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Träfflista för sökning "WFRF:(Hendy Michael D) "

Search: WFRF:(Hendy Michael D)

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  • Edvardsson, Sverker, et al. (author)
  • A search for H/ACA snoRNAs in yeast using MFE secondary structure prediction
  • 2003
  • In: Bioinformatics. - : Oxford University Press (OUP). - 1367-4803 .- 1367-4811. ; 19:7, s. 865-873
  • Journal article (peer-reviewed)abstract
    • We develop an algorithm to screen the yeast genome for novel H/ACA snoRNAs. To achieve this, we introduce some new methods for facilitating the search for noncoding RNAs in genomic sequences which are based on properties of predicted minimum free-energy (MFE) secondary structures. The algorithm has been implemented and can be generalized to enable screening of other eukaryote genomes. We find that use of primary sequence alone is insufficient for identifying novel H/ACA snoRNAs. Only the use of secondary structure filters reduces the number of candidates to a manageable size. From genomic context, we identify three strong H/ACA snoRNA candidates. These together with a further 47 candidates obtained by our analysis are being experimentally screened.
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  • Result 1-1 of 1
Type of publication
journal article (1)
Type of content
peer-reviewed (1)
Author/Editor
Moulton, Vincent (1)
Gardner, Paul P (1)
Poole, Anthony M. (1)
Edvardsson, Sverker (1)
Penny, David (1)
Hendy, Michael D (1)
University
Stockholm University (1)
Mid Sweden University (1)
Language
English (1)
Research subject (UKÄ/SCB)
Natural sciences (1)
Year
2003 (1)

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