| 1. |
- Beck, P S A, et al.
(author)
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A ground-validated NDVI dataset for monitoring vegetation dynamics and mapping phenology in Fennoscandia and the Kola peninsula
- 2007
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In: International Journal of Remote Sensing. - : Informa UK Limited. - 1366-5901 .- 0143-1161. ; 28:19, s. 4311-4330
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Journal article (peer-reviewed)abstract
- An NDVI dataset covering Fennoscandia and the Kola peninsula was created for vegetation and climate studies, using Moderate Resolution Imaging Spectroradiometer 16-day maximum value composite data from 2000 to 2005. To create the dataset, ( 1) the influence of the polar night and snow on the NDVI values was removed by replacing NDVI values in winter with a pixel- specific NDVI value representing the NDVI outside the growing season when the pixel is free of snow; and ( 2) yearly NDVI time series were modelled for each pixel using a double logistic function defined by six parameters. Estimates of the onset of spring and the end of autumn were then mapped using the modelled dataset and compared with ground observations of the onset of leafing and the end of leaf fall in birch, respectively. Missing and poor-quality data prevented estimates from being produced for all pixels in the study area. Applying a 5 km x 5 km mean filter increased the number of modelled pixels without decreasing the accuracy of the predictions. The comparison shows good agreement between the modelled and observed dates ( root mean square error = 12 days, n = 108 for spring; root mean square error = 10 days, n = 26, for autumn). Fennoscandia shows a range in the onset of spring of more than 2 months within a single year and locally the onset of spring varies with up to one month between years. The end of autumn varies by one and a half months across the region. While continued validation with ground data is needed, this new dataset facilitates the detailed monitoring of vegetation activity in Fennoscandia and the Kola peninsula.
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| 2. |
- Porcar-Castell, A., et al.
(author)
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EUROSPEC: at the interface between remote-sensing and ecosystem CO2 flux measurements in Europe
- 2015
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In: Biogeosciences. - : Copernicus GmbH. - 1726-4189. ; 12:20, s. 6103-6124
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Research review (peer-reviewed)abstract
- Resolving the spatial and temporal dynamics of gross primary productivity (GPP) of terrestrial ecosystems across different scales remains a challenge. Remote sensing is regarded as the solution to upscale point observations conducted at the ecosystem level, using the eddy covariance (EC) technique, to the landscape and global levels. In addition to traditional vegetation indices, the photochemical reflectance index (PRI) and the emission of solar-induced chlorophyll fluorescence (SIF), now measurable from space, provide a new range of opportunities to monitor the global carbon cycle using remote sensing. However, the scale mismatch between EC observations and the much coarser satellite-derived data complicates the integration of the two sources of data. The solution is to establish a network of in situ spectral measurements that can act as bridge between EC measurements and remote sensing data. In situ spectral measurements have been already conducted for many years at EC sites, but using variable instrumentation, setups, and measurement standards. In Europe in particular, in situ spectral measurements remain highly heterogeneous. The goal of EUROSPEC Cost Action ES0930 was to promote the development of common measuring protocols and new instruments towards establishing best practices and standardization of in situ spectral measurements. In this review we describe the background and main tradeoffs of in situ spectral measurements, review the main results of EUROSPEC Cost Action, and discuss the future challenges and opportunities of in situ spectral measurements for improved estimation of local and global carbon cycle.
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| 3. |
- Rhedin, S. A., et al.
(author)
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Protocol Introducing a New Algorithm for Classification of Etiology in Studies on Pediatric Pneumonia: Protocol for the Trial of Respiratory Infections in Children for Enhanced Diagnostics Study
- 2019
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In: Journal of Medical Internet Research. - : JMIR Publications Inc.. - 1438-8871. ; 21:4
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Journal article (peer-reviewed)abstract
- Background: There is a need to better distinguish viral infections from antibiotic-requiring bacterial infections in children presenting with clinical community-acquired pneumonia (CAP) to assist health care workers in decision making and to improve the rational use of antibiotics. Objective: The overall aim of the Trial of Respiratory infections in children for ENhanced Diagnostics (TREND) study is to improve the differential diagnosis of bacterial and viral etiologies in children aged below 5 years with clinical CAP, by evaluating myxovirus resistance protein A (MxA) as a biomarker for viral CAP and by evaluating an existing (multianalyte point-of-care antigen detection test system [mariPOC respi] ArcDia International Oy Ltd.) and a potential future point-of-care test for respiratory pathogens. Methods: Children aged 1 to 59 months with clinical CAP as well as healthy, hospital-based, asymptomatic controls will be included at a pediatric emergency hospital in Stockholm, Sweden. Blood (analyzed for MxA and C-reactive protein) and nasopharyngeal samples (analyzed with real-time polymerase chain reaction as the gold standard and antigen-based mariPOC respi test as well as saved for future analyses of a novel recombinase polymerase amplification-based point-of-care test for respiratory pathogens) will be collected. A newly developed algorithm for the classification of CAP etiology will be used as the reference standard. Results: A pilot study was performed from June to August 2017. The enrollment of study subjects started in November 2017. Results are expected by the end of 2019.Conclusions: The findings from the TREND study can be an important step to improve the management of children with clinical. © 2019 Journal of Medical Internet Research. All rights reserved.
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| 4. |
- Sjöström, Martin, et al.
(author)
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Evaluation of satellite based indices for gross primary production estimates in a sparse savanna in the Sudan
- 2009
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In: Biogeosciences. - : Copernicus GmbH. - 1726-4189. ; 6:1, s. 129-138
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Journal article (peer-reviewed)abstract
- One of the more frequently applied methods for integrating controls on primary production through satellite data is the Light Use Efficiency (LUE) approach. Satellite indices such as the Normalized Difference Vegetation Index (NDVI), Enhanced Vegetation Index (EVI) and the Shortwave Infrared Water Stress Index (SIWSI) have previously shown promise as predictors of primary production in several different environments. In this study, we evaluate NDVI, EVI and SIWSI derived from the Moderate Resolution Imaging Spectroradiometer (MODIS) satellite sensor against in-situ measurements from central Sudan in order to asses their applicability in LUE-based primary production modeling within a water limited environment. Results show a strong correlation between vegetation indices and gross primary production (GPP), demonstrating the significance of vegetation indices for deriving information on primary production with relatively high accuracy at similar areas. Evaluation of SIWSI however, reveal that the fraction of vegetation apparently is to low for the index to provide accurate information on canopy water content, indicating that the use of SIWSI as a predictor of water stress in satellite data-driven primary production modeling in similar semi-arid ecosystems is limited.
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| 5. |
- Vicente-Serrano, S. M., et al.
(author)
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The complex multi-sectoral impacts of drought : Evidence from a mountainous basin in the Central Spanish Pyrenees
- 2021
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In: Science of the Total Environment. - : Elsevier BV. - 0048-9697. ; 769
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Journal article (peer-reviewed)abstract
- We analyzed the impacts of drought severity on a variety of sectors in a topographically complex basin (the upper Aragón basin 2181 km2) in the Central Spanish Pyrenees. Using diverse data sources including meteorological and hydrological observations, remote sensing and tree rings, we analyze the possible hydrological implications of drought occurrence and severity on water availability in various sectors, including downstream impacts on irrigation water supply for crop production. Results suggest varying responses in forest activity, secondary growth, plant phenology, and crop yield to drought impacts. Specifically, meteorological droughts have distinct impacts downstream, mainly due to water partitioning between streamflow and irrigation channels that transport water to crop producing areas. This implies that drought severity can extend beyond the physical boundaries of the basin, with impacts on crop productivity. This complex response to drought impacts makes it difficult to develop objective basin-scale operational definitions for monitoring drought severity. Moreover, given the high spatial variability in responses to drought across sectors, it is difficult to establish reliable drought thresholds from indices that are relevant across all socio-economic sectors. The anthropogenic impacts (e.g. water regulation projects, ecosystem services, land cover and land use changes) pose further challenges to assessing the response of different systems to drought severity. This study stresses the need to consider the seasonality of drought impacts and appropriate drought time scales to adequately assess and understand their complexity.
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| 6. |
- Abdi, A. M., et al.
(author)
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First assessment of the plant phenology index (PPI) for estimating gross primary productivity in African semi-arid ecosystems
- 2019
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In: International Journal of Applied Earth Observation and Geoinformation. - : Elsevier BV. - 1569-8432. ; 78, s. 249-260
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Journal article (peer-reviewed)abstract
- The importance of semi-arid ecosystems in the global carbon cycle as sinks for CO 2 emissions has recently been highlighted. Africa is a carbon sink and nearly half its area comprises arid and semi-arid ecosystems. However, there are uncertainties regarding CO 2 fluxes for semi-arid ecosystems in Africa, particularly savannas and dry tropical woodlands. In order to improve on existing remote-sensing based methods for estimating carbon uptake across semi-arid Africa we applied and tested the recently developed plant phenology index (PPI). We developed a PPI-based model estimating gross primary productivity (GPP) that accounts for canopy water stress, and compared it against three other Earth observation-based GPP models: the temperature and greenness (T-G) model, the greenness and radiation (GöR) model and a light use efficiency model (MOD17). The models were evaluated against in situ data from four semi-arid sites in Africa with varying tree canopy cover (3–65%). Evaluation results from the four GPP models showed reasonable agreement with in situ GPP measured from eddy covariance flux towers (EC GPP) based on coefficient of variation (R 2 ), root-mean-square error (RMSE), and Bayesian information criterion (BIC). The GöR model produced R 2 = 0.73, RMSE = 1.45 g C m −2 d −1 , and BIC = 678; the T-G model produced R 2 = 0.68, RMSE = 1.57 g C m −2 d −1 , and BIC = 707; the MOD17 model produced R 2 = 0.49, RMSE = 1.98 g C m −2 d −1 , and BIC = 800. The PPI-based GPP model was able to capture the magnitude of EC GPP better than the other tested models (R 2 = 0.77, RMSE = 1.32 g C m −2 d −1 , and BIC = 631). These results show that a PPI-based GPP model is a promising tool for the estimation of GPP in the semi-arid ecosystems of Africa.
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| 7. |
- Balzarolo, Manuela, et al.
(author)
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Ground-Based Optical Measurements at European Flux Sites: A Review of Methods, Instruments and Current Controversies
- 2011
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In: Sensors. - : MDPI AG. - 1424-8220. ; 11:8, s. 7954-7981
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Research review (peer-reviewed)abstract
- This paper reviews the currently available optical sensors, their limitations and opportunities for deployment at Eddy Covariance (EC) sites in Europe. This review is based on the results obtained from an online survey designed and disseminated by the Co-cooperation in Science and Technology (COST) Action ESO903-"Spectral Sampling Tools for Vegetation Biophysical Parameters and Flux Measurements in Europe" that provided a complete view on spectral sampling activities carried out within the different research teams in European countries. The results have highlighted that a wide variety of optical sensors are in use at flux sites across Europe, and responses further demonstrated that users were not always fully aware of the key issues underpinning repeatability and the reproducibility of their spectral measurements. The key findings of this survey point towards the need for greater awareness of the need for standardisation and development of a common protocol of optical sampling at the European EC sites.
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| 8. |
- Bolton, Douglas K., et al.
(author)
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Continental-scale land surface phenology from harmonized Landsat 8 and Sentinel-2 imagery
- 2020
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In: Remote Sensing of Environment. - : Elsevier BV. - 0034-4257. ; 240
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Journal article (peer-reviewed)abstract
- Dense time series of Landsat 8 and Sentinel-2 imagery are creating exciting new opportunities to monitor, map, and characterize temporal dynamics in land surface properties with unprecedented spatial detail and quality. By combining imagery from the Landsat 8 Operational Land Imager and the MultiSpectral Instrument on-board Sentinel-2A and -2B, the remote sensing community now has access to moderate (10–30 m) spatial resolution imagery with repeat periods of ~3 days in the mid-latitudes. At the same time, the large combined data volume from Landsat 8 and Sentinel-2 introduce substantial new challenges for users. Land surface phenology (LSP) algorithms, which estimate the timing of phenophase transitions and quantify the nature and magnitude of seasonality in remotely sensed land surface conditions, provide an intuitive way to reduce data volumes and redundancy, while also furnishing data sets that are useful for a wide range of applications including monitoring ecosystem response to climate variability and extreme events, ecosystem modelling, crop-type discrimination, and land cover, land use, and land cover change mapping, among others. To support the need for operational LSP data sets, here we describe a continental-scale land surface phenology algorithm and data product based on harmonized Landsat 8 and Sentinel-2 (HLS) imagery. The algorithm creates high quality times series of vegetation indices from HLS imagery, which are then used to estimate the timing of vegetation phenophase transitions at 30 m spatial resolution. We present results from assessment efforts evaluating LSP retrievals, and provide examples illustrating the character and quality of information related to land cover and terrestrial ecosystem properties provided by the continental LSP dataset that we have developed. The algorithm is highly successful in ecosystems with strong seasonal variation in leaf area (e.g., deciduous forests). Conversely, results in evergreen systems are less interpretable and conclusive.
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| 9. |
- Eklundh, A., et al.
(author)
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Etiology of Clinical Community-Acquired Pneumonia in Swedish Children Aged 1-59 Months with High Pneumococcal Vaccine Coverage-The TREND Study
- 2021
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In: Vaccines. - : MDPI AG. - 2076-393X. ; 9:4
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Journal article (peer-reviewed)abstract
- (1) Immunization with pneumococcal conjugate vaccines has decreased the burden of community-acquired pneumonia (CAP) in children and likely led to a shift in CAP etiology. (2) The Trial of Respiratory infections in children for ENhanced Diagnostics (TREND) enrolled children 1-59 months with clinical CAP according to the World Health Organization (WHO) criteria at Sachs' Children and Youth Hospital, Stockholm, Sweden. Children with rhonchi and indrawing underwent "bronchodilator challenge". C-reactive protein and nasopharyngeal PCR detecting 20 respiratory pathogens, were collected from all children. Etiology was defined according to an a priori defined algorithm based on microbiological, biochemical, and radiological findings. (3) Of 327 enrolled children, 107 (32%) required hospitalization; 91 (28%) received antibiotic treatment; 77 (24%) had a chest X-ray performed; and 60 (18%) responded to bronchodilator challenge. 243 (74%) episodes were classified as viral, 11 (3%) as mixed viral-bacterial, five (2%) as bacterial, two (0.6%) as atypical bacterial and 66 (20%) as undetermined etiology. After exclusion of children responding to bronchodilator challenge, the proportion of bacterial and mixed viral-bacterial etiology was 1% and 4%, respectively. (4) The novel TREND etiology algorithm classified the majority of clinical CAP episodes as of viral etiology, whereas bacterial etiology was uncommon. Defining CAP in children <5 years is challenging, and the WHO definition of clinical CAP is not suitable for use in children immunized with pneumococcal conjugate vaccines.
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