| 1. |
- Ferm, Julia, et al.
(author)
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Phylogeny of the Neotropical legume genera Zygia and Marmaroxylon and close relatives
- 2019
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In: Taxon. - : International Association for Plant Taxonomy. - 0040-0262 .- 1996-8175. ; 68:4, s. 661-672
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Journal article (peer-reviewed)abstract
- The Neotropical legume genera Zygia and Marmaroxylon have traditionally been considered closely related and are sometimes treated as congeners. They have been referred to the mimosoid tribe Ingeae based on their possession of flowers with basally fused stamen filaments. However, their systematic status and position have not been analysed in a phylogenetic context. This study provides the first molecular phylogeny of Zygia and Marmaroxylon and closely related mimosoid legume genera, particularly from the tribe Ingeae. DNA sequence data were derived from the nuclear external transcribed spacer (ETS) and the internal transcribed spacer (ITS), and from the chloroplast psbA-trnH and trnL-trnF regions, and were analysed using Bayesian inference. In all, 29 species of Zygia and 7 species of Marmaroxylon were included in the study along with representative species from the closely related genera Abarema, Acacia s.str., Archidendropsis, Calliandra, Chloroleucon, Cojoba, Faidherbia, Havardia, Hydrochorea, Inga, Leucochloron, Macrosamanea, Pithecellobium, Pseudosamanea, Samanea, Senegalia, Vachellia and Zapoteca. The results show that neither Zygia nor Marmaroxylon are monophyletic as presently circumscribed. Furthermore, these two genera are not monophyletic together. None of the nine presently recognized sections of Zygia that contain more than one species are shown to be monophyletic. Two of the monospecific sections of Zygia, sect. Ingopsis (Z. inundata) and sect. Pseudocojoba (Z. sabatieri), were found in a clade together with species of Inga. Marmaroxylon ocumarense and M. magdalenae, previously treated as synonyms (as Zygia), are not conspecific, and are found in a clade with Macrosamanea and in a clade with species of Abarema and Hydrochorea, respectively. Our results also show the Inga alliance to be non-monophyletic. In correspondence with the results presented, all species referred to Marmaroxylon, except for M. ocumarense and M. magdalenae, are here included in Zygia, and Z. inundata is treated in Inga, in which genus it was first described.
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| 2. |
- Geiger, Jennifer M.O., et al.
(author)
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Molecular phylogenetic relationships of Cibotium and origin of the Hawaiian endemics
- 2013
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In: American Fern Journal. - : American Fern Society. - 0002-8444 .- 1938-422X. ; 103:3, s. 141-152
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Journal article (peer-reviewed)abstract
- The tree fern genus Cibotium comprises nine species distributed in tropical regions of Asia, Mesoamerica, and the Hawaiian Islands. The four Hawaiian species are endemic to the Hawaiian Islands. The goals of this paper were to determine the relationships among the Cibotium species, determine whether the Hawaiian species are monophyletic, and infer the dispersal pathway likely responsible for delivering an ancestral Cibotium species to the Hawaiian Islands. Molecular phylogenetic analyses based on four coding and five non-coding plastid DNA sequences supported Hawaiian Cibotium as monophyletic, suggesting a single colonization of the Hawaiian Islands. Hawaiian Cibotium are most closely related to species in Mesoamerica. If the ancestor of Hawaiian Cibotium dispersed to the Hawaiian Islands via wind dispersed spores, our analyses suggest the trade winds or storms delivered spores from Mesoamerica or the Hawaiian Islands were colonized first by a species from Asia, followed by subsequent dispersal to Mesoamerica from Hawai'i. Our analyses do not allow us to favor one hypothesis over the other.
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| 3. |
- Kao, Tzu-Tong, et al.
(author)
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Origins of the Endemic Scaly Tree Ferns on the Galapagos and Cocos Islands
- 2015
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In: International journal of plant sciences. - : University of Chicago Press. - 1058-5893 .- 1537-5315. ; 176:9, s. 869-879
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Journal article (peer-reviewed)abstract
- Premise of research.Successful long-distance dispersal is rarely observed in scaly tree ferns (Cyatheaceae). Nevertheless, recent molecular evidence has suggested that the four endemic scaly tree ferns on the Galapagos Archipelago (Cyathea weatherbyana) and Cocos Island (Cyathea alfonsiana, Cyathea nesiotica, and Cyathea notabilis), two oceanic island groups west of Central and northern South America, probably each originated from different mainland America ancestors. However, the phylogenetic relationships inferred among these endemics and their mainland relatives have been unclear. This study is aimed at better resolving the relationships and tracing the origins of these island endemics.Methodology.Five plastid regions from 35 Cyathea species were analyzed to reconstruct phylogenetic relationships using parsimony, likelihood, and Bayesian approaches. We also estimated divergence times of these species, and our chronogram was used to reconstruct their biogeographical range history.Pivotal results.Our well-resolved phylogenetic tree of Cyathea, which is in agreement with previous studies, shows that when the four Galapagos and Cocos endemics are included, they each belong to separate subclades. Our biogeographical study suggests that the four endemics originated from independent colonization events from mainland America and that there was no dispersal of Cyathea between the island groups. We reveal more detailed relationships among the endemics and their respective close mainland relatives; some of these relationships differ from previous studies. Our findings are corroborated by new morphological data from ongoing stem anatomy studies.Conclusions.The four scaly tree ferns endemic to the Galapagos and Cocos Islands each did indeed originate as independent colonization events from separate sources in mainland America, and their closest relatives are identified here.
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| 4. |
- Korall, Petra, 1968-, et al.
(author)
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A molecular phylogeny of scaly tree ferns (Cyatheaceae)
- 2007
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In: American Journal of Botany. - : Wiley. - 0002-9122 .- 1537-2197. ; 94:5, s. 873-886
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Journal article (peer-reviewed)abstract
- Tree ferns recently were identified as the closest sister group to the hyperdiverse clade of ferns, the polypods. Although most of the 600 species of tree ferns are arborescent, the group encompasses a wide range of morphological variability, from diminutive members to the giant scaly tree ferns, Cyatheaceae. This well-known family comprises most of the tree fern diversity (similar to 500 species) and is widespread in tropical, subtropical, and south temperate regions of the world. Here we investigate the phylogenetic relationships of scaly tree ferns based on DNA sequence data from five plastid regions (rbcL, rbcL-accD IGS, rbcL-atpB IGS, trnG-trnR, and trnL-trnF). A basal dichotomy resolves Sphaeropteris as sister to all other taxa and scale features support these two clades: Sphaeropteris has conform scales, whereas all other taxa have marginate scales. The marginate-scaled clade consists of a basal trichotomy, with the three groups here termed (1) Cyathea (including Cnemidaria, Hymenophyllopsis, Trichipteris), (2) Alsophila sensu stricto, and (3) Gymnosphaera (previously recognized as a section within Alsophila) + A. capensis. Scaly tree ferns display a wide range of indusial structures, and although indusium shape is homoplastic it does contain useful phylogenetic information that supports some of the larger clades recognised.
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| 5. |
- Korall, Petra, et al.
(author)
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ABRUPT DECELERATION OF MOLECULAR EVOLUTION LINKED TO THE ORIGIN OF ARBORESCENCE IN FERNS
- 2010
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In: Evolution. - : Wiley. - 0014-3820 .- 1558-5646. ; 64:9, s. 2786-2792
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Journal article (peer-reviewed)abstract
- Molecular rate heterogeneity, whereby rates of molecular evolution vary among groups of organisms, is a well-documented phenomenon. Nonetheless, its causes are poorly understood. For animals, generation time is frequently cited because longer-lived species tend to have slower rates of molecular evolution than their shorter-lived counterparts. Although a similar pattern has been uncovered in flowering plants, using proxies such as growth form, the underlying process has remained elusive. Here, we find a deceleration of molecular evolutionary rate to be coupled with the origin of arborescence in ferns. Phylogenetic branch lengths within the ""tree fern"" clade are considerably shorter than those of closely related lineages, and our analyses demonstrate that this is due to a significant difference in molecular evolutionary rate. Reconstructions reveal that an abrupt rate deceleration coincided with the evolution of the long-lived tree-like habit at the base of the tree fern clade. This suggests that a generation time effect may well be ubiquitous across the green tree of life, and that the search for a responsible mechanism must focus on characteristics shared by all vascular plants. Discriminating among the possibilities will require contributions from various biological disciplines, but will be necessary for a full appreciation of molecular evolution.
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| 6. |
- Korall, Petra, 1968-, et al.
(author)
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Global biogeography of scaly tree ferns (Cyatheaceae): evidence for Gondwanan vicariance and limited transoceanic dispersal
- 2014
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In: Journal of Biogeography. - : Wiley-Blackwell. - 0305-0270 .- 1365-2699. ; 41:2, s. 402-413
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Journal article (peer-reviewed)abstract
- AimScaly tree ferns, Cyatheaceae, are a well-supported group of mostly tree-forming ferns found throughout the tropics, the subtropics and the south-temperate zone. Fossil evidence shows that the lineage originated in the Late Jurassic period. We reconstructed large-scale historical biogeographical patterns of Cyatheaceae and tested the hypothesis that some of the observed distribution patterns are in fact compatible, in time and space, with a vicariance scenario related to the break-up of Gondwana.LocationTropics, subtropics and south-temperate areas of the world.MethodsThe historical biogeography of Cyatheaceae was analysed in a maximum likelihood framework using Lagrange. The 78 ingroup taxa are representative of the geographical distribution of the entire family. The phylogenies that served as a basis for the analyses were obtained by Bayesian inference analyses of mainly previously published DNA sequence data using MrBayes. Lineage divergence dates were estimated in a Bayesian Markov chain Monte Carlo framework using beast.ResultsCyatheaceae originated in the Late Jurassic in either South America or Australasia. Following a range expansion, the ancestral distribution of the marginate-scaled clade included both these areas, whereas Sphaeropteris is reconstructed as having its origin only in Australasia. Within the marginate-scaled clade, reconstructions of early divergences are hampered by the unresolved relationships among the Alsophila, Cyathea and Gymnosphaera lineages. Nevertheless, it is clear that the occurrence of the Cyathea and Sphaeropteris lineages in South America may be related to vicariance, whereas transoceanic dispersal needs to be inferred for the range shifts seen in Alsophila and Gymnosphaera.Main conclusionsThe evolutionary history of Cyatheaceae involves both Gondwanan vicariance scenarios as well as long-distance dispersal events. The number of transoceanic dispersals reconstructed for the family is rather few when compared with other fern lineages. We suggest that a causal relationship between reproductive mode (outcrossing) and dispersal limitations is the most plausible explanation for the pattern observed.
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| 10. |
- Korall, Petra, 1968-, et al.
(author)
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PHYLOGENETIC RELATIONSHIPS IN SELAGINELLACEAE BASED ON RBCL SEQUENCES
- 2002
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In: American Journal of Botany. - 0002-9122 .- 1537-2197. ; 89:3, s. 506-517
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Journal article (peer-reviewed)abstract
- A phylogenetic framework is developed for the clubmoss family Selaginellaceae based on maximum parsimony analyses of molecular data. The chloroplast gene rbcL was sequenced for 62 species, which represent nearly 10% of living species diversity in the family. Taxa were chosen to reflect morphological, geographical, and ecological diversity. The analyses provide support for monophyly of subgenera Selaginella and Tetragonostachys. Stachygynandrum and Heterostachys are polyphyletic. Monophyly of Ericetorum is uncertain. Results also indicate a large number of new groupings not previously recognized on morphological grounds. Some of these new groups seem to have corresponding morphological synapomorphies, such as the presence of rhizophores (distinctive root-like structures), aspects of rhizophore development, and leaf and stem morphology. Others share distinctive ecological traits (e.g., xerophytism). For many groups, however, no morphological, ecological, or physiological markers are known. This could reflect patchy sampling and a lack of detailed knowledge about many species. Despite a lengthy fossil record dating from the Carboniferous Period, cladogram topology indicates that most of the living tropical species are probably the products of more recent diversifications. Resurrection plants, extreme xerophytes characterized by aridity-driven inrolling of branches and rapid revival on rehydration, have evolved at least three times in quite different clades.
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