| 1. |
- Crone, Elizabeth E., et al.
(author)
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Ability of Matrix Models to Explain the Past and Predict the Future of Plant Populations
- 2013
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In: Conservation Biology. - : Wiley. - 0888-8892 .- 1523-1739. ; 27:5, s. 968-978
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Journal article (peer-reviewed)abstract
- Uncertainty associated with ecological forecasts has long been recognized, but forecast accuracy is rarely quantified. We evaluated how well data on 82 populations of 20 species of plants spanning 3 continents explained and predicted plant population dynamics. We parameterized stage-based matrix models with demographic data from individually marked plants and determined how well these models forecast population sizes observed at least 5 years into the future. Simple demographic models forecasted population dynamics poorly; only 40% of observed population sizes fell within our forecasts' 95% confidence limits. However, these models explained population dynamics during the years in which data were collected; observed changes in population size during the data-collection period were strongly positively correlated with population growth rate. Thus, these models are at least a sound way to quantify population status. Poor forecasts were not associated with the number of individual plants or years of data. We tested whether vital rates were density dependent and found both positive and negative density dependence. However, density dependence was not associated with forecast error. Forecast error was significantly associated with environmental differences between the data collection and forecast periods. To forecast population fates, more detailed models, such as those that project how environments are likely to change and how these changes will affect population dynamics, may be needed. Such detailed models are not always feasible. Thus, it may be wiser to make risk-averse decisions than to expect precise forecasts from models. Habilidad de los Modelos Matriciales para Explicar el Pasado y Predecir el Futuro de las Poblaciones de Plantas Resumen La incertidumbre asociada con el pronostico ecologico ha sido reconocida durante un largo tiempo pero rara vez se cuantifica su seguridad. Evaluamos que tan bien la informacion de 82 poblaciones de 20 especies de plantas a lo largo de 3 continentes explica y predice la dinamica de poblacion de las plantas. Realizamos parametros con modelos matriciales con base en estadios con datos demograficos a partir de plantas marcadas individualmente y determinamos que tan bien estos modelos pronostican el tamano de las poblaciones al menos 5 anos en el futuro. Los modelos demograficos simples pronosticaron pobremente las dinamicas de poblacion; solamente el 40% de las poblaciones observadas cayo dentro de los limites de confianza de 85% de nuestros pronosticos. Estos modelos sin embargo explicaron la dinamica de poblacion a lo largo de los anos en los que se colectaron datos; los cambios observados en el tamano de la poblacion durante el periodo de colecta de datos estuvieron positivamente correlacionados con la tasa de crecimiento de la poblacion. Asi, estos modelos son por lo menos una manera segura de cuantificar el estado de la poblacion. Los pronosticos debiles no estuvieron asociados con el numero de plantas individuales o con los anos de datos. Probamos si las tasas vitales dependian de la densidad y encontramos que existe dependencia hacia la densidad tanto positiva como negativa, sin embargo la dependencia de densidad no se asocio con el error de pronostico. El error de pronostico estuvo significativamente asociado con diferencias ambientales entre la recoleccion de datos y los periodos de pronostico. Para predecir el destino de las poblaciones se necesitan modelos mas detallados, como aquellos que proyectan los cambios probables en el ambiente y como estos cambios afectaran a la dinamica de las poblaciones. Tales modelos tan detallados no siempre son factibles. Por ello puede ser mejor tomar decisiones aversas a riesgos que esperar pronosticos precisos de los modelos.
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| 2. |
- Crone, Elizabeth E., et al.
(author)
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How do plant ecologists use matrix population models?
- 2011
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In: Ecology Letters. - : Wiley. - 1461-023X .- 1461-0248. ; 14:1, s. 1-8
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Journal article (peer-reviewed)abstract
- P>Matrix projection models are among the most widely used tools in plant ecology. However, the way in which plant ecologists use and interpret these models differs from the way in which they are presented in the broader academic literature. In contrast to calls from earlier reviews, most studies of plant populations are based on < 5 matrices and present simple metrics such as deterministic population growth rates. However, plant ecologists also cautioned against literal interpretation of model predictions. Although academic studies have emphasized testing quantitative model predictions, such forecasts are not the way in which plant ecologists find matrix models to be most useful. Improving forecasting ability would necessitate increased model complexity and longer studies. Therefore, in addition to longer term studies with better links to environmental drivers, priorities for research include critically evaluating relative/comparative uses of matrix models and asking how we can use many short-term studies to understand long-term population dynamics.
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| 3. |
- Ascencio, F, et al.
(author)
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Analysis of the interaction of Aeromonas caviae, A. hydrophila and A. sobria with mucins
- 1998
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In: FEMS Immunol Med Microbiol.. ; 20:3, s. 29-219
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Journal article (peer-reviewed)abstract
- Aeromonas species are known to be involved in human gastrointestinal diseases. These organisms colonize the gastrointestinal tract. Aeromonas hydrophila, A. caviae, and A. sobria have been demonstrated microscopically to adhere to animal cell lines that express mucous receptors, but quantitative studies of adherence to mucosal components such as mucin have not been published to date. Purified bovine submaxillary gland, hog gastric mucin, and fish skin mucin were used as a model to study mucin-binding activity among A. caviae, A. hydrophila, and A. sobria strains. Our findings revealed that binding of radiolabeled and enzyme-conjugated mucins to Aeromonas cells varied depending on the labeling procedure. The highest binding was observed when the three mucin preparations were labeled with horseradish peroxidase. Binding of the various horseradish peroxidase-labeled mucins by A. caviae, A. hydrophila, and A. sobria cells is a common property among Aeromonas species isolated from human infections, diseased fish, and from environmental sources. The proportion of Aeromonas strains which bind the various horseradish peroxidase-labeled mucins was significantly higher for A. hydrophila than for A. caviae and A. sobria. Bacterial cell-surface extracts containing active mucin-binding components recognized the horseradish peroxidase-labeled mucins. The molecular masses of the mucin-binding proteins were estimated by SDS-PAGE and Western blot as follows: A. caviae strain A4812 (95 and 44 kDa); A. hydrophila strain 48748 (97, 45, 33 and 22 kDa); and A. sobria strain 48739 (95 and 43 kDa). Mucin interaction with Aeromonas cells was also studied in terms of growth in mucin-rich media. The culture conditions greatly influence the expression of A. hydrophila mucin-binding activity.
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| 4. |
- Ascencio, F, et al.
(author)
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Cell-surface charge and cell-surface hydrophobicity of collagen-binding Aeromonas and Vibrio strains
- 1995
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In: Archives of Microbiology. - 0302-8933. ; 164:3, s. 223-230
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Journal article (peer-reviewed)abstract
- Abstract Partitioning in aqueous polymer two-phase systems of polyethylene glycol and dextran was used to detect and compare cell-surface charge and cell-surface hydrophobicity of Aeromonas hydrophila, A. caviae, A. sobria, Vibrio cholerae, and V. anguillarum strains. These strains have cell-surface components that bound either native or thermally denatured type I collagen (i.e., a mixture of the alpha1+alpha2 chains) and gelatin immobilized on latex beads. Our goals were: (1) to compare the possible relationship between the cell-surface charge/hydrophobicity and binding to collagen and (2) to evaluate the influence of the culture media on the expression of surface properties. There was no apparent relationship between cell-surface charge, cell-surface hydrophobicity, and binding to collagen. The expression of surface properties was dependent on the culture media. There was no relationship between binding to immobilized collagen and binding to soluble 125I-labeled collagen. Particle-agglutination reactivity differed when using various collagen-coated microbead preparations. There were general differences in the particle-agglutination reactivity when collagen-coated latex beads were prepared using different coating procedures. The negative charge and hydrophobicity of the various collagen-coated microbead preparations were also studied by partitioning in the two-phase system of polyethylene glycol and dextran. Under these conditions, the alpha1+alpha2 collagen-chain mixture covalently immobilized on carboxy-modified latex beads was less hydrophobic and negatively charged than gelatin and native collagen immobilized on the same kind of latex beads. For latex beads passively coated with collagen preparations, the alpha1+alpha2 collagen-chain mixture was more hydrophobic than gelatin and native collagen. We suggest that for screening collagen-binding among Vibrio and Aeromonas strains, a reliable and sensitive particle-agglutination assay should consider the collagen preparation and the coating procedure for the immobilization of collagen onto the latex beads. In this regard, carboxy-modified latex beads coated with an alpha1+alpha2 collagen-chain mixture gave the best results.
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| 5. |
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| 6. |
- Ascencio, F, et al.
(author)
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Production and secretion of collagen-binding proteins from Aeromonas veronii
- 2000
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In: Journal of Applied Microbiology. - : Oxford University Press (OUP). - 1364-5072 .- 1365-2672. ; 89:4, s. 607-616
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Journal article (peer-reviewed)abstract
- Collagen-binding protein (CNBP) synthesized by Aeromonas veronii is located conserved within the subcellular fraction. The results of this study show that 98% of the total CNBP produced by Aer. veronii is present in the extracellular medium, and that the remaining CNBP is distributed either on the cell surface, within the periplasm or anchored on the outer membrane. CNBP is specifically secreted from Aer. veronii into the culture medium, because all the -lactamase activity was located in the cells and could be released by polymixin B extraction of periplasmic proteins. CNBP was produced at growth temperatures from 12 °C to 42 °C, but not at 4 °C. The findings indicate that the level of CNBP in the medium increases during the exponential growth phase and reaches a maximum during the early stationary phase. There was less CNBP production in poor nutrient MMB medium than in the rich LB nutrient medium. CNBP secretion, in contrast to aerolysin secretion, was unaffected by the exeA mutation of Aer. hydrophila. It is concluded that CNBP secretion from Aer. veronii must be achieved by a mechanism different from that reported for aerolysin secretion.
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| 7. |
- Jones, Owen R., et al.
(author)
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Diversity of ageing across the tree of life
- 2014
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In: Nature. - : Springer Science and Business Media LLC. - 0028-0836 .- 1476-4687. ; 505:7482, s. 169-
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Journal article (peer-reviewed)abstract
- Evolution drives, and is driven by, demography. A genotype moulds its phenotype's age patterns of mortality and fertility in an environment; these two patterns in turn determine the genotype's fitness in that environment. Hence, to understand the evolution of ageing, age patterns of mortality and reproduction need to be compared for species across the tree of life. However, few studies have done so and only for a limited range of taxa. Here we contrast standardized patterns over age for 11 mammals, 12 other vertebrates, 10 invertebrates, 12 vascular plants and a green alga. Although it has been predicted that evolution should inevitably lead to increasing mortality and declining fertility with age after maturity, there is great variation among these species, including increasing, constant, decreasing, humped and bowed trajectories for both long-and short-lived species. This diversity challenges theoreticians to develop broader perspectives on the evolution of ageing and empiricists to study the demography of more species.
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| 8. |
- Ruiz-Bustos, E., et al.
(author)
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Isolation and characterisation of putative adhesins from Helicobacter pylori with affinity for heparan sulphate proteoglycan
- 2001
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In: Journal of Medical Microbiology. - 0022-2615. ; 50:3, s. 215-222
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Journal article (peer-reviewed)abstract
- A pool of heparan sulphate-binding proteins (HSBPs) from Helicobacter pylori culture supernates was obtained by sequential ammonium sulphate precipitation and affinity chromatography on heparin-Sepharose, The chromatographic procedure yielded one major fraction that contained proteins with heparan sulphate affinity as revealed by inhibition studies of heparan sulphate binding to H. pylori cells. Preparative iso-electric focusing, SDS-PACE and blotting experiments, with peroxidase(POD)-labelled heparan sulphate as a probe, indicated the presence of two major extracellular proteins with POD-heparan sulphate affinity. One protein had a molecular mass of 66.2 kDa and a pI of 5.4, whilst the second protein had a molecular mass of 71.5 kDa and a pI of 5.0. The N-terminal amino acid sequence of the 71.5-kDa HSBP did not show homology to any other heparin-binding protein, nor to known proteins of H, pylori, whereas the 66.2-kDa HSBP showed a high homology to an Escherichia coli chaperon protein and equine haemoglobin. A third HSBP was isolated from an outer-membrane protein (OMP) fraction of H. pylori cells with a molecular mass of 47.2 kDa, The amino acid sequence of an internal peptide of the OMP-HSBP did not show homology to the extracellular HSBP of H, pylori, or to another microbial HSBP.
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| 9. |
- Ruiz-Bustos, E., et al.
(author)
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Participation of cell-surface hydrophobins for hemin binding in Helicobacter pylori
- 2011
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In: Folia Microbiologica. - : Springer Science and Business Media LLC. - 1874-9356 .- 0015-5632. ; 56:3, s. 241-245
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Journal article (peer-reviewed)abstract
- Treatment of Helicobacter pylori cells with several chaotropic agents resulted in different degrees of inhibition in the binding of the bacteria to hemin and Congo-red dye. Polyanions also yielded a > 50% inhibitory effect. Furthermore, hydrophobic interaction chromatography was used to determine the relative surface hydrophobicity of cell-associated proteins extracted with 3 mol/L urea, revealing proteins with a significant hydrophobic profile.
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| 10. |
- Tye, Matthew R., et al.
(author)
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A demographic menage a trois : interactions between disturbances both amplify and dampen population dynamics of an endemic plant
- 2016
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In: Journal of Ecology. - : Wiley. - 0022-0477 .- 1365-2745. ; 104:6, s. 1778-1788
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Journal article (peer-reviewed)abstract
- Natural and anthropogenic disturbances co-occur in most systems, but how they interact to shape demographic outcomes remains poorly understood. Such interactions may alter dynamics of populations in non-additive ways, making demographic predictions challenging when focusing on only one disturbance. Thus, understanding the interactive effects of such disturbances is critically important to determine the population viability of most species under a diversity of stressors. We used a hierarchical integral projection model (IPM), parameterized with 13years of field data across 20 populations, encompassing 2435 individuals of an endangered herb, Liatris ohlingerae. We examined interactive effects of vertebrate herbivory, fire and anthropogenic activities (sand roads) on vital rates (e.g. survival, growth, reproduction, recruitment) and ultimately on population growth rates (), to test the hypothesis that interactions amplify or dampen differences in depending on environmental contexts. We constructed megamatrices to determine coupled dynamics in individuals damaged vs. not damaged by herbivores in roadsides and in Florida scrub with different times since fire. We identified strong interactive effects of fire with herbivory and habitat with herbivory on vital rates and on population growth rates in the IPM model. We also found different patterns of variation in between habitat and time-since-fire scenarios; population growth rates were higher in roadside populations compared to scrub populations and declined with increasing time since fire. Herbivory had interactive effects with both fire and human disturbances on . Herbivory resulted in decreased differences in due to anthropogenic disturbance and slightly increased differences in due to time since fire.Synthesis. The co-occurrence of various disturbances may both amplify and dampen the effects of other disturbances on population growth rate, thus shaping complex population dynamics that are neither linear nor additive. These realistic nonlinearities represent challenges in understanding and projecting of population dynamics. Here, we examined the effects of various sources of disturbance on the population dynamics of an endangered plant species, finding complex interactions affecting population growth rates. We argue that integration of multiple, interacting stressors in IPMs will allow more accurate estimation of the overall effects of ecological processes on species viability.
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