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- Garson, J. A., et al.
(author)
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Virological, biochemical and histological effects of human lymphoblastoid interferon in Swedish patients with chronic hepatitis
- 1997
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In: Journal of Viral Hepatitis. - : Wiley. - 1352-0504 .- 1365-2893. ; 4:5, s. 325-331
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Journal article (peer-reviewed)abstract
- Thirty-eight Swedish patients with chronic hepatitis C were randomly assigned to receive either 3 million units (MU) or 5 MU of human lymphoblastoid interferon-alpha-n1 (Wellferon) three times per week for either 6 or 12 months. The patients were monitored biochemically, histologically and by quantitative polymerase chain reaction for circulating HCV RNA, during therapy and for the following year. Overall, 22 (58%) of the patients lost detectable hepatitis C virus (HCV) viraemia during therapy but eight of these patients relapsed during follow-up, leaving 14 (37%) sustained responders. Patients infected with HCV non-type 1 genotypes were significantly more likely to achieve a sustained response than were those infected with HCV type 1 (63% vs 10.5%, P = 0.001). Sustained virological responses were also associated with lower pretreatment viraemia level, younger age, absence of cirrhosis and the higher interferon dosage regimens but these associations failed to reach statistical significance. In 97% of patients there was concordance between virological and biochemical responses, and a statistically significant (P = 0.005) improvement in the Knodell histological activity index was observed in the virological sustained responders.
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- Bustin, Stephen A., et al.
(author)
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The need for transparency and good practices in the qPCR literature
- 2013
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In: Nature Methods. - : Springer Science and Business Media LLC. - 1548-7091 .- 1548-7105. ; 10:11, s. 1063-1067
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Journal article (other academic/artistic)abstract
- Two surveys of over 1,700 publications whose authors use quantitative real-time PCR (qPCR) reveal a lack of transparent and comprehensive reporting of essential technical information. Reporting standards are significantly improved in publications that cite the Minimum Information for Publication of Quantitative Real-Time PCR Experiments (MIQE) guidelines, although such publications are still vastly outnumbered by those that do not.
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- Gaines, Robert R., et al.
(author)
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Burgess Shale-type biotas were not entirely burrowed away
- 2012
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In: Geology. - 0091-7613 .- 1943-2682. ; 40:3, s. 283-286
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Journal article (peer-reviewed)abstract
- Burgess Shale–type biotas occur globally in the Cambrian record and offer unparalleled insight into the Cambrian explosion, the initial Phanerozoic radiation of the Metazoa. Deposits bearing exceptionally preserved soft-bodied fossils are unusually common in Cambrian strata; more than 40 are now known. The well-documented decline of soft-bodied preservation following the Middle Cambrian represents the closure of a taphonomic window that was only intermittently open in marine environments thereafter. The prevailing hypothesis for this secular shift in taphonomic conditions of outer shelf environments is that soft-bodied biotas were literally burrowed away from the fossil record by increasing infaunal activity in muddy substrate environments; this would have affected geochemical gradients and increased the efficiency of organic matter recycling in sediments. New and recently published data, however, suggest a more complex scenario. Ichnologic and microstratigraphic data from Burgess Shale–type deposits indicate that (1) bioturbation exerts a limiting effect on soft-bodied preservation; (2) the observed increase in the depth and extent of bioturbation following the Middle Cambrian would have restricted preservation of Burgess Shale?type biotas in a number of settings; but (3) increasing depth and extent of bioturbation would not have affected preservation in many other settings, including the most richly fossiliferous portions of the Chengjiang (China) deposit and the Greater Phyllopod Bed of the Burgess Shale (Canada). Therefore, increasing bioturbation cannot account for the apparent loss of this pathway from the fossil record, and requires that other circumstances, including, but not limited to, widespread benthic anoxia, facilitated widespread exceptional preservation in the Cambrian.
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