| 1. |
- Beal, Jacob, et al.
(author)
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Robust estimation of bacterial cell count from optical density
- 2020
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In: Communications Biology. - : Springer Science and Business Media LLC. - 2399-3642. ; 3:1
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Journal article (peer-reviewed)abstract
- Optical density (OD) is widely used to estimate the density of cells in liquid culture, but cannot be compared between instruments without a standardized calibration protocol and is challenging to relate to actual cell count. We address this with an interlaboratory study comparing three simple, low-cost, and highly accessible OD calibration protocols across 244 laboratories, applied to eight strains of constitutive GFP-expressing E. coli. Based on our results, we recommend calibrating OD to estimated cell count using serial dilution of silica microspheres, which produces highly precise calibration (95.5% of residuals <1.2-fold), is easily assessed for quality control, also assesses instrument effective linear range, and can be combined with fluorescence calibration to obtain units of Molecules of Equivalent Fluorescein (MEFL) per cell, allowing direct comparison and data fusion with flow cytometry measurements: in our study, fluorescence per cell measurements showed only a 1.07-fold mean difference between plate reader and flow cytometry data.
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| 2. |
- Arheimer, Berit, et al.
(author)
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The IAHS Science for Solutions decade, with Hydrology Engaging Local People IN a Global world (HELPING)
- 2024
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In: Hydrological Sciences Journal. - 0262-6667 .- 2150-3435.
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Journal article (peer-reviewed)abstract
- The new scientific decade (2023-2032) of the International Association of Hydrological Sciences (IAHS) aims at searching for sustainable solutions to undesired water conditions - may it be too little, too much or too polluted. Many of the current issues originate from global change, while solutions to problems must embrace local understanding and context. The decade will explore the current water crises by searching for actionable knowledge within three themes: global and local interactions, sustainable solutions and innovative cross-cutting methods. We capitalise on previous IAHS Scientific Decades shaping a trilogy; from Hydrological Predictions (PUB) to Change and Interdisciplinarity (Panta Rhei) to Solutions (HELPING). The vision is to solve fundamental water-related environmental and societal problems by engaging with other disciplines and local stakeholders. The decade endorses mutual learning and co-creation to progress towards UN sustainable development goals. Hence, HELPING is a vehicle for putting science in action, driven by scientists working on local hydrology in coordination with local, regional, and global processes.
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| 3. |
- Meilia, P.D.I., et al.
(author)
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The PERFORM-P (Principles of Evidence-based Reporting in FORensic Medicine-Pathology version)
- 2021
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In: Forensic Science International. - : Elsevier. - 0379-0738 .- 1872-6283. ; 327
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Journal article (peer-reviewed)abstract
- Introduction: Most findings of forensic pathology examinations are presented as written reports. There are currently no internationally accepted recommendations for writing forensic pathology reports. Existing recommendations are also varied and reflect the differences in the scope and role of forensic medical services and local settings in which they are to be implemented. The legal fact-finder thus faces wide variation in the quality of forensic pathology reports, which poses a threat to the reliability of legal decision-making. To address this issue, the development of the “PERFORM-P (Principles of Evidence-based Reporting in FORensic Medicine-Pathology version)” was undertaken. The goal of the PERFORM-P is to provide common practice recommendations adaptable to local requirements to promote evidence-based practice (EBP) in forensic pathology. Methods: An international consensus study was conducted in three phases by (1) developing a long-list of items to be considered in the reporting recommendations, (2) conducting a Delphi process (an iterative survey method to transform individual opinions into group consensus) with international forensic pathologists, and (3) designing the PERFORM-P prototype and its accompanying manual. Results: With assistance from 106 forensic pathologists/forensic medical practitioners from 41 countries, the PERFORM-P was developed. The PERFORM-P consists of a list of 61 items to be included in a forensic pathology report, which is accompanied by its Explanation and Elaboration (E&E) document. Discussion: To prepare forensic pathology (postmortem) reports that incorporate principles of evidence-based practice, internationally accepted recommendations might be helpful. The PERFORM-P identifies recommendations for necessary elements to include in a forensic pathology report. PERFORM-P can be applied to a wide range of matters requiring forensic pathological analysis, acceptable to forensic pathologists from a representative selection of jurisdictions and medico-legal systems.
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| 4. |
- Viswanathan, V. P., et al.
(author)
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Ag/AgCl@MIL-88A(Fe) heterojunction ternary composites : Towards the photocatalytic degradation of organic pollutants
- 2021
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In: Dalton Transactions. - : Royal Society of Chemistry. - 1477-9226 .- 1477-9234. ; 50:8, s. 2891-2902
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Journal article (peer-reviewed)abstract
- The efficient utilization of solar energy has received tremendous interest due to the increasing environmental and energy concerns. The present paper discusses the efficient integration of a plasmonic photocatalyst (Ag/AgCl) with an iron-based metal-organic framework (MIL-88A(Fe)) for boosting the visible light photoreactivity of MIL-88A(Fe). Two composites of Ag/AgCl@MIL-88A(Fe), namelyMAG-1andMAG-2(stoichiometric ratio of Fe to Ag is 5:1 and 2:1), were successfully synthesizedviafacilein situhydrothermal methods followed by UV reduction. The synthesized composite materials are characterized by FTIR, PXRD, UVDRS, PL, FESEM/EDX, TEM and BET analyses. The Ag/AgCl@MIL-88A(Fe) (MAG-2) hybrid system shows excellent photocatalytic activity for the degradation ofp-nitrophenol (PNP), rhodamine B (RhB), and methylene blue (MB) under sunlight. We found that 91% degradation of PNP in 80 min, 99% degradation of RhB in 70 min and 94% degradation of MB in 70 min have taken place by usingMAG-2as a catalyst under sunlight. The superior activity of Ag/AgCl@MIL-88A(Fe) (MAG-2) is attributed to the synergistic effects from the surface plasmon resonance (SPR) of Ag NPs and the electron transfer from MIL-88A(Fe) to Ag nanoparticles for effective separation of electron-hole pairs. Furthermore, the mechanism of degradation of PNP, RhB and MB is proposed by analyzing the electron transfer pathway in Ag/AgCl@MIL-88A(Fe). © The Royal Society of Chemistry 2021.
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| 5. |
- Aiyelokun, Oluwatobi, et al.
(author)
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Credibility of design rainfall estimates for drainage infrastructures : extent of disregard in Nigeria and proposed framework for practice
- 2021
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In: Natural Hazards. - : Springer Science and Business Media LLC. - 0921-030X .- 1573-0840. ; 109:2, s. 1557-1588
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Journal article (peer-reviewed)abstract
- Rainfall intensity or depth estimates are vital input for hydrologic and hydraulic models used in designing drainage infrastructures. Unfortunately, these estimates are susceptible to different sources of uncertainties including climate change, which could have high implications on the cost and design of hydraulic structures. This study adopts a systematic literature review to ascertain the disregard of credibility assessment of rainfall estimates in Nigeria. Thereafter, a simple framework for informing the practice of reliability check of rainfall estimates was proposed using freely available open-source tools and applied to the north central region of Nigeria. The study revealed through a synthesis matrix that in the last decade, both empirical and theoretical methods have been applied in predicting design rainfall intensities or depths for different frequencies across Nigeria, but none of the selected studies assessed the credibility of the design estimates. This study has established through the application of the proposed framework that drainage infrastructure designed in the study area using 100–1000-year return periods are more susceptible to error. And that the extent of the credibility of quantitative estimates of extreme rains leading to flooding is not equal for each variability indicator across a large spatial region. Hence, to optimize informed decision-making regarding flood risk reduction by risk assessor, variability and uncertainty of rainfall estimates should be assessed spatially to minimize erroneous deductions.
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| 8. |
- Myadam, Rahul, et al.
(author)
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Risk of Adverse Outcomes Associated With Cardiac Sarcoidosis Diagnostic Schemes
- 2023
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In: JACC: Clinical Electrophysiology. - 2405-500X. ; 9:8, s. 1719-1729
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Journal article (peer-reviewed)abstract
- Background: Multiple cardiac sarcoidosis (CS) diagnostic schemes have been published. Objectives: This study aims to evaluate the association of different CS diagnostic schemes with adverse outcomes. The diagnostic schemes evaluated were 1993, 2006, and 2017 Japanese criteria and the 2014 Heart Rhythm Society criteria. Methods: Data were collected from the Cardiac Sarcoidosis Consortium, an international registry of CS patients. Outcome events were any of the following: all-cause mortality, left ventricular assist device placement, heart transplantation, and appropriate implantable cardioverter-defibrillator therapy. Logistic regression analysis evaluated the association of outcomes with each CS diagnostic scheme. Results: A total of 587 subjects met the following criteria: 1993 Japanese (n = 310, 52.8%), 2006 Japanese (n = 312, 53.2%), 2014 Heart Rhythm Society (n = 480, 81.8%), and 2017 Japanese (n = 112, 19.1%). Patients who met the 1993 criteria were more likely to experience an event than patients who did not (n = 109 of 310, 35.2% vs n = 59 of 277, 21.3%; OR: 2.00; 95% CI: 1.38-2.90; P < 0.001). Similarly, patients who met the 2006 criteria were more likely to have an event than patients who did not (n = 116 of 312, 37.2% vs n = 52 of 275, 18.9%; OR: 2.54; 95% CI: 1.74-3.71; P < 0.001). There was no statistically significant association between the occurrence of an event and whether a patient met the 2014 or the 2017 criteria (OR: 1.39; 95% CI: 0.85-2.27; P = 0.18 or OR: 1.51; 95% CI: 0.97-2.33; P = 0.067, respectively). Conclusions: CS patients who met the 1993 and the 2006 criteria had higher odds of adverse clinical outcomes. Future research is needed to prospectively evaluate existing diagnostic schemes and develop new risk models for this complex disease.
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