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Träfflista för sökning "WFRF:(Bracken P.) "

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  • Result 1-9 of 9
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  • Buckley, Jeffrey, 1992-, et al. (author)
  • An assessment of the transparency of contemporary technology education research employing interview-based methodologies
  • 2021
  • In: International journal of technology and design education. - : Springer Nature. - 0957-7572 .- 1573-1804.
  • Journal article (peer-reviewed)abstract
    • A high level of transparency in reported research is critical for several reasons, such as ensuring an acceptable level of trustworthiness and enabling replication. Transparency in qualitative research permits the identification of specific circumstances which are associated with findings and observations. Thus, transparency is important for the repeatability of original studies and for explorations of the transferability of original findings. There has been no investigation into levels of transparency in reported technology education research to date. With a position that increasing transparency would be beneficial, this article presents an analysis of levels of transparency in contemporary technology education research studies which employed interviews within their methodologies, and which were published within the International Journal of Technology and Design Education and Design and Technology Education: An International Journal (n = 38). The results indicate room for improvement, especially in terms of documenting researcher positionality, determinations of data saturation, and how power imbalances were managed. A discussion is presented on why it is important to improve levels of transparency in reported studies, and a guide on areas to make transparent is presented for qualitative and quantitative research.
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  • Riddell, M. C., et al. (author)
  • The competitive athlete with type 1 diabetes
  • 2020
  • In: Diabetologia. - : Springer Science and Business Media LLC. - 0012-186X .- 1432-0428. ; 63, s. 1475-1490
  • Journal article (peer-reviewed)abstract
    • Regular exercise is important for health, fitness and longevity in people living with type 1 diabetes, and many individuals seek to train and compete while living with the condition. Muscle, liver and glycogen metabolism can be normal in athletes with diabetes with good overall glucose management, and exercise performance can be facilitated by modifications to insulin dose and nutrition. However, maintaining normal glucose levels during training, travel and competition can be a major challenge for athletes living with type 1 diabetes. Some athletes have low-to-moderate levels of carbohydrate intake during training and rest days but tend to benefit, from both a glucose and performance perspective, from high rates of carbohydrate feeding during long-distance events. This review highlights the unique metabolic responses to various types of exercise in athletes living with type 1 diabetes.
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  • Austin, Åsa, 1988- (author)
  • Aquatic vegetation in coastal ecosystems : The role of biotic interactions and environmental change for ecosystem functions and resilience in the Baltic Sea
  • 2021
  • Doctoral thesis (other academic/artistic)abstract
    • Coastal ecosystems are among the most productive on Earth but subjected to many human pressures. In shallow coastal areas, aquatic vegetation constitutes foundation species that sustain secondary production and act as a nutrient filter, which may buffer human impacts. But little is known about how anthropogenic factors alter biotic interactions in aquatic vegetation, and how these changes affect ecosystem functions and resilience.The aim of this thesis was to investigate how natural and anthropogenic factors alter aquatic vegetation communities and biotic interactions, and how these in turn affect ecosystem functions and resilience to common stressors. Shallow coastal bays in the Baltic Sea were used as model system. A large field survey was conducted to investigate effects of natural and anthropogenic gradients, including bay topographic openness and nutrient runoff, on vegetation communities and ecosystem functions. Results suggest that high vegetation cover can improve water clarity, whereas sediment-driven turbidity can negatively affect vegetation by decreasing the light penetration of the water (Paper I). This dual relationship indicates the potential for two alternative, self-sustaining states in shallow bays; with or without vegetation.Using data from the same survey I investigated the influence of species richness and cover of rooted aquatic vegetation and drift wrack (Fucus vesiculosus), for ecosystem multifunctionality (MF) (Paper II). MF was estimated as the mean of four variables used as proxies for key functions; large predatory fish recruitment, grazer biomass, inverted ‘nuisance’ algal biomass and water clarity. MF was highest when the two functionally different vegetation types (rooted and drifting) co-occurred at high covers, and high species richness increased multifunctionality by increasing rooted vegetation cover.To understand in greater detail if and how interactions within and between vegetation species mediate the effects of environmental change, I conducted two experiments. First, a cage experiment to test if intraspecific plant facilitation may buffer effects of altered top-down and bottom-up control (Paper III), then a mesocosm experiment to test if shading alters interspecific interactions between three common plant species (Paper IV). The cage experiment showed that high shoot density of a common plant (Myriophyllum spicatum) increased individual shoot performance, but only when subjected to both fertilization and large predatory fish exclusion (Paper III). The mesocosm experiment showed that individual species’ traits had stronger effect than shading on interspecific competition and community yield (Paper IV).In conclusion, my thesis shows that single and multiple ecosystem functions benefit from high vegetation cover, with direct and indirect effects of diversity, but are sensitive to anthropogenic stressors (Papers I, II). Further, shading alters biotic interactions among vegetation species in a eutrophic coastal ecosystem by increasing the competitive advantage of dominant species (Paper IV), while intraspecific facilitation increases resilience to interacting stressors (Paper III). Together, the results highlight the need for ecosystem-based management where efforts to reduce anthropogenic influence (e.g. by nutrient reduction and fishing restrictions) are combined with improved protection and restoration of the ecologically and economically valuable aquatic vegetation communities.
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  • Lanigan, Fiona, et al. (author)
  • Delineating Transcriptional Networks of Prognostic Gene Signatures Refines Treatment Recommendations for Lymph Node-negative Breast Cancer Patients.
  • 2015
  • In: The FEBS Journal. - : Wiley. - 1742-464X. ; 282:18, s. 3455-3473
  • Journal article (peer-reviewed)abstract
    • The majority of women diagnosed with lymph node-negative breast cancer are unnecessarily treated with damaging chemotherapeutics following surgical resection. This highlights the importance of understanding and more accurately predicting patient prognosis. Here, we define the transcriptional networks regulating well-established prognostic gene expression signatures. We find that the same set of transcriptional regulators consistently lie upstream of both 'prognosis' and 'proliferation' gene signatures, suggesting that a central transcriptional network underpins a shared phenotype within these signatures. Strikingly, the master transcriptional regulators within this network predict recurrence risk for lymph node-negative breast cancer better than currently used multi-gene prognostic assays, particularly in lymph node-negative, estrogen receptor-positive patients. Simultaneous examination of p16(INK) (4A ) expression, which predicts tumors that have bypassed cellular senescence, revealed that intermediate levels of p16(INK) (4A) correlate with an intact pRB pathway and improved survival. A combination of these master transcriptional regulators and p16(INK) (4A) , termed the OncoMasTR score, stratifies tumours based on their proliferative and senescence capacity, facilitating a clearer delineation of lymph node-negative breast cancer patients at high risk of recurrence, and thus requiring chemotherapy. Furthermore, OncoMasTR accurately classifies over 60% of patients as 'low risk', an improvement on existing prognostic assays, which has the potential to reduce overtreatment in early-stage patients. Taken together, this study provides new insights into the transcriptional regulation of cellular proliferation in breast cancer and provides an opportunity to enhance and streamline breast cancer prognosis. This article is protected by copyright. All rights reserved.
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  • Loughman, Tony, et al. (author)
  • Analytical Validation of a Novel 6-Gene Signature for Prediction of Distant Recurrence in Estrogen Receptor-Positive, HER2-Negative, Early-Stage Breast Cancer
  • 2022
  • In: Clinical Chemistry. - : Oxford University Press (OUP). - 0009-9147 .- 1530-8561. ; 68:6, s. 837-847
  • Journal article (peer-reviewed)abstract
    • BackgroundOncoMasTR is a recently developed multigene prognostic test for early-stage breast cancer. The test has been developed in a kit-based format for decentralized deployment in molecular pathology laboratories. The analytical performance characteristics of the OncoMasTR test are described in this study.MethodsExpression levels of 6 genes were measured by 1-step reverse transcription-quantitative PCR on RNA samples prepared from formalin-fixed, paraffin-embedded (FFPE) breast tumor specimens. Assay precision, reproducibility, input range, and interference were determined using FFPE-derived RNA samples representative of low and high prognostic risk scores. A pooled RNA sample derived from 6 FFPE breast tumor specimens was used to establish the linear range, limit of detection, and amplification efficiency of the individual gene expression assays.ResultsThe overall precision of the OncoMasTR test was high with an SD of 0.16, which represents less than 2% of the 10-unit risk score range. Test results were reproducible across 4 testing sites, with correlation coefficients of 0.94 to 0.96 for the continuous risk score and concordance of 86% to 96% in low-/high-risk sample classification. Consistent risk scores were obtained across a > 100-fold RNA input range. Individual gene expression assays were linear up to quantification cycle values of 36.0 to 36.9, with amplification efficiencies of 80% to 102%. Test results were not influenced by agents used during RNA isolation, by low levels of copurified genomic DNA, or by moderate levels of copurified adjacent nontumor tissue.ConclusionThe OncoMasTR prognostic test displays robust analytical performance that is suitable for deployment by local pathology laboratories for decentralized use.
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  • Loughman, T., et al. (author)
  • Analytical validation of OncoMasTR, a multigene test for predicting risk of distant recurrence in hormone receptor-positive early stage breast cancer
  • 2018
  • In: Annals of oncology : official journal of the European Society for Medical Oncology. - : Elsevier BV. - 1569-8041. ; 29:Suppl. 8, s. 65-65
  • Conference paper (other academic/artistic)abstract
    • Background: OncoMasTR is a new multigene prognostic test that was discovered via a novel transcriptional network analysis method that identified upstream Master Transcription Regulators (MTRs), which regulate previously identified prognostic biomarkers. The optimised OncoMasTR signature incorporating clinicopathological information has been shown to be significantly prognostic for predicting distant recurrence in two independent cohorts (TransATAC & a subset of TAILORx from participating Irish centres). The analytical performance characteristics of the OncoMasTR test, comprising solely three prognostic MTRs, were determined. Methods: Relative gene expression levels were measured by RT-qPCR. Assay precision and input ranges were determined using a panel of samples representative of low and high recurrence risk tested across a number of runs incorporating different sources of variation. Serial dilutions of a pooled patient RNA sample was used to establish the linear range and efficiency of the individual gene assays. Results: The overall standard deviation of the OncoMasTR risk score was 0.15, which represents less than 2% of the 10-unit risk score range. The majority of the variability in OncoMasTR results was related to within-run variation (78.2%) with other between-run variation sources contributing relatively little (PCR instrument (0.6%), assay operator (5.2%), reagent lots (7.3%) or loading position (8.7%)). Consistent risk scores were measured for individual samples from 40ng down to < 1ng RNA per PCR reaction. Individual gene assays were linear over >500-fold RNA input range corresponding to CT values of 23 – 36, demonstrating the ability of the test to reliably detect low level expression of the OncoMasTR panel. Importantly, PCR efficiencies were similar for the individual MTR and reference gene assays which ranged from 79 – 95%. Conclusions: The OncoMasTR prognostic test displays robust analytical and clinical performance and is being launched as a CE-marked test. The concise nature of the three gene signature and a simplified workflow that can be readily adopted using standard laboratory equipment will enable convenient qualification by local laboratories for decentralised use.
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  • Result 1-9 of 9

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