| 1. |
|
|
| 2. |
|
|
| 3. |
|
|
| 4. |
- Matt, C. E., et al.
(author)
-
Electron scattering, charge order, and pseudogap physics in La1.6-xNd0.4SrxCuO4 : An angle-resolved photoemission spectroscopy study
- 2015
-
In: Physical Review B. Condensed Matter and Materials Physics. - : American Physical Society. - 1098-0121 .- 1550-235X. ; 92:13
-
Journal article (peer-reviewed)abstract
- We report an angle-resolved photoemission study of the charge stripe ordered La1.6-xNd0.4SrxCuO4 (Nd-LSCO) system. A comparative and quantitative line-shape analysis is presented as the system evolves from the overdoped regime into the charge ordered phase. On the overdoped side (x = 0.20), a normal-state antinodal spectral gap opens upon cooling below 80 K. In this process, spectral weight is preserved but redistributed to larger energies. A correlation between this spectral gap and electron scattering is found. A different line shape is observed in the antinodal region of charge ordered Nd-LSCO x = 1/8. Significant low-energy spectral weight appears to be lost. These observations are discussed in terms of spectral-weight redistribution and gapping originating from charge stripe ordering.
|
|
| 5. |
- Arnlund, David, et al.
(author)
-
Visualizing a protein quake with time-resolved X-ray scattering at a free-electron laser
- 2014
-
In: Nature Methods. - : Springer Science and Business Media LLC. - 1548-7091 .- 1548-7105. ; 11:9, s. 923-926
-
Journal article (peer-reviewed)abstract
- We describe a method to measure ultrafast protein structural changes using time-resolved wide-angle X-ray scattering at an X-ray free-electron laser. We demonstrated this approach using multiphoton excitation of the Blastochloris viridis photosynthetic reaction center, observing an ultrafast global conformational change that arises within picoseconds and precedes the propagation of heat through the protein. This provides direct structural evidence for a 'protein quake': the hypothesis that proteins rapidly dissipate energy through quake-like structural motions.
|
|
| 6. |
- Edlund, Petra, et al.
(author)
-
The room temperature crystal structure of a bacterial phytochrome determined by serial femtosecond crystallography
- 2016
-
In: Scientific Reports. - : Springer Science and Business Media LLC. - 2045-2322. ; 6
-
Journal article (peer-reviewed)abstract
- Phytochromes are a family of photoreceptors that control light responses of plants, fungi and bacteria. A sequence of structural changes, which is not yet fully understood, leads to activation of an output domain. Time-resolved serial femtosecond crystallography (SFX) can potentially shine light on these conformational changes. Here we report the room temperature crystal structure of the chromophore-binding domains of the Deinococcus radiodurans phytochrome at 2.1 angstrom resolution. The structure was obtained by serial femtosecond X-ray crystallography from microcrystals at an X-ray free electron laser. We find overall good agreement compared to a crystal structure at 1.35 angstrom resolution derived from conventional crystallography at cryogenic temperatures, which we also report here. The thioether linkage between chromophore and protein is subject to positional ambiguity at the synchrotron, but is fully resolved with SFX. The study paves the way for time-resolved structural investigations of the phytochrome photocycle with time-resolved SFX.
|
|
| 7. |
|
|
| 8. |
- Nogly, P., et al.
(author)
-
Lipidic cubic phase injector is a viable crystal delivery system for time-resolved serial crystallography
- 2016
-
In: Nature Communications. - : Springer Science and Business Media LLC. - 2041-1723. ; 7
-
Journal article (peer-reviewed)abstract
- Serial femtosecond crystallography (SFX) using X-ray free-electron laser sources is an emerging method with considerable potential for time-resolved pump-probe experiments. Here we present a lipidic cubic phase SFX structure of the light-driven proton pump bacteriorhodopsin (bR) to 2.3 angstrom resolution and a method to investigate protein dynamics with modest sample requirement. Time-resolved SFX (TR-SFX) with a pump-probe delay of 1ms yields difference Fourier maps compatible with the dark to M state transition of bR. Importantly, the method is very sample efficient and reduces sample consumption to about 1mg per collected time point. Accumulation of M intermediate within the crystal lattice is confirmed by time-resolved visible absorption spectroscopy. This study provides an important step towards characterizing the complete photocycle dynamics of retinal proteins and demonstrates the feasibility of a sample efficient viscous medium jet for TR-SFX.
|
|
| 9. |
- Pedersen, C. A., et al.
(author)
-
In situ observations of black carbon in snow and the corresponding spectral surface albedo reduction
- 2015
-
In: Journal of Geophysical Research - Atmospheres. - 2169-897X .- 2169-8996. ; 120:4, s. 1476-1489
-
Journal article (peer-reviewed)abstract
- Black carbon (BC) particles emitted from incomplete combustion of fossil fuel and biomass and deposited on snow and ice darken the surface and reduce the surface albedo. Even small initial surface albedo reductions may have larger adjusted effects due to snow morphology changes and changes in the sublimation and snow melt rate. Most of the literature on the effect of BC on snow surface albedo is based on numerical models, and few in situ field measurements exist to confirm this reduction. Here we present an extensive set of concurrent in situ measurements of spectral surface albedo, BC concentrations in the upper 5 cm of the snowpack, snow physical parameters (grain size and depth), and incident solar flux characteristics from the Arctic. From this data set (with median BC concentrations ranging from 5 to 137 ng BC per gram of snow) we are able to separate the BC signature on the snow albedo from the natural snow variability. Our measurements show a significant correlation between BC in snow and spectral surface albedo. Based on these measurements, parameterizations are provided, relating the snow albedo, as a function of wavelength, to the equivalent BC content in the snowpack. The term equivalent BC used here is the elemental carbon concentration inferred from the thermo-optical method adjusted for the fraction of non-BC constituents absorbing sunlight in the snow. The first parameterization is a simple equation which efficiently describes the snow albedo reduction due to the equivalent BC without including details on the snow or BC microphysics. This can be used in models when a simplified description is needed. A second parameterization, including snow grain size information, shows enhanced correspondence with the measurements. The extracted parameterizations are valid for wavelength bands 400-900 nm, constrained for BC concentrations between 1 and 400 ng g(-1), and for an optically thick snowpack. The parameterizations are purely empirical, and particular focus was on the uncertainties associated with the measurements, and how these uncertainties propagate in the parameterizations. Integrated, the first parameterization (based only on the equivalent BC) gives a broadband (400-900 nm) snow albedo reduction of 0.004 due to 10 ng equivalent BC per gram of snow, while the effect is almost 5 times larger for BC concentrations 1 order of magnitude higher. The study shows that the reconstructed albedo from the second parameterization (including information on the snow grain size) corresponds better to the radiative transfer model Snow, Ice, and Aerosol Radiation albedo than the reconstructed albedo from the first parameterization (excluding grain size information).
|
|
| 10. |
- Western, Benedikte, et al.
(author)
-
Dropout from exercise trials among cancer survivors—An individual patient data meta-analysis from the POLARIS study
- 2024
-
In: Scandinavian Journal of Medicine and Science in Sports. - Chichester, West Sussex : Wiley-Blackwell Publishing Inc.. - 0905-7188 .- 1600-0838. ; 34:2, s. 1-10
-
Journal article (peer-reviewed)abstract
- Introduction: The number of randomized controlled trials (RCTs) investigating the effects of exercise among cancer survivors has increased in recent years; however, participants dropping out of the trials are rarely described. The objective of the present study was to assess which combinations of participant and exercise program characteristics were associated with dropout from the exercise arms of RCTs among cancer survivors. Methods: This study used data collected in the Predicting OptimaL cAncer RehabIlitation and Supportive care (POLARIS) study, an international database of RCTs investigating the effects of exercise among cancer survivors. Thirty-four exercise trials, with a total of 2467 patients without metastatic disease randomized to an exercise arm were included. Harmonized studies included a pre and a posttest, and participants were classified as dropouts when missing all assessments at the post-intervention test. Subgroups were identified with a conditional inference tree. Results: Overall, 9.6% of the participants dropped out. Five subgroups were identified in the conditional inference tree based on four significant associations with dropout. Most dropout was observed for participants with BMI >28.4 kg/m2, performing supervised resistance or unsupervised mixed exercise (19.8% dropout) or had low-medium education and performed aerobic or supervised mixed exercise (13.5%). The lowest dropout was found for participants with BMI >28.4 kg/m2 and high education performing aerobic or supervised mixed exercise (5.1%), and participants with BMI ≤28.4 kg/m2 exercising during (5.2%) or post (9.5%) treatment. Conclusions: There are several systematic differences between cancer survivors completing and dropping out from exercise trials, possibly affecting the external validity of exercise effects. © 2024 The Authors. Scandinavian Journal of Medicine & Science In Sports published by John Wiley & Sons Ltd.
|
|
