23%) on CPhe or CGlc, then followed by E and T. In conclusion, the findings provide new insights into the sustainable development and inverse optimization of biorefinery process from ANN modeling perspectives. Graphical Abstract: [Figure not available: see fulltext.]. © 2021, The Author(s).
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| 5. |
- Ortiz-Veizan, Nancy, et al.
(author)
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Improvements of poly(3-hydroxybutyrate) production in an air-lift reactor using simple production media
- 2020
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In: Bioresources And Bioprocessing. - : Springer. - 2197-4365. ; 7:1
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Journal article (peer-reviewed)abstract
- Background: Halomonas boliviensis is a halophilic microorganism that accumulates poly(3-hydroxybutyrate) (PHB) using different carbons sources when nitrogen is depleted from the culture medium. This work presents an improved production of PHB using an air-lift reactor (ALR) that was fed with a concentrated solution of a carbon source, and was supplemented with an adequate airflow rate. Results: Simple production media were used to study PHB production by H. boliviensis in an ALR. Glucose was first used as the main carbon source and was fed during the exponential phase of cell growth. The maximum CDW and PHB content were 31.7 g/L and 51 wt%, respectively, when the airflow rate entering the reactor varied between 0.5 and 1.2 L/min. Changing the air inflow to 0.5-0.9 L/min resulted in an improvement in PHB accumulation (62 wt%). A cultivation was performed by using the latter range of airflow rate and feeding glucose only when nitrogen was depleted from the medium; a considerable enhancement in PHB content (72 wt%) and CDW (27 g/L) was achieved under these conditions. Moreover, PHB was also produced using molasses as the main carbon source. Residual cell mass was about the same to that achieved with glucose, however the PHB content (52 wt%) was lower. Conclusions: PHB production by H. boliviensis in an ALR using a simple medium is possible. CDW and PHB content in H. boliviensis can be improved with respect to batch cultivations previously reported when a carbon source is fed to the reactor. The best strategy for the production of PHB consisted of starting the cultivation in a batch mode while glutamate was present in the medium; glucose should be fed when glutamate is depleted from the medium to keep an excess of the carbon source during the synthesis of PHB.
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| 6. |
- Peciulyte, Ausra, 1986, et al.
(author)
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Storage and handling of pretreated lignocellulose affects the redox chemistry during subsequent enzymatic saccharification
- 2020
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In: Bioresources and Bioprocessing. - : Springer Science and Business Media LLC. - 2197-4365. ; 7:1
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Journal article (peer-reviewed)abstract
- The decomposition of lignocellulose in nature, as well as when used as feedstock in industrial settings, takes place in a dynamic system of biotic and abiotic reactions. In the present study, the impact of abiotic reactions during the storage of pretreated lignocellulose on the efficiency of subsequent saccharification was investigated. Abiotic decarboxylation was higher in steam-pretreated wheat straw (SWS, up till 1.5% CO2) than in dilute-acid-catalysed steam-pretreated forestry residue (SFR, up till 3.2% CO2) which could be due to higher iron content in SFR and there was no significant CO2 production in warm-water-washed slurries. Unwashed slurries rapidly consumed O2 during incubation at 50 °C; the behaviour was more dependent on storage conditions in case of SWS than SFR slurries. There was a pH drop in the slurries which did not correlate with acetic acid release. Storage of SWS under aerobic conditions led to oxidation of the substrate and reduced the extent of enzymatic saccharification by Cellic® CTec3. Catalase had no effect on the fractional conversion of the aerobically stored substrate, suggesting that the lower fractional conversion was due to reduced activity of the lytic polysaccharide monooxygenase component during saccharification. The fractional conversion of SFR was low in all cases, and cellulose hydrolysis ceased before the first sampling point. This was possibly due to excessive pretreatment of the forest residues. The conditions at which pretreated lignocellulose are stored after pretreatment significantly influenced the extent and kind of abiotic reactions that take place during storage. This in turn influenced the efficiency of subsequent saccharification. Pretreated substrates for laboratory testing must, therefore, be stored in a manner that minimizes abiotic oxidation to ensure that the properties of the substrate resemble those in an industrial setting, where pretreated lignocellulose is fed almost directly into the saccharification vessel.[Figure not available: see fulltext.].
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| 7. |
- Rigo, Serena, et al.
(author)
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Decorating Nanostructured Surfaces with Antimicrobial Peptides to Efficiently Fight Bacteria
- 2020
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In: Bioresources and Bioprocessing. - : American Chemical Society (ACS). - 2197-4365. ; 3:3, s. 1533-1543
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Journal article (peer-reviewed)abstract
- With conventional antibiotic therapies being increasingly ineffective, bacterial infections with subsequent biofilm formation represent a global threat to human health. Here, an active and a passive strategy based on polymeric micelles were combined to fight bacterial growth. The passive strategy involved covalent immobilization of polymeric micelles through Michael addition between exposed maleimide and thiol functionalized surfaces. Compared to the bare surface, micelle-decorated surfaces showed reduced adherence and survival of bacteria. To extend this passive defense against bacteria with an active strategy, the immobilized micelles were equipped with the antimicrobial peptide KYE28 (KYEITTIHNLFRKLTHRLFRRNFGYTLR). The peptide interacted nonspecifically with the immobilized micelles where it retained its antimicrobial property. The successful surface decoration with KYE28 was demonstrated by a combination of X-ray photoelectron spectroscopy and quartz crystal microbalance with dissipation monitoring. The initial antimicrobial activity of the nanostructured surfaces against Escherichia coli was found to be increased by the presence of KYE28. The combination of the active and passive strategy represents a straightforward modular approach that can easily be adapted, for example, by exchanging the antimicrobial peptide to optimize potency against challenging bacterial strains, and/or to simultaneously achieve antimicrobial and anti-infection properties.
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| 8. |
- Van Thuoc, Doan, et al.
(author)
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Polyhydroxyalkanoate production from rice straw hydrolysate obtained by alkaline pretreatment and enzymatic hydrolysis using Bacillus strains isolated from decomposing straw
- 2021
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In: Bioresources and Bioprocessing. - : Springer Science and Business Media LLC. - 2197-4365. ; 8:1
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Journal article (peer-reviewed)abstract
- Rice straw is an important low-cost feedstock for bio-based economy. This report presents a study in which rice straw was used both as a source for isolation of bacteria producing the biodegradable polyester polyhydroxyalkanoate (PHA), as well as the carbon source for the production of the polymer by the isolated bacteria. Of the 100 bacterial isolates, seven were found to be positive for PHA production by Nile blue staining and were identified as Bacillus species by 16S rRNA gene sequence analysis. Three isolates showed 100% sequence identity to B. cereus, one to B. paranthracis, two with 99 and 100% identity to B. anthracis, while one was closely similar to B. thuringiensis. For use in PHA production, rice straw was subjected to mild alkaline pretreatment followed by enzymatic hydrolysis. Comparison of pretreatment by 2% sodium hydroxide, 2% calcium hydroxide and 20% aqueous ammonia, respectively, at different temperatures showed maximum weight loss with NaOH at 80 °C for 5 h, but ammonia for 15 h at 80 °C led to highest lignin removal of 63%. The ammonia-pretreated rice straw also led to highest release of total reducing sugar up to 92% on hydrolysis by a cocktail of cellulases and hemicellulases at 50 °C. Cultivation of the Bacillus isolates on the pretreated rice straw revealed highest PHA content of 59.3 and 46.4%, and PHA concentration of 2.96 and 2.51 g/L by Bacillus cereus VK92 and VK98, respectively. [Figure not available: see fulltext.].
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| 9. |
- Wei, S., et al.
(author)
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Reconstruction of genome-scale metabolic model of Yarrowia lipolytica and its application in overproduction of triacylglycerol
- 2017
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In: Bioresources and Bioprocessing. - : Springer. - 2197-4365. ; 4:1
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Journal article (peer-reviewed)abstract
- Background: Yarrowia lipolytica is widely studied as a non-conventional model yeast owing to the high level of lipid accumulation. Therein, triacylglycerol (TAG) is a major component of liposome. In order to investigate the TAG biosynthesis mechanism at a systematic level, a novel genome-scale metabolic model of Y. lipolytica was reconstructed based on a previous model iYL619_PCP published by our lab and another model iYali4 published by Kerkhoven et al. Results: The novel model iYL_2.0 contains 645 genes, 1083 metabolites, and 1471 reactions, which was validated more effective on simulations of specific growth rate. The precision of 29 carbon sources utilities reached up to 96.6% when simulated by iYL_2.0. In minimal growth medium, 111 genes were identified as essential for cell growth, whereas 66 essential genes were identified in yeast extract medium, which were verified by database of essential genes, suggesting a better prediction ability of iYL_2.0 in comparison with other existing models. In addition, potential metabolic engineering targets of improving TAG production were predicted by three in silico methods developed in-house, and the effects of amino acids supplementation were investigated based on model iYL_2.0. Conclusions: The reconstructed model iYL_2.0 is a powerful platform for efficiently optimizing the metabolism of TAG and systematically understanding the physiological mechanism of Y. lipolytica. [Figure not available: see fulltext.].
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