| 1. |
- Högnabba, Filip, et al.
(author)
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Evolution of cyanobacterial symbioses in Ascomycota.
- 2009
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In: Biodiversity and Ecology of lichens. Liber Amicorum Harrie Sipman. Bibliotheca Lichenologica. - 1436-1698. - 9783443580780 ; 99, s. 163-184
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Book chapter (other academic/artistic)abstract
- Two fifths of the species in Ascomycota are lichen-forming, of which 10% and 3-4% have cyanobacteria as the primary and secondary photobionts respectively. To study the evolution of cyanobacterial symbioses, the phylogenetic relationships within the Ascomycota have been reconstructed. Phylogenetic analyses were made using direct optimization of nuclear SSU and LSU rDNA sequences under the parsimony optimality criterion. Our results indicate repeated evolution of the mutualistic assemblages between fungi and cyanobacteria. The stability of the cyanobacterial symbioses and the effects of photobiont alteration on the evolution of ascomycetes are discussed, as is the taxonomy of some cyanobacterial lichen taxa, and some future perspectives on the evolution of these ecologically important assemblages.
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| 2. |
- Högnabba, Filip, et al.
(author)
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Phylogenetic relationships and evolution of photobiont associations in the Lobariaceae (Peltigerales, Lecanoromycetes, Ascomycota)
- 2009
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In: Bibliotheca Lichenologica. Diversity of Lichenology - Anniversary Volume.. - 1436-1698. ; 100, s. 157-187
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Book chapter (other academic/artistic)abstract
- Phylogenetic relationships of the family Lobariaceae (Lecanoromycetes, Ascomycota) were reconstructed using direct optimization of nuclear ITS and LSU, and mitochondrial SSU rDNA sequences. Delimitations of the genera currently included in the family were investigated. Relationships of austral temperate taxa occurring in New Zealand, Australia and southern South America were studied in detail. Finally, we studied the evolution of the symbiotic associations found in the family which proved to be monophyletic. Sticta, with the exception of S. oroborealis, but including Dendriscocaulon dendroides, was found to be monophyletic while the genera Lobaria and Pseudocyphellaria turned out to be non-monophyletic. The status of Lobariella, and Lobarina as independent genera was not supported. Relationships of southern temperate Sticta species indicate a common Gondwanan ancestor. In rest of the family, species from the austral temperate zone group together with more widespread species. The ancestor of the Lobariaceae was associated with cyanobacteria. Green algal photobionts have subsequently been acquired repeatedly, but also repeatedly lost within the family. The acquisition of green algae has not resulted in a complete loss of the cyanobacterial photobiont. The cyanobacterial symbioses therefore seem to be more stable than those with green algae.
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| 3. |
- Miadlikowska, Jolanta, et al.
(author)
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A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families.
- 2014
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In: Molecular Phylogenetics and Evolution. - : Elsevier BV. - 1095-9513 .- 1055-7903. ; 79:Online 18 April 2014, s. 132-168
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Journal article (peer-reviewed)abstract
- The Lecanoromycetes is the largest class of lichenized Fungi, and one of the most species-rich classes in the kingdom. Here we provide a multigene phylogenetic synthesis (using three ribosomal RNA-coding and two protein-coding genes) of the Lecanoromycetes based on 635 newly generated and 3307 publicly available sequences representing 1139 taxa, 317 genera, 66 families, 17 orders and five subclasses (four currently recognized: Acarosporomycetidae, Lecanoromycetidae, Ostropomycetidae, Umbilicariomycetidae; and one provisionarily recognized, 'Candelariomycetidae'). Maximum likelihood phylogenetic analyses on four multigene datasets assembled using a cumulative supermatrix approach with a progressively higher number of species and missing data (5-gene, 5+4-gene, 5+4+3-gene and 5+4+3+2-gene datasets) show that the current classification includes non-monophyletic taxa at various ranks, which need to be recircumscribed and require revisionary treatments based on denser taxon sampling and more loci. Two newly circumscribed orders (Arctomiales and Hymeneliales in the Ostropomycetidae) and three families (Ramboldiaceae and Psilolechiaceae in the Lecanorales, and Strangosporaceae in the Lecanoromycetes inc. sed.) are introduced. The potential resurrection of the families Eigleraceae and Lopadiaceae is considered here to alleviate phylogenetic and classification disparities. An overview of the photobionts associated with the main fungal lineages in the Lecanoromycetes based on available published records is provided. A revised schematic classification at the family level in the phylogenetic context of widely accepted and newly revealed relationships across Lecanoromycetes is included. The cumulative addition of taxa with an increasing amount of missing data (i.e., a cumulative supermatrix approach, starting with taxa for which sequences were available for all five targeted genes and ending with the addition of taxa for which only two genes have been sequenced) revealed relatively stable relationships for many families and orders. However, the increasing number of taxa without the addition of more loci also resulted in an expected substantial loss of phylogenetic resolving power and support (especially for deep phylogenetic relationships), potentially including the misplacements of several taxa. Future phylogenetic analyses should include additional single copy protein-coding markers in order to improve the tree of the Lecanoromycetes. As part of this study, a new module ("Hypha") of the freely available Mesquite software was developed to compare and display the internodal support values derived from this cumulative supermatrix approach.
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| 4. |
- Motiejunaite, Jurga, et al.
(author)
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Lichens, lichenicolous and allied fungi in Asveja Regional Park (Lithuania)
- 2012
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In: Botanica Lithuanica. - 1392-1665. ; 18:2, s. 85-100
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Journal article (peer-reviewed)abstract
- The paper reports the results of lichenological investigations in Asveja Regional Park (eastern Lithuania). A large part of the study was performed during the joint 18th Symposium of Baltic Mycologists and Lichenologists (BMLS) and Nordic Lichen Society meeting (NLF), September 19–23, 2011. A list of 259 species is presented, 30 of them are new to Lithuania. Arthonia helvola, Bacidina sulphurella, Candelariella lutella, Catillaria croatica, Cladonia conista, Gyalecta derivata, Lecanora quercicola, Leptosphaeria ramalinae, Strigula jamesii, Trichonectria rubefaciens, Verrucaria banatica, V. boblensis, V. christiansenii, V. illinoisensis, V. inornata, V. nigrofusca, V. trabicola, Zwackhiomyces diederichii are recorded for the first time in the Baltic countries. New lichens for Lithuania are: Bacidia incompta, Caloplaca crenulatella, C. pyracea, Catinaria atropurpurea, Lecanora populicola, L. semipallida, Mycobilimbia epixanthoides, Ramalina dilacerata, Verrucaria inaspecta, and new lichenicolous fungi are: Cladosporium licheniphilum, Stigmidium microspilum, Xenonectriella leptalea. Eighteen species included in the Lithuanian Red Data Book were recorded which is the highest number known for any studied area in Lithuania.
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| 5. |
- Sohrabi, Mohammad, et al.
(author)
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Aspicilia rogeri sp. nov. (Megasporaceae), and other allied vagrant species in North America
- 2011
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In: The Bryologist. - : American Bryological and Lichenological Society. - 0007-2745 .- 1938-4378. ; 114:1, s. 178-189
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Journal article (peer-reviewed)abstract
- A short revision of the vagrant Aspicilia species of North America is presented based on morphological, molecular and ecological data. Vagrant Aspicilia are common lichens throughout the steppes of the western United States and in southwestern parts of Canada. Species delimitation of these lichens is difficult because of the paucity of morphological characters and large degree of variation. Inferences from nuITSrDNA sequences reveals that the North American specimens of A. fruticulosa are not most closely related to their Eurasian populations but instead share a unique ancestor with A. hispida. The specimens of A. fruticulosa from the New World are hereby recognized as a distinct species, A. rogeri. Its differentiation from the similar A. fruticulosa and A. hispida is discussed. The exclusion of A. fruticulosa from the N. American checklist is proposed temporarily.
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| 6. |
- Thell, Arne, et al.
(author)
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Phylogeny of the cetrarioid core (Parmeliaceae) based on five genetic markers
- 2009
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In: Lichenologist. - 0024-2829. ; 41:5, s. 489-511
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Journal article (peer-reviewed)abstract
- Fourteen genera belong to a monophyletic core of cetrarioid lichens, Ahtiana, Allocetraria, Arctocetraria, Cetraria, Cetrariella, Cetreliopsis, Flavocetraria, Kaernefeltia, Masonhalea, Nephromopsis, Tuckermanella, Tuckermannopsis, Usnocetraria and Vulpicida. A total of 71 samples representing 65 species (of 90 worldwide) and all type species of the genera are included in phylogentic analyses based on a complete ITS matrix and incomplete sets of group I intron, β-tubulin, GAPDH and mtSSU sequences. Eleven of the species included in the study are analysed phylogenetically for the first time, and of the 178 sequences, 67 are newly constructed. Two phylogenetic trees, one based solely on the complete ITS-matrix and a second based on total information, are similar, but not entirely identical. About half of the species are gathered in a strongly supported clade composed of the genera Allocetraria, Cetraria s. str., Cetrariella and Vulpicida. Arctocetraria, Cetreliopsis, Kaernefeltia and Tuckermanella are monophyletic genera, whereas Cetraria, Flavocetraria and Tuckermannopsis are polyphyletic. The taxonomy in current use is compared with the phylogenetic results, and future, probable or potential adjustments to the phylogeny are discussed. The single non-DNA character with a strong correlation to phylogeny based on DNA-sequences is conidial shape. The secondary chemistry of the poorly known species Cetraria annae is analyzed for the first time; the cortex contains usnic acid and atranorin, whereas isonephrosterinic, nephrosterinic, lichesterinic, protolichesterinic and squamatic acids occur in the medulla. Notes on the anatomy of Cetraria annae and Flavocetraria minuscula are also provided.
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