| 1. |
- Ahmerkamp, Soeren, et al.
(author)
-
Simultaneous visualization of flow fields and oxygen concentrations to unravel transport and metabolic processes in biological systems
- 2022
-
In: CELL REPORTS METHODS. - : Elsevier. - 2667-2375. ; 2:5
-
Journal article (peer-reviewed)abstract
- From individual cells to whole organisms, O-2 transport unfolds across micrometer- tomillimeter-length scales and can change within milliseconds in response to fluid flows and organismal behavior. The spatiotemporal complexity of these processes makes the accurate assessment of O-2 dynamics via currently availablemethods difficult or unreliable. Here, we present "sensPIV,'' a method to simultaneously measure O-2 concentrations and flow fields. By tracking O-2-sensitive microparticles in flow using imaging technologies that allow for instantaneous referencing, wemeasuredO(2) transportwithin (1) microfluidic devices, (2) sinkingmodel aggregates, and (3) complex colony-forming corals. Through the use of sensPIV, we find that corals use ciliarymovement to link zones of photosynthetic O-2 production to zones of O-2 consumption. SensPIV can potentially be extendable to study flow-organism interactions across many life-science and engineering applications.
|
|
| 2. |
- Eichner, Meri, et al.
(author)
-
Chemical microenvironments and single-cell carbon and nitrogen uptake in field-collected colonies of Trichodesmium under different pCO2
- 2017
-
In: ISME Journal. - : Springer Science and Business Media LLC. - 1751-7362 .- 1751-7370. ; 11, s. 1305-1317
-
Journal article (peer-reviewed)abstract
- © 2017 The Author(s)Gradients of oxygen (O2) and pH, as well as small-scale fluxes of carbon (C), nitrogen (N) and O2 were investigated under different partial pressures of carbon dioxide (pCO2) in field-collected colonies of the marine dinitrogen (N2)-fixing cyanobacterium Trichodesmium. Microsensor measurements indicated that cells within colonies experienced large fluctuations in O2, pH and CO2 concentrations over a day–night cycle. O2 concentrations varied with light intensity and time of day, yet colonies exposed to light were supersaturated with O2 (up to ~200%) throughout the light period and anoxia was not detected. Alternating between light and dark conditions caused a variation in pH levels by on average 0.5 units (equivalent to 15nmoll-1 proton concentration). Single-cell analyses of C and N assimilation using secondary ion mass spectrometry (SIMS; large geometry SIMS and nanoscale SIMS) revealed high variability in metabolic activity of single cells and trichomes of Trichodesmium, and indicated transfer of C and N to colony-associated non-photosynthetic bacteria. Neither O2 fluxes nor C fixation by Trichodesmium were significantly influenced by short-term incubations under different pCO2 levels, whereas N2 fixation increased with increasing pCO2. The large range of metabolic rates observed at the single-cell level may reflect a response by colony-forming microbial populations to highly variable microenvironments.The ISME Journal advance online publication, 11 April 2017; doi:10.1038/ismej.2017.15.
|
|
| 3. |
- Eichner, Meri, et al.
(author)
-
N2 fixation in free-floating filaments of Trichodesmium is higher than in transiently suboxic colony microenvironments
- 2019
-
In: New Phytologist. - : Wiley. - 1469-8137 .- 0028-646X. ; 222:2, s. 852-863
-
Journal article (peer-reviewed)abstract
- To understand the role of micrometer‐scale oxygen (O2) gradients in facilitating dinitrogen (N2) fixation, we characterized O2 dynamics in the microenvironment around free‐floating trichomes and colonies of Trichodesmium erythraeum IMS101. Diurnal and spatial variability in O2 concentrations in the bulk medium, within colonies, along trichomes and within single cells were determined using O2 optodes, microsensors and model calculations. Carbon (C) and N2 fixation as well as O2 evolution and uptake under different O2 concentrations were analyzed by stable isotope incubations and membrane inlet mass spectrometry. We observed a pronounced diel rhythm in O2 fluxes, with net O2 evolution restricted to short periods in the morning and evening, and net O2 uptake driven by dark respiration and light‐dependent O2 uptake during the major part of the light period. Remarkably, colonies showed lower N2 fixation and C fixation rates than free‐floating trichomes despite the long period of O2 undersaturation in the colony microenvironment. Model calculations demonstrate that low permeability of the cell wall in combination with metabolic heterogeneity between single cells allows for anoxic intracellular conditions in colonies but also free‐floating trichomes of Trichodesmium. Therefore, whereas colony formation must have benefits for Trichodesmium, it does not favor N2 fixation.
|
|
| 4. |
- Foster, Rachel Ann, et al.
(author)
-
The rate and fate of N2 and C fixation by marine diatom-diazotroph symbioses
- 2021
-
In: The ISME Journal. - : Springer Science and Business Media LLC. - 1751-7362 .- 1751-7370.
-
Journal article (peer-reviewed)abstract
- N2 fixation constitutes an important new nitrogen source in the open sea. One group of filamentous N2 fixing cyanobacteria (Richelia intracellularis, hereafter Richelia) form symbiosis with a few genera of diatoms. High rates of N2 fixation and carbon (C) fixation have been measured in the presence of diatom-Richelia symbioses. However, it is unknown how partners coordinate C fixation and how the symbiont sustains high rates of N2 fixation. Here, both the N2 and C fixation in wild diatom-Richelia populations are reported. Inhibitor experiments designed to inhibit host photosynthesis, resulted in lower estimated growth and depressed C and N2 fixation, suggesting that despite the symbionts ability to fix their own C, they must still rely on their respective hosts for C. Single cell analysis indicated that up to 22% of assimilated C in the symbiont is derived from the host, whereas 78–91% of the host N is supplied from their symbionts. A size-dependent relationship is identified where larger cells have higher N2 and C fixation, and only N2 fixation was light dependent. Using the single cell measures, the N-rich phycosphere surrounding these symbioses was estimated and contributes directly and rapidly to the surface ocean rather than the mesopelagic, even at high estimated sinking velocities (<10 m d−1). Several eco-physiological parameters necessary for incorporating symbiotic N2 fixing populations into larger basin scale biogeochemical models (i.e., N and C cycles) are provided.
|
|
| 5. |
- Holtappels, Moritz, et al.
(author)
-
Measurement and interpretation of solute concentration gradients in the benthic boundary layer
- 2011
-
In: Limnology and Oceanography. - : Wiley. - 1541-5856. ; 9, s. 1-13
-
Journal article (peer-reviewed)abstract
- The coastal ocean is characterized by high exchange rates of organic matter, oxygen, and nutrients between the sediment and the water column. The solutes that are exchanged between the sediment and the overlying water column are transported across the benthic boundary layer (BBL) by means of turbulent diffusion. Thus, solute concentration gradients in the BBL contain valuable information about the respective fluxes. In this study, we present the instrumentation and sampling strategies to measure oxygen and nutrient concentration gradients in the BBL. We provide the theoretical background and the calculation procedure to derive ratios of nutrient and oxygen fluxes from these concentration gradients. The noninvasive approach is illustrated at two sampling sites in the western Baltic Sea where nutrient and oxygen concentration gradients of up to 5 and 30 mu M m(-1), respectively, were measured. Nutrient and oxygen flux ratios were used to establish a nitrogen flux balance between sediment and water column indicating that 20% and 50% of the mineralized nitrogen left the sediment in form of N(2) (station A and B, respectively). The results are supported by sediment incubation experiments of intact sediment cores, measuring denitrification rates, and oxygen uptake. The presented flux ratio approach is applicable without knowledge of turbulent diffusivities in the BBL and is, therefore, unaffected by non-steady-state current velocities and diffusivities.
|
|
| 6. |
- Holtappels, Moritz, et al.
(author)
-
The determination of oxygen and nutrient fluxes in the benthic boundary layer
- 2008
-
In: ASLO Ocean Science Meeting 2008.
-
Conference paper (peer-reviewed)abstract
- The coastal ocean is characterized by high exchange rates of nutrients and particles between the sediment and the water column. To date, the rates and transfer processes at the interface, the benthic boundary layer (BBL), remain poorly understood. We show how concentration profiles of oxygen and nutrients in the BBL can be used to determine fluxes across the sediment water interface by using the specific hydrodynamic properties of the BBL. This approach is favourable as it is non-invasive and integrates over a large surface area. BBL concentration profiles from the Baltic Sea were used to calculate the ratio of nutrient fluxes. Compared to the Redfield ratio, they indicate a massive loss of available nitrogen from the sediment. These findings are supported by high rates of denitrification in the sediment calculated from stable isotope enrichment experiments with 15N labelled nitrate.
|
|
| 7. |
|
|
| 8. |
- Klawonn, Isabell, et al.
(author)
-
Cell-specific nitrogen- and carbon-fixation of cyanobacteria in a temperate marine system (Baltic Sea)
- 2016
-
In: Environmental Microbiology. - : Wiley. - 1462-2912 .- 1462-2920 .- 1758-2229. ; 18:12, s. 4596-4609
-
Journal article (peer-reviewed)abstract
- We analysed N2- and carbon (C) fixation in individual cells of Baltic Sea cyanobacteria by combining stable isotope incubations with secondary ion mass spectrometry (SIMS). Specific growth rates based on N2- and C-fixation were higher for cells of Dolichospermum spp. than for Aphanizomenon sp. and Nodularia spumigena. The cyanobacterial biomass, however, was dominated by Aphanizomenon sp., which contributed most to total N2-fixation in surface waters of the Northern Baltic Proper. N2-fixation by Pseudanabaena sp. and colonial picocyanobacteria was not detectable. N2-fixation by Aphanizomenon sp., Dolichospermum spp. and N. spumigena populations summed up to total N2-fixation, thus these genera appeared as sole diazotrophs within the Baltic Sea's euphotic zone, while their mean contribution to total C-fixation was 21%. Intriguingly, cell-specific N2-fixation was 8-fold higher at a coastal station compared to an offshore station, revealing coastal zones as habitats with substantial N2-fixation. At the coastal station, the cell-specific C- to N2-fixation ratio was below the cellular C:N ratio, i.e., N2 was assimilated in excess to C-fixation, whereas the C- to N2-fixation ratio exceeded the C:N ratio in offshore sampled diazotrophs. Our findings highlight SIMS as a powerful tool not only for qualitative but also for quantitative N2-fixation assays in aquatic environments.
|
|
| 9. |
- Klawonn, Isabell, et al.
(author)
-
Untangling hidden nutrient dynamics : rapid ammonium cycling and single-cell ammonium assimilation in marine plankton communities
- 2019
-
In: The ISME Journal. - : Springer Science and Business Media LLC. - 1751-7362 .- 1751-7370. ; 13:8, s. 1960-1974
-
Journal article (peer-reviewed)abstract
- Ammonium is a central nutrient in aquatic systems. Yet, cell-specific ammonium assimilation among diverse functional plankton is poorly documented in field communities. Combining stable-isotope incubations (15N-ammonium, 15N2 and 13C-bicarbonate) with secondary-ion mass spectrometry, we quantified bulk ammonium dynamics, N2-fixation and carbon (C) fixation, as well as single-cell ammonium assimilation and C-fixation within plankton communities in nitrogen (N)-depleted surface waters during summer in the Baltic Sea. Ammonium production resulted from regenerated (≥91%) and new production (N2-fixation, ≤9%), supporting primary production by 78–97 and 2–16%, respectively. Ammonium was produced and consumed at balanced rates, and rapidly recycled within 1 h, as shown previously, facilitating an efficient ammonium transfer within plankton communities. N2-fixing cyanobacteria poorly assimilated ammonium, whereas heterotrophic bacteria and picocyanobacteria accounted for its highest consumption (~20 and ~20–40%, respectively). Surprisingly, ammonium assimilation and C-fixation were similarly fast for picocyanobacteria (non-N2-fixing Synechococcus) and large diatoms (Chaetoceros). Yet, the population biomass was high for Synechococcus but low for Chaetoceros. Hence, autotrophic picocyanobacteria and heterotrophic bacteria, with their high single-cell assimilation rates and dominating population biomass, competed for the same nutrient source and drove rapid ammonium dynamics in N-depleted marine waters.
|
|
| 10. |
|
|
