| 1. |
- Dufils, Thomas, et al.
(author)
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PiNNwall : Heterogeneous Electrode Models from Integrating Machine Learning and Atomistic Simulation
- 2023
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In: Journal of Chemical Theory and Computation. - : American Chemical Society (ACS). - 1549-9618 .- 1549-9626. ; 19:15, s. 5199-5209
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Journal article (peer-reviewed)abstract
- Electrochemical energy storage always involves the capacitive process. The prevailing electrode model used in the molecular simulation of polarizable electrode–electrolyte systems is the Siepmann–Sprik model developed for perfect metal electrodes. This model has been recently extended to study the metallicity in the electrode by including the Thomas–Fermi screening length. Nevertheless, a further extension to heterogeneous electrode models requires introducing chemical specificity, which does not have any analytical recipes. Here, we address this challenge by integrating the atomistic machine learning code (PiNN) for generating the base charge and response kernel and the classical molecular dynamics code (MetalWalls) dedicated to the modeling of electrochemical systems, and this leads to the development of the PiNNwall interface. Apart from the cases of chemically doped graphene and graphene oxide electrodes as shown in this study, the PiNNwall interface also allows us to probe polarized oxide surfaces in which both the proton charge and the electronic charge can coexist. Therefore, this work opens the door for modeling heterogeneous and complex electrode materials often found in energy storage systems.
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| 2. |
- Knijff, Lisanne, et al.
(author)
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Machine learning inference of molecular dipole moment in liquid water
- 2021
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In: Machine Learning. - : IOP Publishing. - 2632-2153. ; 2:3
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Journal article (peer-reviewed)abstract
- Molecular dipole moment in liquid water is an intriguing property, partly due to the fact that there is no unique way to partition the total electron density into individual molecular contributions. The prevailing method to circumvent this problem is to use maximally localized Wannier functions, which perform a unitary transformation of the occupied molecular orbitals by minimizing the spread function of Boys. Here we revisit this problem using a data-driven approach satisfying two physical constraints, namely: (a) The displacement of the atomic charges is proportional to the Berry phase polarization; (b) Each water molecule has a formal charge of zero. It turns out that the distribution of molecular dipole moments in liquid water inferred from latent variables is surprisingly similar to that obtained from maximally localized Wannier functions. Apart from putting a maximum-likelihood footnote to the established method, this work highlights the capability of graph convolution based charge models and the importance of physical constraints on improving the model interpretability.
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| 3. |
- Shao, Yunqi, et al.
(author)
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Finite-field coupling via learning the charge response kernel
- 2022
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In: Electronic Structure. - : Institute of Physics Publishing (IOPP). - 2516-1075. ; 4:1
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Journal article (peer-reviewed)abstract
- Response of the electronic density at the electrode–electrolyte interface to the external field (potential) is fundamental in electrochemistry. In density-functional theory, this is captured by the so-called charge response kernel (CRK). Projecting the CRK to its atom-condensed form is an essential step for obtaining the response charge of atoms. In this work, the atom-condensed CRK is learnt from the molecular polarizability using machine learning (ML) models and subsequently used for the response-charge prediction under an external field (potential). As the machine-learnt CRK shows a physical scaling of polarizability over the molecular size and does not (necessarily) require the matrix-inversion operation in practice, this opens up a viable and efficient route for introducing finite-field coupling in the atomistic simulation of electrochemical systems powered by ML models.
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| 4. |
- Shao, Yunqi, et al.
(author)
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Modelling Bulk Electrolytes and Electrolyte Interfaces with Atomistic Machine Learning
- 2021
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In: Batteries & Supercaps. - : John Wiley & Sons. - 2566-6223. ; 4:4, s. 585-595
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Research review (peer-reviewed)abstract
- Batteries and supercapacitors are electrochemical energy storage systems which involve multiple time-scales and length-scales. In terms of the electrolyte which serves as the ionic conductor, a molecular-level understanding of the corresponding transport phenomena, electrochemical (thermal) stability and interfacial properties is crucial for optimizing the device performance and achieving safety requirements. To this end, atomistic machine learning is a promising technology for bridging microscopic models and macroscopic phenomena. Here, we provide a timely snapshot of recent advances in this area. This includes technical considerations that are particularly relevant for modelling electrolytes as well as specific examples of both bulk electrolytes and associated interfaces. A perspective on methodological challenges and new applications is also discussed.
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| 5. |
- Shao, Yunqi, et al.
(author)
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PiNN : A Python Library for Building Atomic Neural Networks of Molecules and Materials
- 2020
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In: Journal of Chemical Information and Modeling. - : AMER CHEMICAL SOC. - 1549-9596 .- 1549-960X. ; 60:3, s. 1184-1193
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Journal article (peer-reviewed)abstract
- Atomic neural networks (ANNs) constitute a class of machine learning methods for predicting potential energy surfaces and physicochemical properties of molecules and materials. Despite many successes, developing interpretable ANN architectures and implementing existing ones efficiently are still challenging. This calls for reliable, general-purpose, and open-source codes. Here, we present a python library named PiNN as a solution toward this goal. In PiNN, we designed a new interpretable and high-performing graph convolutional neural network variant, PiNet, as well as implemented the established Behler-Parrinello neural network. These implementations were tested using datasets of isolated small molecules, crystalline materials, liquid water, and an aqueous alkaline electrolyte. PiNN comes with a visualizer called PiNNBoard to extract chemical insight "learned" by ANNs. It provides analytical stress tensor calculations and interfaces to both the atomic simulation environment and a development version of the Amsterdam Modeling Suite. Moreover, PiNN is highly modularized, which makes it useful not only as a standalone package but also as a chain of tools to develop and to implement novel ANNs. The code is distributed under a permissive BSD license and is freely accessible at https://github.com/Teoroo-CMC/PiNN/with full documentation and tutorials.
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| 6. |
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| 7. |
- Zhang, Leiting, et al.
(author)
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Reversible Hydration Enabling High-Rate Aqueous Li-Ion Batteries
- 2024
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In: ACS Energy Letters. - : American Chemical Society (ACS). - 2380-8195. ; 9, s. 959-966
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Journal article (peer-reviewed)abstract
- Layered TiS2 has been proposed as a versatile host material for various battery chemistries. Nevertheless, its compatibility with aqueous electrolytes has not been thoroughly understood. Herein, we report on a reversible hydration process to account for the electrochemical activity and structural evolution of TiS2 in a relatively dilute electrolyte for sustainable aqueous Li-ion batteries. Solvated water molecules intercalate in TiS2 layers together with Li+ cations, forming a hydrated phase with a nominal formula unit of Li0.38(H2O)2−δTiS2 as the end-product. We unambiguously confirm the presence of two layers of intercalated water by complementary electrochemical cycling, operando structural characterization, and computational simulation. Such a process is fast and reversible, delivering 60 mAh g–1 discharge capacity at a current density of 1250 mA g–1. Our work provides further design principles for high-rate aqueous Li-ion batteries based on reversible water cointercalation.
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