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1.	Abdullayev, I, et al. (author) A reference transcriptome and inferred proteome for the salamander Notophthalmus viridescens 2013 In: Experimental cell research. - : Elsevier BV. - 1090-2422 .- 0014-4827. ; 319:8, s. 1187-1197 Journal article (peer-reviewed)
2.	Elewa, A, et al. (author) Reading and editing the Pleurodeles waltl genome reveals novel features of tetrapod regeneration 2017 In: Nature communications. - : Springer Science and Business Media LLC. - 2041-1723. ; 8:1, s. 2286- Journal article (peer-reviewed)abstract Salamanders exhibit an extraordinary ability among vertebrates to regenerate complex body parts. However, scarce genomic resources have limited our understanding of regeneration in adult salamanders. Here, we present the ~20 Gb genome and transcriptome of the Iberian ribbed newt Pleurodeles waltl, a tractable species suitable for laboratory research. We find that embryonic stem cell-specific miRNAs mir-93b and mir-427/430/302, as well as Harbinger DNA transposons carrying the Myb-like proto-oncogene have expanded dramatically in the Pleurodeleswaltl genome and are co-expressed during limb regeneration. Moreover, we find that a family of salamander methyltransferases is expressed specifically in adult appendages. Using CRISPR/Cas9 technology to perturb transcription factors, we demonstrate that, unlike the axolotl, Pax3 is present and necessary for development and that contrary to mammals, muscle regeneration is normal without functional Pax7 gene. Our data provide a foundation for comparative genomic studies that generate models for the uneven distribution of regenerative capacities among vertebrates.
3.	Faridani, OR, et al. (author) Single-cell sequencing of the small-RNA transcriptome 2016 In: Nature biotechnology. - : Springer Science and Business Media LLC. - 1546-1696 .- 1087-0156. ; 34:12, s. 1264-1266 Journal article (peer-reviewed)
4.	Hagemann-Jensen, M, et al. (author) Small-seq for single-cell small-RNA sequencing 2018 In: Nature protocols. - : Springer Science and Business Media LLC. - 1750-2799 .- 1754-2189. ; 13:10, s. 2407-2424 Journal article (peer-reviewed)

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Type of publication: journal article (4)

Type of content: peer-reviewed (4)

Author/Editor: Abdullayev, I (4); Sandberg, R (4); Simon, A (2); Faridani, OR (2); Hagemann-Jensen, M (2); Wang, H. (1); show more...; Kumar, A. (1); Abbas, Y (1); Kirkham, M (1); Bjorklund, AK (1); Andersson, B. (1); Grabherr, Manfred (1); Lanner, F (1); Talavera-Lopez, C (1); Schell, JP (1); Penrad-Mobayed, M (1); Zamani, Neda (1); Joven, A (1); Elewa, A (1); Brito, G (1); Hameed, LS (1); Yao, ZY (1); show less...

University: Karolinska Institutet (4); Uppsala University (1)

Language: English (4)

Research subject (UKÄ/SCB): Medical and Health Sciences (2); Natural sciences (1)

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